Gchil2191.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2191.t1
Unique NameGchil2191.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length522
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:227346..228911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1089550.ATTH01000001_gene1926
Preferred namedinF
PFAMsMatE
Max annot lvl976|Bacteroidetes
KEGG koko:K03327
KEGG TC2.A.66.1
Evalue4.09e-86
EggNOG OGsCOG0534@1|root,COG0534@2|Bacteria,4NG7Q@976|Bacteroidetes,1FJYR@1100069|Bacteroidetes Order II. Incertae sedis
DescriptionMatE
COG categoryV
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2191Gchil2191Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 227346..228911 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2191.t1.stop1Gchil2191.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 227346..227348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2191.t1.CDS1Gchil2191.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 227346..228911 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2191.t1.exon1Gchil2191.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 227346..228911 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2191.t1.start1Gchil2191.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 228909..228911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2191.t1Gchil2191.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 227346..228911 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2191.t1 ID=Gchil2191.t1|Name=Gchil2191.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp
MINFVSPFGPRVPAPHGLRRSLARRHSGILWLSPTRLKVQPLRRRPLFFA
ASSVSQEQPSPAASEPFQDQVVSPQTPPVVEPSSLSIADIDRSIASISLP
ALATLSLDPLVALADMACVGYLGASAIGGVGIGNNVFNLSFTCFNFLGMA
TTPAIARAFASDNHAEASRLIAQALWVALVSGVSATLILSLYTQPILTFF
GANASILPQARAYLRARIFAAPFFLAAMVGNGAFRGYQDTKTPLFVGLFA
NVLNLILYPTLIFGVGLGTRGAGMAMASGQICAGMALLMLLVKTGKLRLR
DLVSPPRADEIFPLLRTGAVLSFRTLSIFSTISYATATAAKLGTVQVAAF
EIGRQIFALFARLLDAISVAAQSLVALALGKNDYDLARRTSNRILKIGVT
MGCAFAALLMLTIRSAPRIFTSNPAVRETVSLTFPYMAFIQPINGLVFVF
DGIYTAGRKFTPLATAIFMAACCASAFLFFVRTTSMPLQYVWVGLNILMV
LRATFLGALYFTRWSPAPKPR*
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spliced messenger RNA

>Gchil2191.t1 ID=Gchil2191.t1|Name=Gchil2191.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000228_pilon:227346..228911- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAATTTCGTCTCGCCGTTCGGTCCTCGAGTCCCTGCTCCTCATGG
ACTGAGAAGATCACTGGCACGACGACACTCCGGCATTCTTTGGTTGTCTC
CAACTCGACTTAAAGTGCAGCCTTTGCGAAGAAGACCTCTCTTTTTTGCC
GCGTCTTCAGTGAGTCAAGAGCAACCATCACCGGCCGCCAGCGAACCATT
TCAGGACCAGGTTGTGAGTCCGCAGACACCACCGGTAGTGGAACCCAGCT
CTTTGTCAATTGCCGACATTGATCGTTCTATCGCCTCAATATCTCTTCCA
GCTCTTGCAACTCTTTCACTTGATCCGCTTGTTGCGCTTGCGGATATGGC
ATGCGTTGGTTATCTTGGCGCATCAGCAATAGGAGGTGTTGGTATCGGAA
ACAACGTTTTCAATCTATCGTTTACGTGCTTTAACTTCCTGGGCATGGCG
ACGACCCCGGCAATAGCGAGGGCCTTTGCAAGCGACAATCACGCAGAGGC
