Gchil7601.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7601.t1
Unique NameGchil7601.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2179249..2180265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FN95
PFAMsIon_trans_2
Max annot lvl2759|Eukaryota
KEGG koko:K05389
KEGG TC1.A.1.7
Evalue7.15e-44
EggNOG OGsKOG1418@1|root,KOG1418@2759|Eukaryota
Descriptionpotassium channel activity
COG categoryU
BRITEko00000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7601Gchil7601Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2179249..2180265 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7601.t1.stop1Gchil7601.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2179249..2179251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7601.t1.CDS1Gchil7601.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2179249..2180265 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7601.t1.exon1Gchil7601.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2179249..2180265 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7601.t1.start1Gchil7601.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2180263..2180265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7601.t1Gchil7601.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2179249..2180265 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7601.t1 ID=Gchil7601.t1|Name=Gchil7601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp
MEGENTPLVVSTSETFLKRIKSRRYDAFNRVSKRFKGGDGNGEAIEDVLR
DMENSERLNGKIYGGAVFAILAHVVIGITMMRWLEGWSFYDAVYFCVVTT
TTVGYGDITPTRNVSKAFVIYYVFASIGIISTMLAYVIGTLIDRQEELLL
QALGGDEESDEEQLETGRQSESVLDKADVHELAVSVFWLVVILSVGVLVF
WRIEKLSLLNATYVTIISASTVGFGDLQPTRNSSKLAMTVWLCFATIWAA
KVVGEVAGTFAKMKQKSATRRLMGATMDMKSLMRMDKDQDRRVDRCEFLA
QMLIRTGKVSDEDVQPLLKRFAQLDRDSSGFITMDEVT*
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spliced messenger RNA

>Gchil7601.t1 ID=Gchil7601.t1|Name=Gchil7601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000007_pilon:2179249..2180265- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGCGAAAACACACCACTGGTGGTGTCCACTTCGGAAACATTCCT
GAAACGCATCAAGTCTCGACGGTATGACGCATTTAATCGAGTTTCCAAGC
GGTTCAAGGGCGGTGACGGAAATGGTGAAGCTATTGAAGATGTGCTTCGC
GATATGGAGAACTCAGAGCGACTGAATGGGAAGATATATGGTGGGGCGGT
GTTTGCGATTTTGGCTCATGTGGTGATTGGGATTACTATGATGAGATGGC
TTGAGGGGTGGTCTTTTTATGATGCGGTGTACTTTTGCGTTGTGACGACG
ACCACGGTTGGATACGGTGACATCACACCGACTCGCAATGTATCAAAGGC
GTTTGTGATCTATTACGTGTTTGCGTCGATTGGGATCATCTCCACGATGT
TGGCGTATGTGATAGGCACGCTGATTGACCGGCAGGAGGAACTACTACTG
CAAGCGCTTGGGGGGGATGAGGAGTCGGACGAAGAGCAGTTGGAGACGGG
GCGGCAAAGTGAAAGTGTGCTGGACAAAGCGGATGTGCACGAGTTGGCTG
TGTCTGTGTTTTGGCTAGTGGTGATTCTGTCGGTGGGGGTGCTAGTATTC
TGGAGGATAGAAAAGCTATCGCTTCTGAATGCAACGTACGTGACGATTAT
ATCGGCGTCCACTGTGGGGTTTGGGGATCTTCAACCGACGCGAAACTCGT
CCAAGCTGGCAATGACGGTATGGCTGTGCTTCGCAACGATCTGGGCGGCC
AAGGTGGTGGGGGAGGTAGCGGGGACGTTTGCGAAGATGAAGCAAAAGTC
GGCGACGCGACGACTGATGGGGGCGACGATGGACATGAAGAGTCTGATGC
GCATGGACAAGGACCAGGACCGTCGCGTGGACAGGTGCGAGTTTCTAGCT
CAGATGCTGATCCGCACGGGCAAGGTGAGCGACGAAGACGTACAGCCACT
GCTAAAGCGCTTCGCGCAGCTGGACCGCGACAGTAGCGGCTTCATCACCA
TGGACGAGGTGACTTGA
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protein sequence of Gchil7601.t1

