Gchil9067.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9067.t1
Unique Name	Gchil9067.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1275910..1277163 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707412.1
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15102
KEGG TC	2.A.29.4
Evalue	9.67e-70
EggNOG OGs	KOG0767@1\|root,KOG0767@2759\|Eukaryota
Description	phosphate ion transmembrane transport
COG category	U
BRITE	ko00000,ko02000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9067	Gchil9067	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1275910..1277163 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9067.t1.start1	Gchil9067.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1275910..1275912 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9067.t1.CDS1	Gchil9067.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1275910..1277163 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9067.t1.exon1	Gchil9067.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1275910..1277163 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9067.t1.stop1	Gchil9067.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1277161..1277163 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9067.t1	Gchil9067.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1275910..1277163 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1275910..1277163+
coding sequence from alignment at tig00004370_pilon:1275910..1277163+

mRNA sequence

>Gchil9067.t1 ID=Gchil9067.t1|Name=Gchil9067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=418bp
MPDVVAVVARTISMVAALLPAAALASALPLSSLRAADIGVASDAPRPLQL
LLLCSVLLLLASLLKSLALVPQANFPHVDRLVTALCGLTLAAFLARRLAL
LVAAGHISLARFLQFFMAGGICAFLTHAACTPIDVVKTRIQTMPARYAGM
ADAFARIVAEEGYSTLLKGLAATATGYFMHGAFKYSFYELFKLVFSTDAA
TAVKPPLSIAALSGFFAECIACILLCPMEAIRIRSVSDSSFPTTVVSGLS
LLLKTEGVHGWYKGLPAMLLKQVPYTVGQFVSFELAVNLVKRTVLAVLGA
QSASSAVASISSFAGLLAGITAAIISHPGDTILSRINQQESDDSALNQIL
RVARAAGVSGLFTGLLPRLVQVSCMIGGQFLIYDSIKLWCGIVPAAALPT
DPLPAVADAVVAAAKST*

spliced messenger RNA

>Gchil9067.t1 ID=Gchil9067.t1|Name=Gchil9067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00004370_pilon:1275910..1277163+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGACGTCGTCGCCGTCGTCGCGCGCACGATTTCGATGGTcgccgc
gctgctgcccgcggccgccctggcctcggcgctgccgctgtcgtcgctgc
gcgcggccgacatcggcgtcgcGTCGGATGCGCCACGTCCgctgcagctg
ctgctgctctgttcagtgctgctgttgctAGCGTCGTTGCTCAAGTCGCT
GGCGCTCGTGCCTCAGGCTAACTTTCCGCACGTCGACCGCCTGGTTACGG
CTTTGTGCGGCCTCACGTTGGCCGCTTTCTTGGCGCGTCGCCTCGCGCTG
CTTGTGGCCGCCGGTCATATCTCACTGGCGCGATTCTTACAGTTCTTCAT
GGCTGGCGGCATCTGCGCCTTTCTCACGCACGCCGCTTGTACCCCCATCG
ACGTCGTCAAGACCCGTATCCAGACCATGCCGGCGCGCTACGCCGGCATG
GCCGATGCCTTTGCGCGCATCGTTGCCGAGGAGGGTTACTCCACCTTGCT
CAAGGGGCTGGCCGCCACTGCCACTGGCTACTTCATGCACGGCGCTTTCA
AGTACTCCTTCTACGAGCTTTTCAAACTTGTCTTCTCCACCGACGCCGCC
ACTGCCGTCAAGCCCCCGCTCTCCATTGCCGCCCTCTCCGGCTTCTTTGC
CGAGTGCATTGCCTGCATCCTGCTGTGCCCCATGGAGGCCATTCGCATCC
GATCCGTCTCGGACTCTTCCTTCCCCACCACCGTCGTGTCCGGCCTCTCG
CTGTTGCTCAAGACCGAGGGCGTGCACGGTTGGTACAAGGGGCTCCCGGC
CATGCTTCTCAAGCAGGTCCCGTACACCGTGGGCCAGTTTGTGTCCTTCG
AGCTCGCCGTCAATCTCGTCAAACGTACCGTCCTCGCCGTGCTGGGCGCC
CAGAGCGCCTCCTCAGCTGTCGCCAGCATATCCTCTTTTGCCGGTCTCCT
GGCCGGCATCACCGCCGCCATCATCTCGCACCCCGGCGACACCATTCTCT
CCAGGATTAACCAGCAAGAGAGCGATGATTCCGCCCTCAATCAGATTCTT
CGCGTCGCCCGCGCTGCCGGCGTGTCCGGCCTCTTCACCGGCCTCTTGCC
CAGGCTCGTGCAGGTCAGCTGCATGATTGGAGGCCAGTTTCTCATCTACG
ACTCCATCAAACTGTGGTGTGGCATTGTGCCGGCCGCTGCCTTGCCCACT
GACCCGCTGCCCGCCGTGGCTGACGCTGTCGTTGCCGCCGCAAAGAGCAC
ATGA