CTCGCGCCTCATCGCCCAGGCGTTGTGGGTAGCGCTGGTTTCTGGAGTAT
CTGCTACCCTCATTCTCTCGCTTTATACCCAACCGATACTCACGTTCTTC
GGAGCCAATGCATCCATTCTTCCTCAAGCTCGTGCGTATCTCCGAGCTAG
AATATTTGCCGCCCCTTTCTTTCTCGCGGCCATGGTTGGCAACGGGGCAT
TTCGCGGTTATCAGGACACGAAGACCCCATTGTTCGTTGGTCTTTTCGCA
AACGTCCTCAACCTCATACTATATCCTACTCTCATTTTCGGGGTAGGACT
CGGCACGCGTGGCGCTGGAATGGCAATGGCCTCAGGTCAAATATGCGCCG
GCATGGCGCTTTTGATGCTGCTCGTGAAGACAGGGAAACTTCGGCTCCGA
GACTTGGTGAGTCCTCCAAGAGCAGATGAGATTTTCCCGTTGTTGAGAAC
CGGGGCTGTTCTTTCGTTCCGAACGCTTTCAATATTTTCCACTATCTCGT
ACGCCACTGCGACTGCAGCAAAGCTCGGAACTGTTCAAGTCGCCGCTTTT
GAAATTGGGCGCCAAATCTTCGCCCTCTTCGCTCGGCTTTTGGATGCAAT
ATCAGTTGCGGCCCAATCGTTGGTTGCGCTCGCGCTTGGTAAGAACGACT
ACGATTTAGCGAGAAGGACTTCCAATCGAATTCTGAAGATCGGAGTGACC
ATGGGATGTGCTTTCGCTGCGTTACTCATGCTCACGATTCGATCAGCTCC
TCGTATTTTCACTTCCAATCCTGCGGTTCGTGAAACTGTTTCCCTGACAT
TTCCGTACATGGCTTTCATACAGCCTATAAACGGCCTTGTATTTGTGTTT
GATGGAATATACACCGCTGGCCGCAAGTTTACACCCCTCGCAACCGCAAT
ATTCATGGCTGCTTGTTGTGCTTCTGCCTTTCTTTTCTTTGTCAGAACCA
CCTCGATGCCTCTCCAGTACGTGTGGGTAGGCTTAAATATTTTGATGGTG
TTGCGGGCAACATTCCTTGGTGCGCTTTATTTTACAAGGTGGTCTCCAGC
TCCGAAACCGAGATAA
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protein sequence of Gchil2191.t1

>Gchil2191.t1 ID=Gchil2191.t1|Name=Gchil2191.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=522bp
MINFVSPFGPRVPAPHGLRRSLARRHSGILWLSPTRLKVQPLRRRPLFFA
ASSVSQEQPSPAASEPFQDQVVSPQTPPVVEPSSLSIADIDRSIASISLP
ALATLSLDPLVALADMACVGYLGASAIGGVGIGNNVFNLSFTCFNFLGMA
TTPAIARAFASDNHAEASRLIAQALWVALVSGVSATLILSLYTQPILTFF
GANASILPQARAYLRARIFAAPFFLAAMVGNGAFRGYQDTKTPLFVGLFA
NVLNLILYPTLIFGVGLGTRGAGMAMASGQICAGMALLMLLVKTGKLRLR
DLVSPPRADEIFPLLRTGAVLSFRTLSIFSTISYATATAAKLGTVQVAAF
EIGRQIFALFARLLDAISVAAQSLVALALGKNDYDLARRTSNRILKIGVT
MGCAFAALLMLTIRSAPRIFTSNPAVRETVSLTFPYMAFIQPINGLVFVF
DGIYTAGRKFTPLATAIFMAACCASAFLFFVRTTSMPLQYVWVGLNILMV
LRATFLGALYFTRWSPAPKPR*
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mRNA from alignment at tig00000228_pilon:227346..228911-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2191.t1 ID=Gchil2191.t1|Name=Gchil2191.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000228_pilon:227346..228911- (Gracilaria chilensis NLEC103_M9 male)
ATGATCAATTTCGTCTCGCCGTTCGGTCCTCGAGTCCCTGCTCCTCATGG
ACTGAGAAGATCACTGGCACGACGACACTCCGGCATTCTTTGGTTGTCTC
CAACTCGACTTAAAGTGCAGCCTTTGCGAAGAAGACCTCTCTTTTTTGCC
GCGTCTTCAGTGAGTCAAGAGCAACCATCACCGGCCGCCAGCGAACCATT
TCAGGACCAGGTTGTGAGTCCGCAGACACCACCGGTAGTGGAACCCAGCT
CTTTGTCAATTGCCGACATTGATCGTTCTATCGCCTCAATATCTCTTCCA
GCTCTTGCAACTCTTTCACTTGATCCGCTTGTTGCGCTTGCGGATATGGC
ATGCGTTGGTTATCTTGGCGCATCAGCAATAGGAGGTGTTGGTATCGGAA
ACAACGTTTTCAATCTATCGTTTACGTGCTTTAACTTCCTGGGCATGGCG
ACGACCCCGGCAATAGCGAGGGCCTTTGCAAGCGACAATCACGCAGAGGC
CTCGCGCCTCATCGCCCAGGCGTTGTGGGTAGCGCTGGTTTCTGGAGTAT
CTGCTACCCTCATTCTCTCGCTTTATACCCAACCGATACTCACGTTCTTC
GGAGCCAATGCATCCATTCTTCCTCAAGCTCGTGCGTATCTCCGAGCTAG
AATATTTGCCGCCCCTTTCTTTCTCGCGGCCATGGTTGGCAACGGGGCAT
