Gchil2193.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2193.t1
Unique Name	Gchil2193.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:232465..233070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX52972
Preferred name	GUK1
PFAMs	Guanylate_kin
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00649
KEGG ko	ko:K00942,ko:K11151,ko:K15538
KEGG Reaction	R00332,R02090,R03048,R08379,R08380
KEGG Pathway	ko00230,ko00830,ko01100,map00230,map00830,map01100
KEGG Module	M00050
GOs	GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006185,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009151,GO:0009152,GO:0009153,GO:0009161,GO:0009162,GO:0009163,GO:0009165,GO:0009167,GO:0009170,GO:0009179,GO:0009180,GO:0009182,GO:0009183,GO:0009185,GO:0009186,GO:0009188,GO:0009189,GO:0009199,GO:0009200,GO:0009201,GO:0009205,GO:0009206,GO:0009215,GO:0009225,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015031,GO:0015833,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019673,GO:0019692,GO:0019693,GO:0033036,GO:0034404,GO:0034436,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046034,GO:0046037,GO:0046039,GO:0046054,GO:0046060,GO:0046066,GO:0046128,GO:0046129,GO:0046385,GO:0046390,GO:0046483,GO:0046710,GO:0046711,GO:0046939,GO:0046940,GO:0050145,GO:0051179,GO:0051234,GO:0055086,GO:0071702,GO:0071704,GO:0071705,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901264,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue	9.28e-75
EggNOG OGs	COG0194@1\|root,KOG0707@2759\|Eukaryota
EC	2.7.4.8,3.2.1.130
Description	guanylate kinase activity
COG category	F
CAZy	GH99
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2193	Gchil2193	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 232465..233070 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2193.t1.start1	Gchil2193.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 232465..232467 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2193.t1.CDS1	Gchil2193.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 232465..233070 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2193.t1.exon1	Gchil2193.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 232465..233070 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2193.t1.stop1	Gchil2193.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 233068..233070 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2193.t1	Gchil2193.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 232465..233070 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:232465..233070+
coding sequence from alignment at tig00000228_pilon:232465..233070+

mRNA sequence

>Gchil2193.t1 ID=Gchil2193.t1|Name=Gchil2193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=202bp
MVEDKPGPNAVVIAGPSGVGKGTLIARLRADFPALFGFSVSHTSRAPRAG
EKDGVDYHFTTADQIKHDVVAGKFIEHAEVHGRHYGTSVMAVEQVRAQGK
ICILDIDVQGCRSARAAGLNAKYVFVAPPSLAELENRLRGRGTETEDAIV
IRLGNAHTEIDAKDEPGLFDVVLVNDSLDVAYAQLKDVLKEDMEHALTAQ
M*

spliced messenger RNA

>Gchil2193.t1 ID=Gchil2193.t1|Name=Gchil2193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000228_pilon:232465..233070+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAAGATAAGCCCGGTCCCAACGCCGTCGTCATAGCCGGTCCGTC
CGGCGTGGGAAAGGGTACGCTCATTGCGCGTCTTCGCGCCGACTTCCCCG
CGCTCTTCGGCTTTTCCGTGTCACACACATCGCGTGCGCCGCGCGCCGGT
GAGAAAGACGGTGTTGACTACCACTTCACCACCGCCGACCAGATCAAGCA
CGATGTGGTGGCCGGAAAGTTCATCGAGCACGCCGAGGTGCACGGTCGTC
ACTACGGAACTTCCGTCATGGCTGTTGAGCAAGTGCGCGCGCAGGGAAAG
ATCTGCATTCTTGATATTGATGTGCAGGGGTGTCGCTCGGCTCGCGCCGC
GGGGCTCAACGCCAAGTACGTGTTTGTGGCACCGCCTTCACTGGCCGAGC
TGGAGAATAGATTAAGGGGGCGTGGTACTGAAACTGAAGACGCCATTGTC
ATCAGATTGGGTAATGCTCACACCGAGATTGACGCCAAGGACGAGCCGGG
TTTGTTTGATGTTGTTTTGGTCAATGACTCTCTCGATGTCGCTTATGCAC
AGCTTAAAGATGTGCTCAAAGAGGACATGGAACATGCCTTGACCGCCCAA
ATGTAA

