Gchil2218.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2218.t1
Unique NameGchil2218.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:334649..336196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog368408.Tpen_0304
PFAMsAAA,CDC48_2,CDC48_N,Vps4_C
Max annot lvl28889|Crenarchaeota
KEGG koko:K13525
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
Evalue2.47e-35
EggNOG OGsCOG0464@1|root,arCOG01308@2157|Archaea,2XPPI@28889|Crenarchaeota
DescriptionCell division protein 48 (CDC48), domain 2
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2218Gchil2218Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 334649..336196 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2218.t1.stop1Gchil2218.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 334649..334651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2218.t1.CDS1Gchil2218.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 334649..336196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2218.t1.exon1Gchil2218.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 334649..336196 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2218.t1.start1Gchil2218.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 336194..336196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2218.t1Gchil2218.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 334649..336196 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2218.t1 ID=Gchil2218.t1|Name=Gchil2218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=516bp
MARQGPLLRLTARTLVFRLSWHSRSARTASAALLRDYFLRSELPSLGTQY
ELPFLPQPFSVVVERCEPSDATHTAEDTNTFLLPPIPPSLNSYAPLHFDT
SPPLHAVLQRALANEPFAAKSILLLSEPGGGKSTVAASAVLRCKATLIRL
QPTHLSVSEAPALLKALKYYASAAIASAPSVLVLDDAHLTFAPFLNHYAS
TLLAFRHHVRDKLGIVLLVLAPTRTDLHQKVAGACDLVLSLPLRVTRMQR
PKVDKQHLTKSWKRVNAKLPGAEEAERYMKRLLYHPLVLTERLKKLGVHP
PRALLLYGAPGTGKTSLIRAAAAATQTRLISLQAAALARGEVGESERLLR
FHFEQAAADPPSLIFLDEIDALFASSMKRLPCVLGTVLDNLSPGVKVVAA
TNTPWMVSKSLLRPGRFDRCILVPLPSSEERRQIGAVFAERMELEESLAK
EVCDRAEKAEGFTGADIQGACRRAALSALSEKRDIDVQDVHTGFENVNAS
VDQSMAKTITEWSVP*
back to top

spliced messenger RNA

>Gchil2218.t1 ID=Gchil2218.t1|Name=Gchil2218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000228_pilon:334649..336196- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGACAAGGCCCTCTGCTACGCCTCACTGCCCGAACGCTCGTATT
TCGCCTCAGCTGGCATTCTCGTAGCGCTCGAACAGCGAGCGCCGCCCTTC
TCCGCGACTACTTTCTCCGTAGCGAGCTTCCGTCCCTAGGCACACAGTAT
GAGCTCCCGTTTCTTCCACAACCGTTCTCAGTAGTTGTGGAGCGATGTGA
GCCCAGCGATGCGACGCACACGGCCGAGGATACGAATACTTTCTTGCTAC
CACCTATACCACCCTCGCTAAATTCCTACGCACCTCTTCATTTCGATACT
TCACCGCCGTTGCACGCGGTATTGCAGAGGGCGTTGGCGAACGAGCCGTT
TGCAGCCAAATCGATCCTCCTGCTTTCCGAGCCTGGCGGTGGCAAGTCCA
CCGTTGCTGCCTCTGCCGTTCTGCGCTGTAAAGCGACCTTAATTCGATTG
CAGCCCACACATCTTAGCGTTAGCGAAGCTCCGGCCTTGTTGAAAGCTCT
AAAGTATTATGCGAGTGCCGCTATTGCATCTGCGCCGTCAGTGCTGGTCT
TAGACGACGCTCACCTTACGTTTGCGCCCTTCCTCAACCACTATGCATCG
ACTCTTCTGGCATTTCGTCATCACGTCAGAGATAAGTTGGGTATTGTCTT
GCTCGTTTTGGCTCCCACTCGCACAGACTTGCACCAAAAAGTGGCTGGCG
CCTGCGATCTTGTGCTCTCTCTACCTCTACGCGTTACTCGCATGCAACGC
CCGAAGGTAGATAAGCAGCACCTTACAAAATCATGGAAACGAGTTAACGC
TAAGCTTCCCGGCGCAGAAGAAGCGGAAAGATACATGAAGCGACTTTTGT
ATCACCCGCTCGTGCTCACAGAGCGACTGAAAAAGTTAGGGGTTCACCCC
CCACGCGCATTGCTTTTGTACGGGGCGCCTGGGACTGGAAAGACTTCGCT
CATAAGAGCCGCTGCCGCCGCCACGCAAACCCGTCTCATATCTTTGCAGG
CAGCAGCTTTGGCTCGCGGAGAAGTCGGTGAGTCGGAGCGTCTTTTGCGA
TTCCACTTCGAACAAGCCGCTGCGGATCCACCTTCTTTGATATTTCTCGA
TGAGATTGACGCGCTCTTCGCTTCTTCAATGAAGAGATTGCCTTGCGTAT
TGGGCACGGTGTTGGATAATCTTTCGCCAGGAGTCAAAGTAGTGGCCGCT
ACGAATACGCCTTGGATGGTTTCGAAATCACTTTTACGTCCTGGAAGGTT
TGACAGATGTATTTTGGTTCCACTTCCTAGCTCTGAAGAGCGAAGACAAA
TAGGAGCTGTGTTTGCAGAACGCATGGAACTGGAGGAATCACTTGCGAAA
GAGGTTTGCGATCGAGCGGAGAAAGCGGAGGGGTTCACTGGAGCCGATAT
CCAGGGCGCTTGTCGGCGAGCCGCACTCAGCGCGTTGAGCGAAAAAAGAG
ATATCGACGTGCAAGATGTTCATACTGGCTTCGAAAATGTGAACGCTAGT
GTTGACCAAAGCATGGCTAAGACAATTACAGAGTGGAGCGTCCCGTAG
back to top

