Gchil331.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil331.t1
Unique NameGchil331.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:216646..217569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog290400.Jann_3673
Max annot lvl28211|Alphaproteobacteria
Evalue4.81e-06
EggNOG OGs2DVSI@1|root,33WZN@2|Bacteria,1NK4P@1224|Proteobacteria,2UW3G@28211|Alphaproteobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil331Gchil331Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 216646..217569 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil331.t1.stop1Gchil331.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 216646..216648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil331.t1.CDS1Gchil331.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 216646..217569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil331.t1.exon1Gchil331.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 216646..217569 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil331.t1.start1Gchil331.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 217567..217569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil331.t1Gchil331.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 216646..217569 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil331.t1 ID=Gchil331.t1|Name=Gchil331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=308bp
MNILANGNFGSLALLFASVLLTVQASFFSIDAHVTHGVNDFNNNLVVNFS
SSSLILSQLPPLPEVGVINPSGINASVITSSTPLSSQMASINAFNFQTSL
NFPPGIGPFNVPIAKTPTFNVFSANITDRSPPFLFEESTDPQVLGEPYLS
AAADANITLRDWNKAAGRVSGYCRDGKAKVKVEIQNGLPNGLYTLWEIGA
ISPLTSNETFTVGPFGGIPNVLATDNWGRASLVRELNFCPSDKCQGSLRC
SLYVSFNYHFDHVVFGGAPTLDFAGLAAGHVAANQLAVYFNGRLILQPQN
KFRSFGW*
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spliced messenger RNA

>Gchil331.t1 ID=Gchil331.t1|Name=Gchil331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000212_pilon:216646..217569- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATATTCTGGCAAATGGAAACTTTGGAAGCTTGGCACTGCTCTTTGC
ATCGGTTCTTCTCACTGTTCAAGCATCATTTTTCTCGATAGATGCTCATG
TCACTCACGGTGTGAATGATTTCAACAACAATCTCGTTGTTAACTTTTCT
TCATCCTCACTCATTTTGTCTCAACTTCCCCCCCTCCCTGAAGTCGGAGT
AATAAATCCGTCCGGCATAAATGCCTCAGTGATTACTAGTTCCACGCCAC
TGTCCTCCCAAATGGCATCAATCAACGCCTTCAACTTCCAAACTTCTCTA
AATTTTCCACCGGGAATTGGGCCTTTCAATGTTCCGATTGCCAAAACGCC
GACGTTCAATGTGTTCTCCGCGAATATAACTGATCGTTCTCCACCGTTTC
TGTTTGAAGAATCAACAGACCCTCAAGTTTTAGGCGAGCCCTATCTTTCC
GCAGCTGCAGATGCAAATATAACTCTGCGAGATTGGAATAAGGCGGCAGG
TCGTGTTTCGGGCTACTGTCGTGATGGGAAAGCTAAAGTGAAAGTAGAAA
TCCAAAACGGTTTGCCAAACGGACTGTACACCTTGTGGGAAATTGGTGCC
ATATCGCCTCTGACCTCAAACGAAACGTTCACAGTTGGTCCATTCGGCGG
TATACCCAACGTACTGGCAACTGATAATTGGGGAAGGGCTTCCCTTGTTA
GGGAGTTAAACTTTTGCCCGTCCGATAAGTGTCAAGGATCGCTTCGGTGC
TCACTTTACGTTTCTTTCAATTATCACTTTGACCACGTCGTGTTTGGCGG
AGCTCCCACTCTTGACTTCGCTGGGTTGGCGGCAGGGCATGTTGCGGCAA
ATCAATTGGCCGTGTATTTTAATGGTCGCCTTATTCTTCAGCCTCAGAAC
AAATTCCGTTCTTTCGGATGGTAG
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protein sequence of Gchil331.t1