protein sequence of Gchil9067.t1

>Gchil9067.t1 ID=Gchil9067.t1|Name=Gchil9067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=418bp
MPDVVAVVARTISMVAALLPAAALASALPLSSLRAADIGVASDAPRPLQL
LLLCSVLLLLASLLKSLALVPQANFPHVDRLVTALCGLTLAAFLARRLAL
LVAAGHISLARFLQFFMAGGICAFLTHAACTPIDVVKTRIQTMPARYAGM
ADAFARIVAEEGYSTLLKGLAATATGYFMHGAFKYSFYELFKLVFSTDAA
TAVKPPLSIAALSGFFAECIACILLCPMEAIRIRSVSDSSFPTTVVSGLS
LLLKTEGVHGWYKGLPAMLLKQVPYTVGQFVSFELAVNLVKRTVLAVLGA
QSASSAVASISSFAGLLAGITAAIISHPGDTILSRINQQESDDSALNQIL
RVARAAGVSGLFTGLLPRLVQVSCMIGGQFLIYDSIKLWCGIVPAAALPT
DPLPAVADAVVAAAKST*

mRNA from alignment at tig00004370_pilon:1275910..1277163+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9067.t1 ID=Gchil9067.t1|Name=Gchil9067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00004370_pilon:1275910..1277163+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGACGTCGTCGCCGTCGTCGCGCGCACGATTTCGATGGTcgccgc
gctgctgcccgcggccgccctggcctcggcgctgccgctgtcgtcgctgc
gcgcggccgacatcggcgtcgcGTCGGATGCGCCACGTCCgctgcagctg
ctgctgctctgttcagtgctgctgttgctAGCGTCGTTGCTCAAGTCGCT
GGCGCTCGTGCCTCAGGCTAACTTTCCGCACGTCGACCGCCTGGTTACGG
CTTTGTGCGGCCTCACGTTGGCCGCTTTCTTGGCGCGTCGCCTCGCGCTG
CTTGTGGCCGCCGGTCATATCTCACTGGCGCGATTCTTACAGTTCTTCAT
GGCTGGCGGCATCTGCGCCTTTCTCACGCACGCCGCTTGTACCCCCATCG
ACGTCGTCAAGACCCGTATCCAGACCATGCCGGCGCGCTACGCCGGCATG
GCCGATGCCTTTGCGCGCATCGTTGCCGAGGAGGGTTACTCCACCTTGCT
CAAGGGGCTGGCCGCCACTGCCACTGGCTACTTCATGCACGGCGCTTTCA
AGTACTCCTTCTACGAGCTTTTCAAACTTGTCTTCTCCACCGACGCCGCC
ACTGCCGTCAAGCCCCCGCTCTCCATTGCCGCCCTCTCCGGCTTCTTTGC
CGAGTGCATTGCCTGCATCCTGCTGTGCCCCATGGAGGCCATTCGCATCC
GATCCGTCTCGGACTCTTCCTTCCCCACCACCGTCGTGTCCGGCCTCTCG
CTGTTGCTCAAGACCGAGGGCGTGCACGGTTGGTACAAGGGGCTCCCGGC
CATGCTTCTCAAGCAGGTCCCGTACACCGTGGGCCAGTTTGTGTCCTTCG
AGCTCGCCGTCAATCTCGTCAAACGTACCGTCCTCGCCGTGCTGGGCGCC
CAGAGCGCCTCCTCAGCTGTCGCCAGCATATCCTCTTTTGCCGGTCTCCT
GGCCGGCATCACCGCCGCCATCATCTCGCACCCCGGCGACACCATTCTCT
CCAGGATTAACCAGCAAGAGAGCGATGATTCCGCCCTCAATCAGATTCTT
CGCGTCGCCCGCGCTGCCGGCGTGTCCGGCCTCTTCACCGGCCTCTTGCC
CAGGCTCGTGCAGGTCAGCTGCATGATTGGAGGCCAGTTTCTCATCTACG
ACTCCATCAAACTGTGGTGTGGCATTGTGCCGGCCGCTGCCTTGCCCACT
GACCCGCTGCCCGCCGTGGCTGACGCTGTCGTTGCCGCCGCAAAGAGCAC
ATGA