TTCGCGGTTATCAGGACACGAAGACCCCATTGTTCGTTGGTCTTTTCGCA
AACGTCCTCAACCTCATACTATATCCTACTCTCATTTTCGGGGTAGGACT
CGGCACGCGTGGCGCTGGAATGGCAATGGCCTCAGGTCAAATATGCGCCG
GCATGGCGCTTTTGATGCTGCTCGTGAAGACAGGGAAACTTCGGCTCCGA
GACTTGGTGAGTCCTCCAAGAGCAGATGAGATTTTCCCGTTGTTGAGAAC
CGGGGCTGTTCTTTCGTTCCGAACGCTTTCAATATTTTCCACTATCTCGT
ACGCCACTGCGACTGCAGCAAAGCTCGGAACTGTTCAAGTCGCCGCTTTT
GAAATTGGGCGCCAAATCTTCGCCCTCTTCGCTCGGCTTTTGGATGCAAT
ATCAGTTGCGGCCCAATCGTTGGTTGCGCTCGCGCTTGGTAAGAACGACT
ACGATTTAGCGAGAAGGACTTCCAATCGAATTCTGAAGATCGGAGTGACC
ATGGGATGTGCTTTCGCTGCGTTACTCATGCTCACGATTCGATCAGCTCC
TCGTATTTTCACTTCCAATCCTGCGGTTCGTGAAACTGTTTCCCTGACAT
TTCCGTACATGGCTTTCATACAGCCTATAAACGGCCTTGTATTTGTGTTT
GATGGAATATACACCGCTGGCCGCAAGTTTACACCCCTCGCAACCGCAAT
ATTCATGGCTGCTTGTTGTGCTTCTGCCTTTCTTTTCTTTGTCAGAACCA
CCTCGATGCCTCTCCAGTACGTGTGGGTAGGCTTAAATATTTTGATGGTG
TTGCGGGCAACATTCCTTGGTGCGCTTTATTTTACAAGGTGGTCTCCAGC
TCCGAAACCGAGATAA
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Coding sequence (CDS) from alignment at tig00000228_pilon:227346..228911-

>Gchil2191.t1 ID=Gchil2191.t1|Name=Gchil2191.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1566bp|location=Sequence derived from alignment at tig00000228_pilon:227346..228911- (Gracilaria chilensis NLEC103_M9 male)
ATGATCAATTTCGTCTCGCCGTTCGGTCCTCGAGTCCCTGCTCCTCATGG
ACTGAGAAGATCACTGGCACGACGACACTCCGGCATTCTTTGGTTGTCTC
CAACTCGACTTAAAGTGCAGCCTTTGCGAAGAAGACCTCTCTTTTTTGCC
GCGTCTTCAGTGAGTCAAGAGCAACCATCACCGGCCGCCAGCGAACCATT
TCAGGACCAGGTTGTGAGTCCGCAGACACCACCGGTAGTGGAACCCAGCT
CTTTGTCAATTGCCGACATTGATCGTTCTATCGCCTCAATATCTCTTCCA
GCTCTTGCAACTCTTTCACTTGATCCGCTTGTTGCGCTTGCGGATATGGC
ATGCGTTGGTTATCTTGGCGCATCAGCAATAGGAGGTGTTGGTATCGGAA
ACAACGTTTTCAATCTATCGTTTACGTGCTTTAACTTCCTGGGCATGGCG
ACGACCCCGGCAATAGCGAGGGCCTTTGCAAGCGACAATCACGCAGAGGC
CTCGCGCCTCATCGCCCAGGCGTTGTGGGTAGCGCTGGTTTCTGGAGTAT
CTGCTACCCTCATTCTCTCGCTTTATACCCAACCGATACTCACGTTCTTC
GGAGCCAATGCATCCATTCTTCCTCAAGCTCGTGCGTATCTCCGAGCTAG
AATATTTGCCGCCCCTTTCTTTCTCGCGGCCATGGTTGGCAACGGGGCAT
TTCGCGGTTATCAGGACACGAAGACCCCATTGTTCGTTGGTCTTTTCGCA
AACGTCCTCAACCTCATACTATATCCTACTCTCATTTTCGGGGTAGGACT
CGGCACGCGTGGCGCTGGAATGGCAATGGCCTCAGGTCAAATATGCGCCG
GCATGGCGCTTTTGATGCTGCTCGTGAAGACAGGGAAACTTCGGCTCCGA
GACTTGGTGAGTCCTCCAAGAGCAGATGAGATTTTCCCGTTGTTGAGAAC
CGGGGCTGTTCTTTCGTTCCGAACGCTTTCAATATTTTCCACTATCTCGT
ACGCCACTGCGACTGCAGCAAAGCTCGGAACTGTTCAAGTCGCCGCTTTT
GAAATTGGGCGCCAAATCTTCGCCCTCTTCGCTCGGCTTTTGGATGCAAT
ATCAGTTGCGGCCCAATCGTTGGTTGCGCTCGCGCTTGGTAAGAACGACT
ACGATTTAGCGAGAAGGACTTCCAATCGAATTCTGAAGATCGGAGTGACC
ATGGGATGTGCTTTCGCTGCGTTACTCATGCTCACGATTCGATCAGCTCC
TCGTATTTTCACTTCCAATCCTGCGGTTCGTGAAACTGTTTCCCTGACAT
TTCCGTACATGGCTTTCATACAGCCTATAAACGGCCTTGTATTTGTGTTT
GATGGAATATACACCGCTGGCCGCAAGTTTACACCCCTCGCAACCGCAAT
ATTCATGGCTGCTTGTTGTGCTTCTGCCTTTCTTTTCTTTGTCAGAACCA
CCTCGATGCCTCTCCAGTACGTGTGGGTAGGCTTAAATATTTTGATGGTG
TTGCGGGCAACATTCCTTGGTGCGCTTTATTTTACAAGGTGGTCTCCAGC
TCCGAAACCGAGATAA
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