Gchil1129.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1129.t1
Unique NameGchil1129.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:60063..61535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35668
Preferred nameatpF
PFAMsATP-synt_B
Max annot lvl2759|Eukaryota
KEGG koko:K02109
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Evalue2.75e-32
EggNOG OGs2CZSM@1|root,2SBID@2759|Eukaryota
DescriptionATP synthesis coupled proton transport
COG categoryA
BRITEko00000,ko00001,ko00002,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1129Gchil1129Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 60063..61535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1129.t1Gchil1129.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 60063..61535 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1129.t1.start1Gchil1129.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 60063..60065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1129.t1.CDS1Gchil1129.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 60063..60213 +
Gchil1129.t1.CDS2Gchil1129.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 60982..61535 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1129.t1.exon1Gchil1129.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 60063..60213 +
Gchil1129.t1.exon2Gchil1129.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 60982..61535 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1129.t1.intron1Gchil1129.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000237_pilon 60214..60981 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1129.t1.stop1Gchil1129.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 61533..61535 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1129.t1 ID=Gchil1129.t1|Name=Gchil1129.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=235bp
MDSIISAASVIAAGLAVGLAAIGPGIGQGSAAANAVEGIARQPEVEGKIR
DKMESFMQVFNAIVNFDTNYNLSIRFNTDFLEANVINILLLLSGLIYVLK
EFLGSILVDRQEKVLFAIQESEERLQQANLRLSESEKQLAQTQMVVTQII
KEAEITAQKVRQSILDQGKADVEKLIAASKDSITTAETQIKQQIQLQVTS
LAIKRVTMQLQDQITPTIQTKIIDNNIAQLGGYL*
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spliced messenger RNA

>Gchil1129.t1 ID=Gchil1129.t1|Name=Gchil1129.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000237_pilon:60063..61535+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTATTATTTCTGCTGCTTCAGTTATAGCTGCTGGTCTTGCTGT
AGGTCTTGCCGCTATTGGACCTGGAATTGGTCAAGGTAGTGCTGCAGCTA
ACGCTGTAGAAGGTATTGCTAGACAGCCAGAGGTTGAAGGTAAAATTCGA
GATAAAATGGAAAGCTTTATGCAGGTTTTTAATGCAATTGTAAACTTCGA
TACAAATTATAATCTAAGTATTAGGTTTAATACAGATTTTTTGGAAGCTA
ATGTCATTAATATTTTATTACTACTGTCAGGTCTTATATATGTCTTAAAA
GAGTTCTTAGGCTCTATCTTGGTCGACAGACAAGAAAAAGTTTTATTCGC
TATACAAGAATCAGAAGAACGTTTACAGCAAGCTAATTTACGATTAAGTG
AATCAGAGAAACAATTAGCTCAAACTCAAATGGTTGTTACTCAAATTATC
AAAGAAGCAGAGATAACTGCTCAAAAAGTTAGGCAATCTATATTAGATCA
AGGAAAAGCAGATGTAGAAAAGTTAATAGCGGCTAGTAAAGACAGTATTA
CAACGGCTGAAACCCAAATTAAACAACAAATTCAGCTTCAGGTTACGTCT
TTAGCGATAAAAAGAGTAACCATGCAACTGCAAGATCAAATTACTCCTAC
TATTCAGACTAAAATTATTGATAATAATATTGCTCAATTAGGAGGCTATC
TATGA
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protein sequence of Gchil1129.t1