>Gchil331.t1 ID=Gchil331.t1|Name=Gchil331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=308bp
MNILANGNFGSLALLFASVLLTVQASFFSIDAHVTHGVNDFNNNLVVNFS
SSSLILSQLPPLPEVGVINPSGINASVITSSTPLSSQMASINAFNFQTSL
NFPPGIGPFNVPIAKTPTFNVFSANITDRSPPFLFEESTDPQVLGEPYLS
AAADANITLRDWNKAAGRVSGYCRDGKAKVKVEIQNGLPNGLYTLWEIGA
ISPLTSNETFTVGPFGGIPNVLATDNWGRASLVRELNFCPSDKCQGSLRC
SLYVSFNYHFDHVVFGGAPTLDFAGLAAGHVAANQLAVYFNGRLILQPQN
KFRSFGW*
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mRNA from alignment at tig00000212_pilon:216646..217569-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil331.t1 ID=Gchil331.t1|Name=Gchil331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000212_pilon:216646..217569- (Gracilaria chilensis NLEC103_M9 male)
ATGAATATTCTGGCAAATGGAAACTTTGGAAGCTTGGCACTGCTCTTTGC
ATCGGTTCTTCTCACTGTTCAAGCATCATTTTTCTCGATAGATGCTCATG
TCACTCACGGTGTGAATGATTTCAACAACAATCTCGTTGTTAACTTTTCT
TCATCCTCACTCATTTTGTCTCAACTTCCCCCCCTCCCTGAAGTCGGAGT
AATAAATCCGTCCGGCATAAATGCCTCAGTGATTACTAGTTCCACGCCAC
TGTCCTCCCAAATGGCATCAATCAACGCCTTCAACTTCCAAACTTCTCTA
AATTTTCCACCGGGAATTGGGCCTTTCAATGTTCCGATTGCCAAAACGCC
GACGTTCAATGTGTTCTCCGCGAATATAACTGATCGTTCTCCACCGTTTC
TGTTTGAAGAATCAACAGACCCTCAAGTTTTAGGCGAGCCCTATCTTTCC
GCAGCTGCAGATGCAAATATAACTCTGCGAGATTGGAATAAGGCGGCAGG
TCGTGTTTCGGGCTACTGTCGTGATGGGAAAGCTAAAGTGAAAGTAGAAA
TCCAAAACGGTTTGCCAAACGGACTGTACACCTTGTGGGAAATTGGTGCC
ATATCGCCTCTGACCTCAAACGAAACGTTCACAGTTGGTCCATTCGGCGG
TATACCCAACGTACTGGCAACTGATAATTGGGGAAGGGCTTCCCTTGTTA
GGGAGTTAAACTTTTGCCCGTCCGATAAGTGTCAAGGATCGCTTCGGTGC
TCACTTTACGTTTCTTTCAATTATCACTTTGACCACGTCGTGTTTGGCGG
AGCTCCCACTCTTGACTTCGCTGGGTTGGCGGCAGGGCATGTTGCGGCAA
ATCAATTGGCCGTGTATTTTAATGGTCGCCTTATTCTTCAGCCTCAGAAC
AAATTCCGTTCTTTCGGATGGTAG
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Coding sequence (CDS) from alignment at tig00000212_pilon:216646..217569-

>Gchil331.t1 ID=Gchil331.t1|Name=Gchil331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=924bp|location=Sequence derived from alignment at tig00000212_pilon:216646..217569- (Gracilaria chilensis NLEC103_M9 male)
ATGAATATTCTGGCAAATGGAAACTTTGGAAGCTTGGCACTGCTCTTTGC
ATCGGTTCTTCTCACTGTTCAAGCATCATTTTTCTCGATAGATGCTCATG
TCACTCACGGTGTGAATGATTTCAACAACAATCTCGTTGTTAACTTTTCT
TCATCCTCACTCATTTTGTCTCAACTTCCCCCCCTCCCTGAAGTCGGAGT
AATAAATCCGTCCGGCATAAATGCCTCAGTGATTACTAGTTCCACGCCAC
TGTCCTCCCAAATGGCATCAATCAACGCCTTCAACTTCCAAACTTCTCTA
AATTTTCCACCGGGAATTGGGCCTTTCAATGTTCCGATTGCCAAAACGCC
GACGTTCAATGTGTTCTCCGCGAATATAACTGATCGTTCTCCACCGTTTC
TGTTTGAAGAATCAACAGACCCTCAAGTTTTAGGCGAGCCCTATCTTTCC
GCAGCTGCAGATGCAAATATAACTCTGCGAGATTGGAATAAGGCGGCAGG
TCGTGTTTCGGGCTACTGTCGTGATGGGAAAGCTAAAGTGAAAGTAGAAA
TCCAAAACGGTTTGCCAAACGGACTGTACACCTTGTGGGAAATTGGTGCC
ATATCGCCTCTGACCTCAAACGAAACGTTCACAGTTGGTCCATTCGGCGG
TATACCCAACGTACTGGCAACTGATAATTGGGGAAGGGCTTCCCTTGTTA
GGGAGTTAAACTTTTGCCCGTCCGATAAGTGTCAAGGATCGCTTCGGTGC
TCACTTTACGTTTCTTTCAATTATCACTTTGACCACGTCGTGTTTGGCGG
AGCTCCCACTCTTGACTTCGCTGGGTTGGCGGCAGGGCATGTTGCGGCAA
ATCAATTGGCCGTGTATTTTAATGGTCGCCTTATTCTTCAGCCTCAGAAC
AAATTCCGTTCTTTCGGATGGTAG
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