Gchil7447.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7447.t1
Unique NameGchil7447.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1245827..1246936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM247CT
PFAMsRETICULATA-like
Max annot lvl2759|Eukaryota
Evalue2.65e-59
EggNOG OGs28IK9@1|root,2QQX6@2759|Eukaryota
DescriptionProtein RETICULATA-related
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7447Gchil7447Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1245827..1246936 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7447.t1.stop1Gchil7447.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1245827..1245829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7447.t1.CDS1Gchil7447.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1245827..1246936 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7447.t1.exon1Gchil7447.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1245827..1246936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7447.t1.start1Gchil7447.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1246934..1246936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7447.t1Gchil7447.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1245827..1246936 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7447.t1 ID=Gchil7447.t1|Name=Gchil7447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=370bp
MNRPAFLLGTPLLGRDSHRPMLCSNRVAISMKLRRGVKYNEAFRRDRNIF
RPDPESISRFDSPNAQGVIEGNAADQNVLQDKFSEESFQRIDSGNGVPPN
GNGDGNEGNGPNWEDESEEPEEEVGSGQVARETVTDEHGKRLREVYAMPI
LGGIARRWPALRFRLMANSRLPLQMGVELGIGFTTKTVAEVQGRKGRFWN
EFDFYLSDIALELFGDAMLVWLLSPVAMVGGPIRTLPRHAGQVGNFMLTE
RIVAFVWKGIQFGIVGFSSSMVGHGLTSWLVKVRNESGNKIGNVKLAPVV
PNSIAWGSFLMVNSNTRYQAVNCIEQRVLDQVFGANAALLGLVTFALRAT
NSYIGSAWWLPWARQWGLQ*
back to top

spliced messenger RNA

>Gchil7447.t1 ID=Gchil7447.t1|Name=Gchil7447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000007_pilon:1245827..1246936- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGGCCGGCGTTTCTACTAGGCACGCCGCTACTCGGCCGAGATTC
GCATCGACCTATGCTGTGTTCCAATCGCGTTGCGATATCGATGAAGCTTA
GACGCGGCGTCAAATACAACGAAGCTTTTCGCCGAGATAGAAATATATTC
CGCCCGGATCCCGAAAGCATATCGCGTTTCGACTCGCCGAACGCCCAAGG
TGTGATAGAAGGAAACGCTGCAGACCAAAACGTTCTGCAGGATAAGTTTT
CTGAAGAAAGTTTCCAAAGAATCGACTCCGGAAATGGGGTGCCTCCGAAT
GGAAACGGGGATGGGAATGAAGGTAATGGTCCGAATTGGGAAGATGAATC
CGAAGAACCAGAGGAAGAGGTAGGTTCTGGTCAAGTCGCTCGAGAAACCG
TGACTGACGAACATGGTAAGCGACTGAGGGAGGTGTACGCCATGCCCATC
CTTGGGGGAATTGCACGTCGGTGGCCGGCGCTGCGCTTTCGACTAATGGC
TAATTCACGACTTCCTCTTCAGATGGGAGTGGAGTTGGGTATTGGATTCA
CTACGAAGACGGTGGCTGAAGTGCAGGGAAGAAAAGGTCGCTTTTGGAAC
GAGTTTGATTTTTATCTCAGCGACATCGCTCTTGAGCTATTTGGTGACGC
GATGCTTGTGTGGTTACTTAGCCCAGTGGCTATGGTAGGAGGCCCCATAC
GGACACTGCCGCGACACGCCGGGCAGGTGGGAAACTTCATGCTAACTGAG
AGAATAGTAGCATTCGTGTGGAAAGGCATACAGTTTGGAATCGTTGGGTT
CTCGTCGTCTATGGTTGGGCATGGACTAACGAGCTGGCTGGTAAAAGTGA
GAAATGAGAGCGGAAACAAGATCGGCAATGTGAAACTGGCTCCGGTGGTA
CCGAACAGCATAGCTTGGGGCTCATTTTTAATGGTGAATTCTAACACTAG
GTACCAGGCTGTGAACTGCATCGAACAACGAGTCTTGGATCAGGTGTTCG
GAGCGAATGCGGCGCTTCTCGGACTAGTGACGTTTGCGTTGCGCGCTACC
AACAGCTACATCGGCAGCGCTTGGTGGTTGCCGTGGGCAAGGCAATGGGG
ACTTCAGTAG
back to top

protein sequence of Gchil7447.t1

>Gchil7447.t1 ID=Gchil7447.t1|Name=Gchil7447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=370bp
MNRPAFLLGTPLLGRDSHRPMLCSNRVAISMKLRRGVKYNEAFRRDRNIF
RPDPESISRFDSPNAQGVIEGNAADQNVLQDKFSEESFQRIDSGNGVPPN
GNGDGNEGNGPNWEDESEEPEEEVGSGQVARETVTDEHGKRLREVYAMPI
LGGIARRWPALRFRLMANSRLPLQMGVELGIGFTTKTVAEVQGRKGRFWN
EFDFYLSDIALELFGDAMLVWLLSPVAMVGGPIRTLPRHAGQVGNFMLTE
RIVAFVWKGIQFGIVGFSSSMVGHGLTSWLVKVRNESGNKIGNVKLAPVV
PNSIAWGSFLMVNSNTRYQAVNCIEQRVLDQVFGANAALLGLVTFALRAT
NSYIGSAWWLPWARQWGLQ*
back to top