protein sequence of Gchil2193.t1

>Gchil2193.t1 ID=Gchil2193.t1|Name=Gchil2193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MVEDKPGPNAVVIAGPSGVGKGTLIARLRADFPALFGFSVSHTSRAPRAG
EKDGVDYHFTTADQIKHDVVAGKFIEHAEVHGRHYGTSVMAVEQVRAQGK
ICILDIDVQGCRSARAAGLNAKYVFVAPPSLAELENRLRGRGTETEDAIV
IRLGNAHTEIDAKDEPGLFDVVLVNDSLDVAYAQLKDVLKEDMEHALTAQ
M*

mRNA from alignment at tig00000228_pilon:232465..233070+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2193.t1 ID=Gchil2193.t1|Name=Gchil2193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000228_pilon:232465..233070+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGAAGATAAGCCCGGTCCCAACGCCGTCGTCATAGCCGGTCCGTC
CGGCGTGGGAAAGGGTACGCTCATTGCGCGTCTTCGCGCCGACTTCCCCG
CGCTCTTCGGCTTTTCCGTGTCACACACATCGCGTGCGCCGCGCGCCGGT
GAGAAAGACGGTGTTGACTACCACTTCACCACCGCCGACCAGATCAAGCA
CGATGTGGTGGCCGGAAAGTTCATCGAGCACGCCGAGGTGCACGGTCGTC
ACTACGGAACTTCCGTCATGGCTGTTGAGCAAGTGCGCGCGCAGGGAAAG
ATCTGCATTCTTGATATTGATGTGCAGGGGTGTCGCTCGGCTCGCGCCGC
GGGGCTCAACGCCAAGTACGTGTTTGTGGCACCGCCTTCACTGGCCGAGC
TGGAGAATAGATTAAGGGGGCGTGGTACTGAAACTGAAGACGCCATTGTC
ATCAGATTGGGTAATGCTCACACCGAGATTGACGCCAAGGACGAGCCGGG
TTTGTTTGATGTTGTTTTGGTCAATGACTCTCTCGATGTCGCTTATGCAC
AGCTTAAAGATGTGCTCAAAGAGGACATGGAACATGCCTTGACCGCCCAA
ATGTAA

Coding sequence (CDS) from alignment at tig00000228_pilon:232465..233070+

>Gchil2193.t1 ID=Gchil2193.t1|Name=Gchil2193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000228_pilon:232465..233070+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGAAGATAAGCCCGGTCCCAACGCCGTCGTCATAGCCGGTCCGTC
CGGCGTGGGAAAGGGTACGCTCATTGCGCGTCTTCGCGCCGACTTCCCCG
CGCTCTTCGGCTTTTCCGTGTCACACACATCGCGTGCGCCGCGCGCCGGT
GAGAAAGACGGTGTTGACTACCACTTCACCACCGCCGACCAGATCAAGCA
CGATGTGGTGGCCGGAAAGTTCATCGAGCACGCCGAGGTGCACGGTCGTC
ACTACGGAACTTCCGTCATGGCTGTTGAGCAAGTGCGCGCGCAGGGAAAG
ATCTGCATTCTTGATATTGATGTGCAGGGGTGTCGCTCGGCTCGCGCCGC
GGGGCTCAACGCCAAGTACGTGTTTGTGGCACCGCCTTCACTGGCCGAGC
TGGAGAATAGATTAAGGGGGCGTGGTACTGAAACTGAAGACGCCATTGTC
ATCAGATTGGGTAATGCTCACACCGAGATTGACGCCAAGGACGAGCCGGG
TTTGTTTGATGTTGTTTTGGTCAATGACTCTCTCGATGTCGCTTATGCAC
AGCTTAAAGATGTGCTCAAAGAGGACATGGAACATGCCTTGACCGCCCAA
ATGTAA