Coding sequence (CDS) from alignment at tig00004370_pilon:1275910..1277163+

>Gchil9067.t1 ID=Gchil9067.t1|Name=Gchil9067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00004370_pilon:1275910..1277163+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGACGTCGTCGCCGTCGTCGCGCGCACGATTTCGATGGTcgccgc
gctgctgcccgcggccgccctggcctcggcgctgccgctgtcgtcgctgc
gcgcggccgacatcggcgtcgcGTCGGATGCGCCACGTCCgctgcagctg
ctgctgctctgttcagtgctgctgttgctAGCGTCGTTGCTCAAGTCGCT
GGCGCTCGTGCCTCAGGCTAACTTTCCGCACGTCGACCGCCTGGTTACGG
CTTTGTGCGGCCTCACGTTGGCCGCTTTCTTGGCGCGTCGCCTCGCGCTG
CTTGTGGCCGCCGGTCATATCTCACTGGCGCGATTCTTACAGTTCTTCAT
GGCTGGCGGCATCTGCGCCTTTCTCACGCACGCCGCTTGTACCCCCATCG
ACGTCGTCAAGACCCGTATCCAGACCATGCCGGCGCGCTACGCCGGCATG
GCCGATGCCTTTGCGCGCATCGTTGCCGAGGAGGGTTACTCCACCTTGCT
CAAGGGGCTGGCCGCCACTGCCACTGGCTACTTCATGCACGGCGCTTTCA
AGTACTCCTTCTACGAGCTTTTCAAACTTGTCTTCTCCACCGACGCCGCC
ACTGCCGTCAAGCCCCCGCTCTCCATTGCCGCCCTCTCCGGCTTCTTTGC
CGAGTGCATTGCCTGCATCCTGCTGTGCCCCATGGAGGCCATTCGCATCC
GATCCGTCTCGGACTCTTCCTTCCCCACCACCGTCGTGTCCGGCCTCTCG
CTGTTGCTCAAGACCGAGGGCGTGCACGGTTGGTACAAGGGGCTCCCGGC
CATGCTTCTCAAGCAGGTCCCGTACACCGTGGGCCAGTTTGTGTCCTTCG
AGCTCGCCGTCAATCTCGTCAAACGTACCGTCCTCGCCGTGCTGGGCGCC
CAGAGCGCCTCCTCAGCTGTCGCCAGCATATCCTCTTTTGCCGGTCTCCT
GGCCGGCATCACCGCCGCCATCATCTCGCACCCCGGCGACACCATTCTCT
CCAGGATTAACCAGCAAGAGAGCGATGATTCCGCCCTCAATCAGATTCTT
CGCGTCGCCCGCGCTGCCGGCGTGTCCGGCCTCTTCACCGGCCTCTTGCC
CAGGCTCGTGCAGGTCAGCTGCATGATTGGAGGCCAGTTTCTCATCTACG
ACTCCATCAAACTGTGGTGTGGCATTGTGCCGGCCGCTGCCTTGCCCACT
GACCCGCTGCCCGCCGTGGCTGACGCTGTCGTTGCCGCCGCAAAGAGCAC
ATGA