Gchil2158.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2158.t1
Unique NameGchil2158.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:82452..83674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707450.1
PFAMsperoxidase
Max annot lvl2759|Eukaryota
Evalue1.76e-57
EggNOG OGs2DJYV@1|root,2S61P@2759|Eukaryota
DescriptionPeroxidase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2158Gchil2158Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 82452..83674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2158.t1Gchil2158.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 82452..83674 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2158.t1.stop1Gchil2158.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 82452..82454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2158.t1.CDS1Gchil2158.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 82452..83290 -
Gchil2158.t1.CDS2Gchil2158.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 83467..83490 -
Gchil2158.t1.CDS3Gchil2158.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 83602..83674 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2158.t1.exon1Gchil2158.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 82452..83290 -
Gchil2158.t1.exon2Gchil2158.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 83467..83490 -
Gchil2158.t1.exon3Gchil2158.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 83602..83674 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2158.t1.intron1Gchil2158.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 83291..83466 -
Gchil2158.t1.intron2Gchil2158.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 83491..83601 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2158.t1.start1Gchil2158.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 83672..83674 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2158.t1 ID=Gchil2158.t1|Name=Gchil2158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp
MVTSLLPQMSDAAVSIDTERFGDKELKVSAINKVKQNIRNALTQRPELLP
YFFQLTLHDALTFNPETFDGGPNGSLRFELNRETNKELQTAHEAIESIRT
LQRQDMSYADTCAFAGAVAVEITGGPRIVIQLGREDASEADPEGKTGLFK
PGASASELKTAFEGAGLIGARDVVLFHGAIGSLADIGQNRAAKMKSVAIG
EDDEEEFDDLDDVTYGKVTRSKRGAVLVSSNVSQLTLGGQKFSNAYLAAI
LKAKDPTQLSQRDQVILGDKQMLAEVQKYAGNNSKFTNDVADLFQHISLL
GSSYESLKLQS*
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spliced messenger RNA

>Gchil2158.t1 ID=Gchil2158.t1|Name=Gchil2158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000228_pilon:82452..83674- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACATCATTGCTACCTCAGATGTCAGATGCAGCAGTGAGTATCGA
CACTGAGAGGTTCGGAGACAAGGAGCTGAAAGTGAGCGCTATTAACAAGG
TGAAGCAAAACATACGTAATGCGCTGACACAGAGGCCAGAACTCCTGCCA
TACTTCTTTCAATTGACCTTACATGATGCGTTGACATTCAATCCAGAAAC
TTTTGACGGAGGACCAAATGGAAGCTTGCGATTCGAACTCAATCGGGAAA
CGAACAAAGAACTACAGACGGCTCACGAAGCTATAGAATCCATCCGTACC
CTACAGCGTCAAGACATGAGCTATGCTGACACTTGTGCCTTTGCGGGAGC
TGTTGCCGTGGAGATCACAGGAGGTCCTCGCATTGTGATCCAGCTTGGTC
GTGAAGATGCCAGTGAGGCAGATCCCGAAGGCAAGACTGGCCTTTTTAAG
CCTGGGGCCTCTGCCAGCGAGTTAAAAACGGCATTCGAGGGGGCTGGCCT
CATTGGAGCTCGAGATGTTGTTTTGTTTCACGGGGCAATCGGGTCCCTTG
CTGACATAGGCCAGAATCGAGCTGCGAAAATGAAATCCGTGGCCATAGGA
GAAGACGACGAAGAAGAATTTGATGACCTTGACGATGTGACATACGGAAA
GGTTACGAGGTCAAAACGGGGAGCAGTACTAGTCTCTTCTAATGTTTCAC
AGCTAACTCTTGGGGGACAAAAGTTCAGTAATGCATATCTTGCCGCGATC
CTGAAAGCCAAAGACCCCACTCAACTATCGCAGCGCGATCAAGTTATTCT
TGGGGATAAACAAATGCTTGCAGAAGTTCAGAAATATGCAGGAAACAACT
CCAAGTTCACAAATGATGTGGCTGACCTGTTTCAGCACATATCTCTTCTA
GGAAGCTCCTACGAGTCACTCAAACTCCAGAGCTAG
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protein sequence of Gchil2158.t1

