Gchil2153.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2153.t1
Unique NameGchil2153.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length585
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:63284..65202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005650990.1
PFAMsEMP70
Max annot lvl3041|Chlorophyta
KEGG koko:K17087
Evalue1.17e-164
EggNOG OGsKOG1278@1|root,KOG1277@2759|Eukaryota,37JU6@33090|Viridiplantae,34JJZ@3041|Chlorophyta
DescriptionBelongs to the nonaspanin (TM9SF) (TC 9.A.2) family
COG categoryU
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2153Gchil2153Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 63284..65202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2153.t1Gchil2153.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 63284..65202 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2153.t1.start1Gchil2153.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 63284..63286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2153.t1.CDS1Gchil2153.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 63284..63385 +
Gchil2153.t1.CDS2Gchil2153.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 63462..63950 +
Gchil2153.t1.CDS3Gchil2153.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 64039..65202 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2153.t1.exon1Gchil2153.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 63284..63385 +
Gchil2153.t1.exon2Gchil2153.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 63462..63950 +
Gchil2153.t1.exon3Gchil2153.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 64039..65202 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2153.t1.intron1Gchil2153.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 63386..63461 +
Gchil2153.t1.intron2Gchil2153.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 63951..64038 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2153.t1.stop1Gchil2153.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 65200..65202 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2153.t1 ID=Gchil2153.t1|Name=Gchil2153.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp
MAVPSYFFALLLLHLCMFHNRVAATRGESYEHGQSIDVWVNKIAPYSSPT
ESYEFYEKLPWCKPEKLDHRSLKLGETLAGDHLVRSSFNINFRESIHDQL
LCEQPLAPAQVNQFVYAIRKRFVYDMLIDNLPVKLFVGEISDDEGTTKIH
LYTHINFIVSFNDKHIIEASATPEKPVELSSGQHANIRFSYSVSWQETKF
PVDRRADKYRDPFHVRDREIHWFSIGNAVLIAGLLLGLLGSILLRVVRKD
FREYEALDSEEESDDYGWKLLYADVFRFPPGLSILCPFLGSGVQLLSLSC
LLLLFGALEVFHPLSRGAIYTTAVLLYAATAGIAGFASGYLYKQMGGNAW