protein sequence of Gchil2218.t1

>Gchil2218.t1 ID=Gchil2218.t1|Name=Gchil2218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=516bp
MARQGPLLRLTARTLVFRLSWHSRSARTASAALLRDYFLRSELPSLGTQY
ELPFLPQPFSVVVERCEPSDATHTAEDTNTFLLPPIPPSLNSYAPLHFDT
SPPLHAVLQRALANEPFAAKSILLLSEPGGGKSTVAASAVLRCKATLIRL
QPTHLSVSEAPALLKALKYYASAAIASAPSVLVLDDAHLTFAPFLNHYAS
TLLAFRHHVRDKLGIVLLVLAPTRTDLHQKVAGACDLVLSLPLRVTRMQR
PKVDKQHLTKSWKRVNAKLPGAEEAERYMKRLLYHPLVLTERLKKLGVHP
PRALLLYGAPGTGKTSLIRAAAAATQTRLISLQAAALARGEVGESERLLR
FHFEQAAADPPSLIFLDEIDALFASSMKRLPCVLGTVLDNLSPGVKVVAA
TNTPWMVSKSLLRPGRFDRCILVPLPSSEERRQIGAVFAERMELEESLAK
EVCDRAEKAEGFTGADIQGACRRAALSALSEKRDIDVQDVHTGFENVNAS
VDQSMAKTITEWSVP*
back to top

mRNA from alignment at tig00000228_pilon:334649..336196-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2218.t1 ID=Gchil2218.t1|Name=Gchil2218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000228_pilon:334649..336196- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGACAAGGCCCTCTGCTACGCCTCACTGCCCGAACGCTCGTATT
TCGCCTCAGCTGGCATTCTCGTAGCGCTCGAACAGCGAGCGCCGCCCTTC
TCCGCGACTACTTTCTCCGTAGCGAGCTTCCGTCCCTAGGCACACAGTAT
GAGCTCCCGTTTCTTCCACAACCGTTCTCAGTAGTTGTGGAGCGATGTGA
GCCCAGCGATGCGACGCACACGGCCGAGGATACGAATACTTTCTTGCTAC
CACCTATACCACCCTCGCTAAATTCCTACGCACCTCTTCATTTCGATACT
TCACCGCCGTTGCACGCGGTATTGCAGAGGGCGTTGGCGAACGAGCCGTT
TGCAGCCAAATCGATCCTCCTGCTTTCCGAGCCTGGCGGTGGCAAGTCCA
CCGTTGCTGCCTCTGCCGTTCTGCGCTGTAAAGCGACCTTAATTCGATTG
CAGCCCACACATCTTAGCGTTAGCGAAGCTCCGGCCTTGTTGAAAGCTCT
AAAGTATTATGCGAGTGCCGCTATTGCATCTGCGCCGTCAGTGCTGGTCT
TAGACGACGCTCACCTTACGTTTGCGCCCTTCCTCAACCACTATGCATCG
ACTCTTCTGGCATTTCGTCATCACGTCAGAGATAAGTTGGGTATTGTCTT
GCTCGTTTTGGCTCCCACTCGCACAGACTTGCACCAAAAAGTGGCTGGCG
CCTGCGATCTTGTGCTCTCTCTACCTCTACGCGTTACTCGCATGCAACGC
CCGAAGGTAGATAAGCAGCACCTTACAAAATCATGGAAACGAGTTAACGC
TAAGCTTCCCGGCGCAGAAGAAGCGGAAAGATACATGAAGCGACTTTTGT
ATCACCCGCTCGTGCTCACAGAGCGACTGAAAAAGTTAGGGGTTCACCCC
CCACGCGCATTGCTTTTGTACGGGGCGCCTGGGACTGGAAAGACTTCGCT
CATAAGAGCCGCTGCCGCCGCCACGCAAACCCGTCTCATATCTTTGCAGG
CAGCAGCTTTGGCTCGCGGAGAAGTCGGTGAGTCGGAGCGTCTTTTGCGA
TTCCACTTCGAACAAGCCGCTGCGGATCCACCTTCTTTGATATTTCTCGA
TGAGATTGACGCGCTCTTCGCTTCTTCAATGAAGAGATTGCCTTGCGTAT
TGGGCACGGTGTTGGATAATCTTTCGCCAGGAGTCAAAGTAGTGGCCGCT
ACGAATACGCCTTGGATGGTTTCGAAATCACTTTTACGTCCTGGAAGGTT
TGACAGATGTATTTTGGTTCCACTTCCTAGCTCTGAAGAGCGAAGACAAA
TAGGAGCTGTGTTTGCAGAACGCATGGAACTGGAGGAATCACTTGCGAAA
GAGGTTTGCGATCGAGCGGAGAAAGCGGAGGGGTTCACTGGAGCCGATAT
CCAGGGCGCTTGTCGGCGAGCCGCACTCAGCGCGTTGAGCGAAAAAAGAG
ATATCGACGTGCAAGATGTTCATACTGGCTTCGAAAATGTGAACGCTAGT
GTTGACCAAAGCATGGCTAAGACAATTACAGAGTGGAGCGTCCCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000228_pilon:334649..336196-