>Gchil2158.t1 ID=Gchil2158.t1|Name=Gchil2158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MVTSLLPQMSDAAVSIDTERFGDKELKVSAINKVKQNIRNALTQRPELLP
YFFQLTLHDALTFNPETFDGGPNGSLRFELNRETNKELQTAHEAIESIRT
LQRQDMSYADTCAFAGAVAVEITGGPRIVIQLGREDASEADPEGKTGLFK
PGASASELKTAFEGAGLIGARDVVLFHGAIGSLADIGQNRAAKMKSVAIG
EDDEEEFDDLDDVTYGKVTRSKRGAVLVSSNVSQLTLGGQKFSNAYLAAI
LKAKDPTQLSQRDQVILGDKQMLAEVQKYAGNNSKFTNDVADLFQHISLL
GSSYESLKLQS*
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mRNA from alignment at tig00000228_pilon:82452..83674-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2158.t1 ID=Gchil2158.t1|Name=Gchil2158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1223bp|location=Sequence derived from alignment at tig00000228_pilon:82452..83674- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGACATCATTGCTACCTCAGATGTCAGATGCAGCAGTGAGTATCGA
CACTGAGAGGTTCGGAGACAAGGGTAAGTTTTTCTTGGACTGAGCATCAA
AAACAAAGAAAGTCCCCCCAAGGTTCTGCACTCAGAAAGGAGACCTTCTA
ACCGTCCACATTGCCTATCAAACTCATGACACAGAGCTGAAAGTGAGCGC
TATTAACAGTAAGTCTATGGACCTGTTTCTCATGTCGAAACGCAAGGACA
TTTCCCACGAGCAGCATAGTGCATGAAATGCTGCTCACCACGAGTGTCCC
GAGTTCTGACCACTGACTTCTACATTCGTTTTCTCTTGGTGTCAATCATA
TTCGGATTAAACTCATCAACGTTGAACTCCTCAGAGGTGAAGCAAAACAT
ACGTAATGCGCTGACACAGAGGCCAGAACTCCTGCCATACTTCTTTCAAT
TGACCTTACATGATGCGTTGACATTCAATCCAGAAACTTTTGACGGAGGA
CCAAATGGAAGCTTGCGATTCGAACTCAATCGGGAAACGAACAAAGAACT
ACAGACGGCTCACGAAGCTATAGAATCCATCCGTACCCTACAGCGTCAAG
ACATGAGCTATGCTGACACTTGTGCCTTTGCGGGAGCTGTTGCCGTGGAG
ATCACAGGAGGTCCTCGCATTGTGATCCAGCTTGGTCGTGAAGATGCCAG
TGAGGCAGATCCCGAAGGCAAGACTGGCCTTTTTAAGCCTGGGGCCTCTG
CCAGCGAGTTAAAAACGGCATTCGAGGGGGCTGGCCTCATTGGAGCTCGA
GATGTTGTTTTGTTTCACGGGGCAATCGGGTCCCTTGCTGACATAGGCCA
GAATCGAGCTGCGAAAATGAAATCCGTGGCCATAGGAGAAGACGACGAAG
AAGAATTTGATGACCTTGACGATGTGACATACGGAAAGGTTACGAGGTCA
AAACGGGGAGCAGTACTAGTCTCTTCTAATGTTTCACAGCTAACTCTTGG
GGGACAAAAGTTCAGTAATGCATATCTTGCCGCGATCCTGAAAGCCAAAG
ACCCCACTCAACTATCGCAGCGCGATCAAGTTATTCTTGGGGATAAACAA
ATGCTTGCAGAAGTTCAGAAATATGCAGGAAACAACTCCAAGTTCACAAA
TGATGTGGCTGACCTGTTTCAGCACATATCTCTTCTAGGAAGCTCCTACG
AGTCACTCAAACTCCAGAGCTAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:82452..83674-

>Gchil2158.t1 ID=Gchil2158.t1|Name=Gchil2158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000228_pilon:82452..83674- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGACATCATTGCTACCTCAGATGTCAGATGCAGCAGTGAGTATCGA
CACTGAGAGGTTCGGAGACAAGGAGCTGAAAGTGAGCGCTATTAACAAGG
TGAAGCAAAACATACGTAATGCGCTGACACAGAGGCCAGAACTCCTGCCA
TACTTCTTTCAATTGACCTTACATGATGCGTTGACATTCAATCCAGAAAC
TTTTGACGGAGGACCAAATGGAAGCTTGCGATTCGAACTCAATCGGGAAA
CGAACAAAGAACTACAGACGGCTCACGAAGCTATAGAATCCATCCGTACC
CTACAGCGTCAAGACATGAGCTATGCTGACACTTGTGCCTTTGCGGGAGC
TGTTGCCGTGGAGATCACAGGAGGTCCTCGCATTGTGATCCAGCTTGGTC
GTGAAGATGCCAGTGAGGCAGATCCCGAAGGCAAGACTGGCCTTTTTAAG
CCTGGGGCCTCTGCCAGCGAGTTAAAAACGGCATTCGAGGGGGCTGGCCT
CATTGGAGCTCGAGATGTTGTTTTGTTTCACGGGGCAATCGGGTCCCTTG
CTGACATAGGCCAGAATCGAGCTGCGAAAATGAAATCCGTGGCCATAGGA
GAAGACGACGAAGAAGAATTTGATGACCTTGACGATGTGACATACGGAAA
GGTTACGAGGTCAAAACGGGGAGCAGTACTAGTCTCTTCTAATGTTTCAC
AGCTAACTCTTGGGGGACAAAAGTTCAGTAATGCATATCTTGCCGCGATC
CTGAAAGCCAAAGACCCCACTCAACTATCGCAGCGCGATCAAGTTATTCT
TGGGGATAAACAAATGCTTGCAGAAGTTCAGAAATATGCAGGAAACAACT
CCAAGTTCACAAATGATGTGGCTGACCTGTTTCAGCACATATCTCTTCTA
GGAAGCTCCTACGAGTCACTCAAACTCCAGAGCTAG
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