VRNAVLTVFVFCGPTACIWVYLNAIALFYNSTRALPLWTIASVAALWAMV
TIPLTILGAIFGKNQSRPYDSLGRTTKIPREIPKSPWYRRPPFLALVCGL
MPFSSIYVELFFMFGALWGHKIFQVYEMLAIVFIILMLVTVITTASAIYF
QLVSENHKWAWSSLAYGGSVGVYIFVYSAYYYYVRSPLEGFMQANFFFGY
MWLVSYAFFLMCGTVGFFSARKFIRFLYSSIKSD*
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spliced messenger RNA

>Gchil2153.t1 ID=Gchil2153.t1|Name=Gchil2153.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00000228_pilon:63284..65202+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTTCCTTCTTATTTCTTCGCGCTTCTTCTGCTCCACTTATGTAT
GTTTCATAATCGTGTCGCTGCTACACGCGGCGAGTCTTATGAACACGGGC
AGTCCATTGATGTGTGGGTCAACAAAATAGCTCCGTATAGTTCTCCAACA
GAGAGCTACGAGTTCTACGAAAAGCTACCTTGGTGTAAACCGGAAAAGCT
TGATCATCGTTCTCTAAAACTCGGCGAAACGCTTGCTGGAGATCATCTTG
TACGCTCTTCGTTCAACATTAACTTTCGAGAATCGATACATGATCAACTC
CTTTGCGAACAGCCGCTTGCCCCGGCACAGGTTAATCAATTTGTGTATGC
CATTCGAAAACGGTTTGTGTATGACATGCTCATTGACAACTTACCGGTAA
AACTCTTTGTCGGGGAGATTTCTGATGACGAAGGCACGACTAAGATACAT
CTTTACACCCATATCAATTTCATCGTTAGTTTCAATGACAAACATATTAT
CGAAGCCTCGGCCACTCCAGAAAAACCAGTCGAACTTTCTTCAGGTCAGC
ATGCTAATATTCGCTTTTCTTACAGTGTCTCATGGCAAGAGACAAAGTTC
CCGGTCGATCGTCGAGCCGATAAATACAGAGACCCATTCCATGTGCGCGA
CCGAGAAATCCACTGGTTCAGTATAGGCAATGCCGTTCTAATCGCTGGAC
TGTTACTGGGCCTGCTTGGTTCTATTCTTCTGCGCGTGGTTCGTAAGGAC
TTCCGGGAGTACGAAGCTCTAGATTCCGAAGAAGAATCAGATGATTATGG
ATGGAAGTTGTTGTACGCAGACGTGTTTCGCTTCCCACCAGGCCTCTCTA
TCTTGTGCCCATTTCTTGGTTCTGGCGTTCAGTTGCTGAGTCTGTCGTGT
CTATTACTGCTGTTTGGCGCCTTAGAAGTCTTTCATCCTCTTTCAAGGGG
GGCAATCTACACCACCGCTGTTCTCTTGTATGCAGCGACTGCGGGTATTG
CTGGTTTCGCCAGTGGATATCTGTACAAGCAAATGGGCGGCAACGCCTGG
GTTCGAAATGCTGTGTTAACCGTGTTTGTGTTCTGCGGACCAACTGCATG
TATCTGGGTCTATCTGAATGCAATCGCCCTGTTTTACAACTCCACTCGTG
CACTTCCTCTATGGACTATCGCGTCCGTTGCAGCACTATGGGCTATGGTT
ACAATTCCTTTAACCATTCTTGGAGCTATCTTTGGAAAGAATCAGAGTCG
CCCCTACGATTCTCTGGGCAGAACGACAAAGATCCCTCGAGAAATCCCAA
AAAGTCCGTGGTATAGACGGCCCCCGTTCTTGGCACTGGTTTGTGGTTTA
ATGCCGTTTAGCTCTATATATGTTGAGCTTTTTTTCATGTTTGGTGCCTT
GTGGGGCCACAAGATCTTTCAAGTCTATGAGATGCTGGCTATTGTGTTCA
TTATTTTGATGCTGGTCACAGTGATCACAACTGCCTCTGCTATTTATTTT
CAGCTCGTGTCTGAAAACCACAAATGGGCCTGGTCAAGTCTCGCCTATGG
TGGGAGCGTTGGTGTATATATTTTCGTTTACAGCGCCTACTACTACTATG
TGCGATCACCTTTGGAGGGGTTTATGCAGGCCAACTTCTTCTTTGGCTAC
ATGTGGCTTGTTAGTTATGCGTTTTTCTTGATGTGTGGCACCGTTGGCTT
CTTTTCGGCAAGGAAGTTTATTCGCTTCCTGTACAGTTCGATCAAGAGCG
ATTAA
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protein sequence of Gchil2153.t1

>Gchil2153.t1 ID=Gchil2153.t1|Name=Gchil2153.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=585bp
MAVPSYFFALLLLHLCMFHNRVAATRGESYEHGQSIDVWVNKIAPYSSPT
ESYEFYEKLPWCKPEKLDHRSLKLGETLAGDHLVRSSFNINFRESIHDQL