>Gchil1129.t1 ID=Gchil1129.t1|Name=Gchil1129.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=235bp
MDSIISAASVIAAGLAVGLAAIGPGIGQGSAAANAVEGIARQPEVEGKIR
DKMESFMQVFNAIVNFDTNYNLSIRFNTDFLEANVINILLLLSGLIYVLK
EFLGSILVDRQEKVLFAIQESEERLQQANLRLSESEKQLAQTQMVVTQII
KEAEITAQKVRQSILDQGKADVEKLIAASKDSITTAETQIKQQIQLQVTS
LAIKRVTMQLQDQITPTIQTKIIDNNIAQLGGYL*
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mRNA from alignment at tig00000237_pilon:60063..61535+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1129.t1 ID=Gchil1129.t1|Name=Gchil1129.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000237_pilon:60063..61535+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCTATTATTTCTGCTGCTTCAGTTATAGCTGCTGGTCTTGCTGT
AGGTCTTGCCGCTATTGGACCTGGAATTGGTCAAGGTAGTGCTGCAGCTA
ACGCTGTAGAAGGTATTGCTAGACAGCCAGAGGTTGAAGGTAAAATTCGA
GGTACATTACTATTAAGTTTAGCTTTTATGGAGTCTTTAACGATATATGG
TTTAGTTGTTGCATTATCGCTTTTATTTGCGAACCCTTATACAGGTTAAA
TTAGGGATCTACGCTTAGTTTTTATATTTCTATCTCTAGATATAGAATAA
AAAACTAAGCGTTTTATAAAGTTATAATTATGAAATTTTTGTTTAAAGTA
TACAATCTACAATTAATATAAATAGGTACATGATTGTCTTTCCATTTTTA
TTATTTCAAATGTTAAGTACAGAGACAGAGGGAGGTTTGTTTGACTTTAA
TGCAACATTGCCTTTAATGGCATTACAGTTTATTACTTTAACTGTTGTAT
TAAATTTTATTTTTTACAAGCCAGTCACTAGTGTGCTTGATGAACGAGAT
GAATATATTCGCAATAGTTTAACGACAGCTTCTGCTTCTTTAGTAAAAGC
TGATCAATTGACAAAAACATATGAGCAACAGTTAGCAGAGTCAAGAAAAA
AAGCCCAAGAAATCATTAAAGTTGCGCAGGAACAAGCACAGCAAGTAGTA
TCTGTTAAGATAAAAGACGCTCAAGCGGATGGAGAGAAACTAGTTTCTGA
AGCTTTCCATCAGTTAAGTATTCAAAAAGAAGATGCTTTAAAAACGCTTG
AAACGCAAGTTGATACTTTAAGTGATCTAATTAAATTAAAACTATTAAAT
GATTAATATGTGTTATAACTATAAAAATTTGTGACTAATTTAAATAATTT
TTAATATTGGGATATATAGATAAAATGGAAAGCTTTATGCAGGTTTTTAA
TGCAATTGTAAACTTCGATACAAATTATAATCTAAGTATTAGGTTTAATA
CAGATTTTTTGGAAGCTAATGTCATTAATATTTTATTACTACTGTCAGGT
CTTATATATGTCTTAAAAGAGTTCTTAGGCTCTATCTTGGTCGACAGACA
AGAAAAAGTTTTATTCGCTATACAAGAATCAGAAGAACGTTTACAGCAAG
CTAATTTACGATTAAGTGAATCAGAGAAACAATTAGCTCAAACTCAAATG
GTTGTTACTCAAATTATCAAAGAAGCAGAGATAACTGCTCAAAAAGTTAG
GCAATCTATATTAGATCAAGGAAAAGCAGATGTAGAAAAGTTAATAGCGG
CTAGTAAAGACAGTATTACAACGGCTGAAACCCAAATTAAACAACAAATT
CAGCTTCAGGTTACGTCTTTAGCGATAAAAAGAGTAACCATGCAACTGCA
AGATCAAATTACTCCTACTATTCAGACTAAAATTATTGATAATAATATTG
CTCAATTAGGAGGCTATCTATGA
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Coding sequence (CDS) from alignment at tig00000237_pilon:60063..61535+

>Gchil1129.t1 ID=Gchil1129.t1|Name=Gchil1129.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000237_pilon:60063..61535+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCTATTATTTCTGCTGCTTCAGTTATAGCTGCTGGTCTTGCTGT
AGGTCTTGCCGCTATTGGACCTGGAATTGGTCAAGGTAGTGCTGCAGCTA
ACGCTGTAGAAGGTATTGCTAGACAGCCAGAGGTTGAAGGTAAAATTCGA
GATAAAATGGAAAGCTTTATGCAGGTTTTTAATGCAATTGTAAACTTCGA
TACAAATTATAATCTAAGTATTAGGTTTAATACAGATTTTTTGGAAGCTA
ATGTCATTAATATTTTATTACTACTGTCAGGTCTTATATATGTCTTAAAA
GAGTTCTTAGGCTCTATCTTGGTCGACAGACAAGAAAAAGTTTTATTCGC
TATACAAGAATCAGAAGAACGTTTACAGCAAGCTAATTTACGATTAAGTG
AATCAGAGAAACAATTAGCTCAAACTCAAATGGTTGTTACTCAAATTATC
AAAGAAGCAGAGATAACTGCTCAAAAAGTTAGGCAATCTATATTAGATCA
AGGAAAAGCAGATGTAGAAAAGTTAATAGCGGCTAGTAAAGACAGTATTA
CAACGGCTGAAACCCAAATTAAACAACAAATTCAGCTTCAGGTTACGTCT
TTAGCGATAAAAAGAGTAACCATGCAACTGCAAGATCAAATTACTCCTAC
TATTCAGACTAAAATTATTGATAATAATATTGCTCAATTAGGAGGCTATC
TATGA
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