Gchil377.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil377.t1
Unique NameGchil377.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:668144..668546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709315.1
Preferred nameTIMM13
PFAMszf-Tim10_DDP
Max annot lvl2759|Eukaryota
KEGG koko:K11805,ko:K17781
KEGG TC3.A.8.1
GOsGO:0001650,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
Evalue9.95e-10
EggNOG OGsKOG1733@1|root,KOG1733@2759|Eukaryota
Descriptionprotein import into mitochondrial inner membrane
COG categoryO
BRITEko00000,ko02000,ko03029,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil377Gchil377Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 668144..668546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil377.t1Gchil377.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 668144..668546 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil377.t1.start1Gchil377.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 668144..668146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil377.t1.CDS1Gchil377.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 668144..668397 +
Gchil377.t1.CDS2Gchil377.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 668471..668546 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil377.t1.exon1Gchil377.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 668144..668397 +
Gchil377.t1.exon2Gchil377.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 668471..668546 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil377.t1.intron1Gchil377.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 668398..668470 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil377.t1.stop1Gchil377.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 668544..668546 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil377.t1 ID=Gchil377.t1|Name=Gchil377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=110bp
MASSDPASEFVGVFRGESFLLSSALLLTMSSGDANVSEMMARIEAQVKAQ
MGEVFREQVTEKCFNVCADVSKKQMSSRETACVEKCLFRFIDAMNVVTEA
LANRSNRGF*
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spliced messenger RNA

>Gchil377.t1 ID=Gchil377.t1|Name=Gchil377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=330bp|location=Sequence derived from alignment at tig00000212_pilon:668144..668546+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTTCTGATCCCGCCAGCGAGTTCGTCGGCGTGTTCCGCGGCGA
ATCTTTTCTTTTGAGTTCCGCGTTGCTCCTCACAATGTCGTCTGGAGACG
CAAATGTTTCGGAAATGATGGCCCGTATCGAGGCTCAGGTGAAAGCGCAG
ATGGGGGAAGTGTTTCGGGAGCAGGTGACTGAGAAGTGCTTCAACGTGTG
TGCGGACGTGTCCAAGAAGCAAATGTCGTCTCGCGAAACAGCCTGCGTTG
AGAAATGCCTGTTTAGATTTATCGATGCAATGAATGTCGTCACTGAAGCT
TTGGCAAATCGATCCAATCGGGGCTTTTGA
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protein sequence of Gchil377.t1

>Gchil377.t1 ID=Gchil377.t1|Name=Gchil377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=110bp
MASSDPASEFVGVFRGESFLLSSALLLTMSSGDANVSEMMARIEAQVKAQ
MGEVFREQVTEKCFNVCADVSKKQMSSRETACVEKCLFRFIDAMNVVTEA
LANRSNRGF*
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mRNA from alignment at tig00000212_pilon:668144..668546+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil377.t1 ID=Gchil377.t1|Name=Gchil377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=403bp|location=Sequence derived from alignment at tig00000212_pilon:668144..668546+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCTTCTGATCCCGCCAGCGAGTTCGTCGGCGTGTTCCGCGGCGA
ATCTTTTCTTTTGAGTTCCGCGTTGCTCCTCACAATGTCGTCTGGAGACG
CAAATGTTTCGGAAATGATGGCCCGTATCGAGGCTCAGGTGAAAGCGCAG
ATGGGGGAAGTGTTTCGGGAGCAGGTGACTGAGAAGTGCTTCAACGTGTG
TGCGGACGTGTCCAAGAAGCAAATGTCGTCTCGCGAAACAGCCTGCGTTG
AGAAGTAAGCGTGTCAAGTCAAATGTCTCGAAGCGATAAAGACCACTAAC
AATCTTTCATTATTATGTCTGACTCAGATGCCTGTTTAGATTTATCGATG
CAATGAATGTCGTCACTGAAGCTTTGGCAAATCGATCCAATCGGGGCTTT
TGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:668144..668546+

>Gchil377.t1 ID=Gchil377.t1|Name=Gchil377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=330bp|location=Sequence derived from alignment at tig00000212_pilon:668144..668546+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCTTCTGATCCCGCCAGCGAGTTCGTCGGCGTGTTCCGCGGCGA
ATCTTTTCTTTTGAGTTCCGCGTTGCTCCTCACAATGTCGTCTGGAGACG
CAAATGTTTCGGAAATGATGGCCCGTATCGAGGCTCAGGTGAAAGCGCAG
ATGGGGGAAGTGTTTCGGGAGCAGGTGACTGAGAAGTGCTTCAACGTGTG
TGCGGACGTGTCCAAGAAGCAAATGTCGTCTCGCGAAACAGCCTGCGTTG
AGAAATGCCTGTTTAGATTTATCGATGCAATGAATGTCGTCACTGAAGCT
TTGGCAAATCGATCCAATCGGGGCTTTTGA
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