LCEQPLAPAQVNQFVYAIRKRFVYDMLIDNLPVKLFVGEISDDEGTTKIH
LYTHINFIVSFNDKHIIEASATPEKPVELSSGQHANIRFSYSVSWQETKF
PVDRRADKYRDPFHVRDREIHWFSIGNAVLIAGLLLGLLGSILLRVVRKD
FREYEALDSEEESDDYGWKLLYADVFRFPPGLSILCPFLGSGVQLLSLSC
LLLLFGALEVFHPLSRGAIYTTAVLLYAATAGIAGFASGYLYKQMGGNAW
VRNAVLTVFVFCGPTACIWVYLNAIALFYNSTRALPLWTIASVAALWAMV
TIPLTILGAIFGKNQSRPYDSLGRTTKIPREIPKSPWYRRPPFLALVCGL
MPFSSIYVELFFMFGALWGHKIFQVYEMLAIVFIILMLVTVITTASAIYF
QLVSENHKWAWSSLAYGGSVGVYIFVYSAYYYYVRSPLEGFMQANFFFGY
MWLVSYAFFLMCGTVGFFSARKFIRFLYSSIKSD*
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mRNA from alignment at tig00000228_pilon:63284..65202+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2153.t1 ID=Gchil2153.t1|Name=Gchil2153.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1919bp|location=Sequence derived from alignment at tig00000228_pilon:63284..65202+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGTTCCTTCTTATTTCTTCGCGCTTCTTCTGCTCCACTTATGTAT
GTTTCATAATCGTGTCGCTGCTACACGCGGCGAGTCTTATGAACACGGGC
AGGTATGTTTGCAACATTGGGGTTTTGCACCTTGTTTGTATCTCTACCAC
GCCGTTATGCTGACACGTTCGAATGCAGTCCATTGATGTGTGGGTCAACA
AAATAGCTCCGTATAGTTCTCCAACAGAGAGCTACGAGTTCTACGAAAAG
CTACCTTGGTGTAAACCGGAAAAGCTTGATCATCGTTCTCTAAAACTCGG
CGAAACGCTTGCTGGAGATCATCTTGTACGCTCTTCGTTCAACATTAACT
TTCGAGAATCGATACATGATCAACTCCTTTGCGAACAGCCGCTTGCCCCG
GCACAGGTTAATCAATTTGTGTATGCCATTCGAAAACGGTTTGTGTATGA
CATGCTCATTGACAACTTACCGGTAAAACTCTTTGTCGGGGAGATTTCTG
ATGACGAAGGCACGACTAAGATACATCTTTACACCCATATCAATTTCATC
GTTAGTTTCAATGACAAACATATTATCGAAGCCTCGGCCACTCCAGAAAA
ACCAGTCGAACTTTCTTCAGGTCAGCATGCTAATATTCGCTTTTCTTACA
GTGTCTCATGGCAAGAGGTAAGTCCTACTTGAAGTCCTTTCGTTCGCAAT
ACATTCTCACTCTAACCTTCATACGTGCTATTAACCAACCCGTCGGTGGA
AACAGACAAAGTTCCCGGTCGATCGTCGAGCCGATAAATACAGAGACCCA
TTCCATGTGCGCGACCGAGAAATCCACTGGTTCAGTATAGGCAATGCCGT
TCTAATCGCTGGACTGTTACTGGGCCTGCTTGGTTCTATTCTTCTGCGCG
TGGTTCGTAAGGACTTCCGGGAGTACGAAGCTCTAGATTCCGAAGAAGAA
TCAGATGATTATGGATGGAAGTTGTTGTACGCAGACGTGTTTCGCTTCCC
ACCAGGCCTCTCTATCTTGTGCCCATTTCTTGGTTCTGGCGTTCAGTTGC
TGAGTCTGTCGTGTCTATTACTGCTGTTTGGCGCCTTAGAAGTCTTTCAT
CCTCTTTCAAGGGGGGCAATCTACACCACCGCTGTTCTCTTGTATGCAGC
GACTGCGGGTATTGCTGGTTTCGCCAGTGGATATCTGTACAAGCAAATGG
GCGGCAACGCCTGGGTTCGAAATGCTGTGTTAACCGTGTTTGTGTTCTGC
GGACCAACTGCATGTATCTGGGTCTATCTGAATGCAATCGCCCTGTTTTA
CAACTCCACTCGTGCACTTCCTCTATGGACTATCGCGTCCGTTGCAGCAC
TATGGGCTATGGTTACAATTCCTTTAACCATTCTTGGAGCTATCTTTGGA
AAGAATCAGAGTCGCCCCTACGATTCTCTGGGCAGAACGACAAAGATCCC
TCGAGAAATCCCAAAAAGTCCGTGGTATAGACGGCCCCCGTTCTTGGCAC
TGGTTTGTGGTTTAATGCCGTTTAGCTCTATATATGTTGAGCTTTTTTTC
ATGTTTGGTGCCTTGTGGGGCCACAAGATCTTTCAAGTCTATGAGATGCT