>Gchil7601.t1 ID=Gchil7601.t1|Name=Gchil7601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MEGENTPLVVSTSETFLKRIKSRRYDAFNRVSKRFKGGDGNGEAIEDVLR
DMENSERLNGKIYGGAVFAILAHVVIGITMMRWLEGWSFYDAVYFCVVTT
TTVGYGDITPTRNVSKAFVIYYVFASIGIISTMLAYVIGTLIDRQEELLL
QALGGDEESDEEQLETGRQSESVLDKADVHELAVSVFWLVVILSVGVLVF
WRIEKLSLLNATYVTIISASTVGFGDLQPTRNSSKLAMTVWLCFATIWAA
KVVGEVAGTFAKMKQKSATRRLMGATMDMKSLMRMDKDQDRRVDRCEFLA
QMLIRTGKVSDEDVQPLLKRFAQLDRDSSGFITMDEVT*
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mRNA from alignment at tig00000007_pilon:2179249..2180265-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7601.t1 ID=Gchil7601.t1|Name=Gchil7601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000007_pilon:2179249..2180265- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGCGAAAACACACCACTGGTGGTGTCCACTTCGGAAACATTCCT
GAAACGCATCAAGTCTCGACGGTATGACGCATTTAATCGAGTTTCCAAGC
GGTTCAAGGGCGGTGACGGAAATGGTGAAGCTATTGAAGATGTGCTTCGC
GATATGGAGAACTCAGAGCGACTGAATGGGAAGATATATGGTGGGGCGGT
GTTTGCGATTTTGGCTCATGTGGTGATTGGGATTACTATGATGAGATGGC
TTGAGGGGTGGTCTTTTTATGATGCGGTGTACTTTTGCGTTGTGACGACG
ACCACGGTTGGATACGGTGACATCACACCGACTCGCAATGTATCAAAGGC
GTTTGTGATCTATTACGTGTTTGCGTCGATTGGGATCATCTCCACGATGT
TGGCGTATGTGATAGGCACGCTGATTGACCGGCAGGAGGAACTACTACTG
CAAGCGCTTGGGGGGGATGAGGAGTCGGACGAAGAGCAGTTGGAGACGGG
GCGGCAAAGTGAAAGTGTGCTGGACAAAGCGGATGTGCACGAGTTGGCTG
TGTCTGTGTTTTGGCTAGTGGTGATTCTGTCGGTGGGGGTGCTAGTATTC
TGGAGGATAGAAAAGCTATCGCTTCTGAATGCAACGTACGTGACGATTAT
ATCGGCGTCCACTGTGGGGTTTGGGGATCTTCAACCGACGCGAAACTCGT
CCAAGCTGGCAATGACGGTATGGCTGTGCTTCGCAACGATCTGGGCGGCC
AAGGTGGTGGGGGAGGTAGCGGGGACGTTTGCGAAGATGAAGCAAAAGTC
GGCGACGCGACGACTGATGGGGGCGACGATGGACATGAAGAGTCTGATGC
GCATGGACAAGGACCAGGACCGTCGCGTGGACAGGTGCGAGTTTCTAGCT
CAGATGCTGATCCGCACGGGCAAGGTGAGCGACGAAGACGTACAGCCACT
GCTAAAGCGCTTCGCGCAGCTGGACCGCGACAGTAGCGGCTTCATCACCA
TGGACGAGGTGACTTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2179249..2180265-

>Gchil7601.t1 ID=Gchil7601.t1|Name=Gchil7601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000007_pilon:2179249..2180265- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGCGAAAACACACCACTGGTGGTGTCCACTTCGGAAACATTCCT
GAAACGCATCAAGTCTCGACGGTATGACGCATTTAATCGAGTTTCCAAGC
GGTTCAAGGGCGGTGACGGAAATGGTGAAGCTATTGAAGATGTGCTTCGC
GATATGGAGAACTCAGAGCGACTGAATGGGAAGATATATGGTGGGGCGGT
GTTTGCGATTTTGGCTCATGTGGTGATTGGGATTACTATGATGAGATGGC
TTGAGGGGTGGTCTTTTTATGATGCGGTGTACTTTTGCGTTGTGACGACG
ACCACGGTTGGATACGGTGACATCACACCGACTCGCAATGTATCAAAGGC
GTTTGTGATCTATTACGTGTTTGCGTCGATTGGGATCATCTCCACGATGT
TGGCGTATGTGATAGGCACGCTGATTGACCGGCAGGAGGAACTACTACTG
CAAGCGCTTGGGGGGGATGAGGAGTCGGACGAAGAGCAGTTGGAGACGGG
GCGGCAAAGTGAAAGTGTGCTGGACAAAGCGGATGTGCACGAGTTGGCTG
TGTCTGTGTTTTGGCTAGTGGTGATTCTGTCGGTGGGGGTGCTAGTATTC
TGGAGGATAGAAAAGCTATCGCTTCTGAATGCAACGTACGTGACGATTAT
ATCGGCGTCCACTGTGGGGTTTGGGGATCTTCAACCGACGCGAAACTCGT
CCAAGCTGGCAATGACGGTATGGCTGTGCTTCGCAACGATCTGGGCGGCC
AAGGTGGTGGGGGAGGTAGCGGGGACGTTTGCGAAGATGAAGCAAAAGTC
GGCGACGCGACGACTGATGGGGGCGACGATGGACATGAAGAGTCTGATGC
GCATGGACAAGGACCAGGACCGTCGCGTGGACAGGTGCGAGTTTCTAGCT
CAGATGCTGATCCGCACGGGCAAGGTGAGCGACGAAGACGTACAGCCACT
GCTAAAGCGCTTCGCGCAGCTGGACCGCGACAGTAGCGGCTTCATCACCA
TGGACGAGGTGACTTGA
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