mRNA from alignment at tig00000007_pilon:1245827..1246936-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7447.t1 ID=Gchil7447.t1|Name=Gchil7447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000007_pilon:1245827..1246936- (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGGCCGGCGTTTCTACTAGGCACGCCGCTACTCGGCCGAGATTC
GCATCGACCTATGCTGTGTTCCAATCGCGTTGCGATATCGATGAAGCTTA
GACGCGGCGTCAAATACAACGAAGCTTTTCGCCGAGATAGAAATATATTC
CGCCCGGATCCCGAAAGCATATCGCGTTTCGACTCGCCGAACGCCCAAGG
TGTGATAGAAGGAAACGCTGCAGACCAAAACGTTCTGCAGGATAAGTTTT
CTGAAGAAAGTTTCCAAAGAATCGACTCCGGAAATGGGGTGCCTCCGAAT
GGAAACGGGGATGGGAATGAAGGTAATGGTCCGAATTGGGAAGATGAATC
CGAAGAACCAGAGGAAGAGGTAGGTTCTGGTCAAGTCGCTCGAGAAACCG
TGACTGACGAACATGGTAAGCGACTGAGGGAGGTGTACGCCATGCCCATC
CTTGGGGGAATTGCACGTCGGTGGCCGGCGCTGCGCTTTCGACTAATGGC
TAATTCACGACTTCCTCTTCAGATGGGAGTGGAGTTGGGTATTGGATTCA
CTACGAAGACGGTGGCTGAAGTGCAGGGAAGAAAAGGTCGCTTTTGGAAC
GAGTTTGATTTTTATCTCAGCGACATCGCTCTTGAGCTATTTGGTGACGC
GATGCTTGTGTGGTTACTTAGCCCAGTGGCTATGGTAGGAGGCCCCATAC
GGACACTGCCGCGACACGCCGGGCAGGTGGGAAACTTCATGCTAACTGAG
AGAATAGTAGCATTCGTGTGGAAAGGCATACAGTTTGGAATCGTTGGGTT
CTCGTCGTCTATGGTTGGGCATGGACTAACGAGCTGGCTGGTAAAAGTGA
GAAATGAGAGCGGAAACAAGATCGGCAATGTGAAACTGGCTCCGGTGGTA
CCGAACAGCATAGCTTGGGGCTCATTTTTAATGGTGAATTCTAACACTAG
GTACCAGGCTGTGAACTGCATCGAACAACGAGTCTTGGATCAGGTGTTCG
GAGCGAATGCGGCGCTTCTCGGACTAGTGACGTTTGCGTTGCGCGCTACC
AACAGCTACATCGGCAGCGCTTGGTGGTTGCCGTGGGCAAGGCAATGGGG
ACTTCAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000007_pilon:1245827..1246936-

>Gchil7447.t1 ID=Gchil7447.t1|Name=Gchil7447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000007_pilon:1245827..1246936- (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGGCCGGCGTTTCTACTAGGCACGCCGCTACTCGGCCGAGATTC
GCATCGACCTATGCTGTGTTCCAATCGCGTTGCGATATCGATGAAGCTTA
GACGCGGCGTCAAATACAACGAAGCTTTTCGCCGAGATAGAAATATATTC
CGCCCGGATCCCGAAAGCATATCGCGTTTCGACTCGCCGAACGCCCAAGG
TGTGATAGAAGGAAACGCTGCAGACCAAAACGTTCTGCAGGATAAGTTTT
CTGAAGAAAGTTTCCAAAGAATCGACTCCGGAAATGGGGTGCCTCCGAAT
GGAAACGGGGATGGGAATGAAGGTAATGGTCCGAATTGGGAAGATGAATC
CGAAGAACCAGAGGAAGAGGTAGGTTCTGGTCAAGTCGCTCGAGAAACCG
TGACTGACGAACATGGTAAGCGACTGAGGGAGGTGTACGCCATGCCCATC
CTTGGGGGAATTGCACGTCGGTGGCCGGCGCTGCGCTTTCGACTAATGGC
TAATTCACGACTTCCTCTTCAGATGGGAGTGGAGTTGGGTATTGGATTCA
CTACGAAGACGGTGGCTGAAGTGCAGGGAAGAAAAGGTCGCTTTTGGAAC
GAGTTTGATTTTTATCTCAGCGACATCGCTCTTGAGCTATTTGGTGACGC
GATGCTTGTGTGGTTACTTAGCCCAGTGGCTATGGTAGGAGGCCCCATAC
GGACACTGCCGCGACACGCCGGGCAGGTGGGAAACTTCATGCTAACTGAG
AGAATAGTAGCATTCGTGTGGAAAGGCATACAGTTTGGAATCGTTGGGTT
CTCGTCGTCTATGGTTGGGCATGGACTAACGAGCTGGCTGGTAAAAGTGA
GAAATGAGAGCGGAAACAAGATCGGCAATGTGAAACTGGCTCCGGTGGTA
CCGAACAGCATAGCTTGGGGCTCATTTTTAATGGTGAATTCTAACACTAG
GTACCAGGCTGTGAACTGCATCGAACAACGAGTCTTGGATCAGGTGTTCG
GAGCGAATGCGGCGCTTCTCGGACTAGTGACGTTTGCGTTGCGCGCTACC
AACAGCTACATCGGCAGCGCTTGGTGGTTGCCGTGGGCAAGGCAATGGGG
ACTTCAGTAG
back to top