GGCTATTGTGTTCATTATTTTGATGCTGGTCACAGTGATCACAACTGCCT
CTGCTATTTATTTTCAGCTCGTGTCTGAAAACCACAAATGGGCCTGGTCA
AGTCTCGCCTATGGTGGGAGCGTTGGTGTATATATTTTCGTTTACAGCGC
CTACTACTACTATGTGCGATCACCTTTGGAGGGGTTTATGCAGGCCAACT
TCTTCTTTGGCTACATGTGGCTTGTTAGTTATGCGTTTTTCTTGATGTGT
GGCACCGTTGGCTTCTTTTCGGCAAGGAAGTTTATTCGCTTCCTGTACAG
TTCGATCAAGAGCGATTAA
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Coding sequence (CDS) from alignment at tig00000228_pilon:63284..65202+

>Gchil2153.t1 ID=Gchil2153.t1|Name=Gchil2153.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1755bp|location=Sequence derived from alignment at tig00000228_pilon:63284..65202+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGTTCCTTCTTATTTCTTCGCGCTTCTTCTGCTCCACTTATGTAT
GTTTCATAATCGTGTCGCTGCTACACGCGGCGAGTCTTATGAACACGGGC
AGTCCATTGATGTGTGGGTCAACAAAATAGCTCCGTATAGTTCTCCAACA
GAGAGCTACGAGTTCTACGAAAAGCTACCTTGGTGTAAACCGGAAAAGCT
TGATCATCGTTCTCTAAAACTCGGCGAAACGCTTGCTGGAGATCATCTTG
TACGCTCTTCGTTCAACATTAACTTTCGAGAATCGATACATGATCAACTC
CTTTGCGAACAGCCGCTTGCCCCGGCACAGGTTAATCAATTTGTGTATGC
CATTCGAAAACGGTTTGTGTATGACATGCTCATTGACAACTTACCGGTAA
AACTCTTTGTCGGGGAGATTTCTGATGACGAAGGCACGACTAAGATACAT
CTTTACACCCATATCAATTTCATCGTTAGTTTCAATGACAAACATATTAT
CGAAGCCTCGGCCACTCCAGAAAAACCAGTCGAACTTTCTTCAGGTCAGC
ATGCTAATATTCGCTTTTCTTACAGTGTCTCATGGCAAGAGACAAAGTTC
CCGGTCGATCGTCGAGCCGATAAATACAGAGACCCATTCCATGTGCGCGA
CCGAGAAATCCACTGGTTCAGTATAGGCAATGCCGTTCTAATCGCTGGAC
TGTTACTGGGCCTGCTTGGTTCTATTCTTCTGCGCGTGGTTCGTAAGGAC
TTCCGGGAGTACGAAGCTCTAGATTCCGAAGAAGAATCAGATGATTATGG
ATGGAAGTTGTTGTACGCAGACGTGTTTCGCTTCCCACCAGGCCTCTCTA
TCTTGTGCCCATTTCTTGGTTCTGGCGTTCAGTTGCTGAGTCTGTCGTGT
CTATTACTGCTGTTTGGCGCCTTAGAAGTCTTTCATCCTCTTTCAAGGGG
GGCAATCTACACCACCGCTGTTCTCTTGTATGCAGCGACTGCGGGTATTG
CTGGTTTCGCCAGTGGATATCTGTACAAGCAAATGGGCGGCAACGCCTGG
GTTCGAAATGCTGTGTTAACCGTGTTTGTGTTCTGCGGACCAACTGCATG
TATCTGGGTCTATCTGAATGCAATCGCCCTGTTTTACAACTCCACTCGTG
CACTTCCTCTATGGACTATCGCGTCCGTTGCAGCACTATGGGCTATGGTT
ACAATTCCTTTAACCATTCTTGGAGCTATCTTTGGAAAGAATCAGAGTCG
CCCCTACGATTCTCTGGGCAGAACGACAAAGATCCCTCGAGAAATCCCAA
AAAGTCCGTGGTATAGACGGCCCCCGTTCTTGGCACTGGTTTGTGGTTTA
ATGCCGTTTAGCTCTATATATGTTGAGCTTTTTTTCATGTTTGGTGCCTT
GTGGGGCCACAAGATCTTTCAAGTCTATGAGATGCTGGCTATTGTGTTCA
TTATTTTGATGCTGGTCACAGTGATCACAACTGCCTCTGCTATTTATTTT
CAGCTCGTGTCTGAAAACCACAAATGGGCCTGGTCAAGTCTCGCCTATGG
TGGGAGCGTTGGTGTATATATTTTCGTTTACAGCGCCTACTACTACTATG
TGCGATCACCTTTGGAGGGGTTTATGCAGGCCAACTTCTTCTTTGGCTAC
ATGTGGCTTGTTAGTTATGCGTTTTTCTTGATGTGTGGCACCGTTGGCTT
CTTTTCGGCAAGGAAGTTTATTCGCTTCCTGTACAGTTCGATCAAGAGCG
ATTAA
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