>Gchil2218.t1 ID=Gchil2218.t1|Name=Gchil2218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000228_pilon:334649..336196- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGACAAGGCCCTCTGCTACGCCTCACTGCCCGAACGCTCGTATT
TCGCCTCAGCTGGCATTCTCGTAGCGCTCGAACAGCGAGCGCCGCCCTTC
TCCGCGACTACTTTCTCCGTAGCGAGCTTCCGTCCCTAGGCACACAGTAT
GAGCTCCCGTTTCTTCCACAACCGTTCTCAGTAGTTGTGGAGCGATGTGA
GCCCAGCGATGCGACGCACACGGCCGAGGATACGAATACTTTCTTGCTAC
CACCTATACCACCCTCGCTAAATTCCTACGCACCTCTTCATTTCGATACT
TCACCGCCGTTGCACGCGGTATTGCAGAGGGCGTTGGCGAACGAGCCGTT
TGCAGCCAAATCGATCCTCCTGCTTTCCGAGCCTGGCGGTGGCAAGTCCA
CCGTTGCTGCCTCTGCCGTTCTGCGCTGTAAAGCGACCTTAATTCGATTG
CAGCCCACACATCTTAGCGTTAGCGAAGCTCCGGCCTTGTTGAAAGCTCT
AAAGTATTATGCGAGTGCCGCTATTGCATCTGCGCCGTCAGTGCTGGTCT
TAGACGACGCTCACCTTACGTTTGCGCCCTTCCTCAACCACTATGCATCG
ACTCTTCTGGCATTTCGTCATCACGTCAGAGATAAGTTGGGTATTGTCTT
GCTCGTTTTGGCTCCCACTCGCACAGACTTGCACCAAAAAGTGGCTGGCG
CCTGCGATCTTGTGCTCTCTCTACCTCTACGCGTTACTCGCATGCAACGC
CCGAAGGTAGATAAGCAGCACCTTACAAAATCATGGAAACGAGTTAACGC
TAAGCTTCCCGGCGCAGAAGAAGCGGAAAGATACATGAAGCGACTTTTGT
ATCACCCGCTCGTGCTCACAGAGCGACTGAAAAAGTTAGGGGTTCACCCC
CCACGCGCATTGCTTTTGTACGGGGCGCCTGGGACTGGAAAGACTTCGCT
CATAAGAGCCGCTGCCGCCGCCACGCAAACCCGTCTCATATCTTTGCAGG
CAGCAGCTTTGGCTCGCGGAGAAGTCGGTGAGTCGGAGCGTCTTTTGCGA
TTCCACTTCGAACAAGCCGCTGCGGATCCACCTTCTTTGATATTTCTCGA
TGAGATTGACGCGCTCTTCGCTTCTTCAATGAAGAGATTGCCTTGCGTAT
TGGGCACGGTGTTGGATAATCTTTCGCCAGGAGTCAAAGTAGTGGCCGCT
ACGAATACGCCTTGGATGGTTTCGAAATCACTTTTACGTCCTGGAAGGTT
TGACAGATGTATTTTGGTTCCACTTCCTAGCTCTGAAGAGCGAAGACAAA
TAGGAGCTGTGTTTGCAGAACGCATGGAACTGGAGGAATCACTTGCGAAA
GAGGTTTGCGATCGAGCGGAGAAAGCGGAGGGGTTCACTGGAGCCGATAT
CCAGGGCGCTTGTCGGCGAGCCGCACTCAGCGCGTTGAGCGAAAAAAGAG
ATATCGACGTGCAAGATGTTCATACTGGCTTCGAAAATGTGAACGCTAGT
GTTGACCAAAGCATGGCTAAGACAATTACAGAGTGGAGCGTCCCGTAG
back to top