Gchil370.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil370.t1
Unique NameGchil370.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:645574..646584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708409.1
PFAMsDNase-RNase,VHL
Max annot lvl2759|Eukaryota
KEGG koko:K03871,ko:K08999
KEGG Pathwayko04066,ko04120,ko04212,ko05200,ko05211,map04066,map04120,map04212,map05200,map05211
KEGG ModuleM00383
Evalue1.88e-28
EggNOG OGsCOG1259@1|root,2SAAR@2759|Eukaryota
DescriptionBifunctional nuclease
COG categoryS
BRITEko00000,ko00001,ko00002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil370Gchil370Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 645574..646584 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil370.t1.stop1Gchil370.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 645574..645576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil370.t1.CDS1Gchil370.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 645574..646584 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil370.t1.exon1Gchil370.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 645574..646584 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil370.t1.start1Gchil370.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 646582..646584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil370.t1Gchil370.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 645574..646584 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil370.t1 ID=Gchil370.t1|Name=Gchil370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=337bp
MACANGVAFCAPLVPRVVGLPCVAHTRVLRRLPAAVKRTTGAVRITIVSQ
HASHAPDYSSGFSPESDADYEEVRVFSFGPSRNDSCLLTLSPVCGGKYAF
KMCVTSAQAESIRASFRRNTCCNSRPSTHDLFNKVLRMGALVVVKAAITH
IHDDVFIARVWFNMAEHDDFNVDCRPSDAIALALRSNAPLYLNINLLKQW
NVEIEAIKRDARHGVCEQVSYEEALKTSSSIREEVRHKPEHIRLAILKMR
LDVAVRTERYAEAAALKTLIDDICPIDTLQNELRKAVSEQRFLDAACIHD
RITVWRARLRMWEKGSIDLERWDAGAVEGEDDVDAW*
back to top

spliced messenger RNA

>Gchil370.t1 ID=Gchil370.t1|Name=Gchil370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000212_pilon:645574..646584- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTGCGCGAACGGCGTCGCGTTCTGCGCGCCTCTTGTGCCGCGGGT
GGTGGGCTTGCCCTGCGTCGCGCATACGCGCGTGTTACGCCGTTTACCGG
CCGCCGTGAAACGCACAACCGGCGCCGTGCGCATCACAATCGTGTCACAA
CATGCCTCCCACGCCCCCGACTATTCGTCCGGCTTTTCACCCGAAAGCGA
CGCCGACTACGAGGAAGTGCGCGTGTTCTCGTTCGGGCCGTCACGAAACG
ACAGTTGTTTGTTGACGTTGAGTCCCGTGTGTGGCGGAAAGTATGCATTC
AAAATGTGCGTCACAAGTGCGCAGGCCGAGTCTATTCGTGCAAGCTTTCG
ACGTAACACGTGTTGTAATAGTCGCCCTTCTACGCATGATTTGTTCAACA
AGGTGTTGCGAATGGGCGCGCTTGTGGTGGTCAAGGCGGCCATTACACAC
ATTCATGACGACGTGTTCATTGCTAGAGTGTGGTTCAATATGGCCGAACA
CGACGACTTCAACGTGGATTGCAGACCGTCCGACGCCATTGCGCTGGCGT
TACGCTCCAATGCACCGCTGTATCTCAACATCAACTTGTTGAAGCAGTGG
AACGTGGAGATTGAAGCCATCAAGCGTGACGCGCGCCACGGCGTGTGCGA
ACAGGTAAGTTATGAAGAGGCGCTAAAAACAAGCAGCTCAATTCGAGAGG
AAGTTCGTCATAAACCGGAGCACATCCGACTGGCAATACTCAAGATGAGA
CTGGACGTGGCGGTGCGAACGGAGCGCTACGCGGAAGCGGCCGCGCTCAA
GACGCTCATCGACGACATCTGTCCCATCGACACGCTGCAAAACGAGCTGA
GAAAGGCGGTGTCGGAACAACGATTTTTGGACGCGGCCTGCATACACGAT
CGCATCACCGTATGGAGGGCGAGACTGCGCATGTGGGAGAAAGGCTCCAT
TGATCTTGAGAGGTGGGACGCCGGCGCTGTGGAGGGGGAGGACGACGTCG
ACGCATGGTAG
back to top

protein sequence of Gchil370.t1

>Gchil370.t1 ID=Gchil370.t1|Name=Gchil370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=337bp
MACANGVAFCAPLVPRVVGLPCVAHTRVLRRLPAAVKRTTGAVRITIVSQ
HASHAPDYSSGFSPESDADYEEVRVFSFGPSRNDSCLLTLSPVCGGKYAF
KMCVTSAQAESIRASFRRNTCCNSRPSTHDLFNKVLRMGALVVVKAAITH
IHDDVFIARVWFNMAEHDDFNVDCRPSDAIALALRSNAPLYLNINLLKQW
NVEIEAIKRDARHGVCEQVSYEEALKTSSSIREEVRHKPEHIRLAILKMR
LDVAVRTERYAEAAALKTLIDDICPIDTLQNELRKAVSEQRFLDAACIHD
RITVWRARLRMWEKGSIDLERWDAGAVEGEDDVDAW*
back to top

mRNA from alignment at tig00000212_pilon:645574..646584-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil370.t1 ID=Gchil370.t1|Name=Gchil370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000212_pilon:645574..646584- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTGCGCGAACGGCGTCGCGTTCTGCGCGCCTCTTGTGCCGCGGGT
GGTGGGCTTGCCCTGCGTCGCGCATACGCGCGTGTTACGCCGTTTACCGG
CCGCCGTGAAACGCACAACCGGCGCCGTGCGCATCACAATCGTGTCACAA
CATGCCTCCCACGCCCCCGACTATTCGTCCGGCTTTTCACCCGAAAGCGA
CGCCGACTACGAGGAAGTGCGCGTGTTCTCGTTCGGGCCGTCACGAAACG
ACAGTTGTTTGTTGACGTTGAGTCCCGTGTGTGGCGGAAAGTATGCATTC
AAAATGTGCGTCACAAGTGCGCAGGCCGAGTCTATTCGTGCAAGCTTTCG
ACGTAACACGTGTTGTAATAGTCGCCCTTCTACGCATGATTTGTTCAACA
AGGTGTTGCGAATGGGCGCGCTTGTGGTGGTCAAGGCGGCCATTACACAC
ATTCATGACGACGTGTTCATTGCTAGAGTGTGGTTCAATATGGCCGAACA
CGACGACTTCAACGTGGATTGCAGACCGTCCGACGCCATTGCGCTGGCGT
TACGCTCCAATGCACCGCTGTATCTCAACATCAACTTGTTGAAGCAGTGG
AACGTGGAGATTGAAGCCATCAAGCGTGACGCGCGCCACGGCGTGTGCGA
ACAGGTAAGTTATGAAGAGGCGCTAAAAACAAGCAGCTCAATTCGAGAGG
AAGTTCGTCATAAACCGGAGCACATCCGACTGGCAATACTCAAGATGAGA
CTGGACGTGGCGGTGCGAACGGAGCGCTACGCGGAAGCGGCCGCGCTCAA
GACGCTCATCGACGACATCTGTCCCATCGACACGCTGCAAAACGAGCTGA
GAAAGGCGGTGTCGGAACAACGATTTTTGGACGCGGCCTGCATACACGAT
CGCATCACCGTATGGAGGGCGAGACTGCGCATGTGGGAGAAAGGCTCCAT
TGATCTTGAGAGGTGGGACGCCGGCGCTGTGGAGGGGGAGGACGACGTCG
ACGCATGGTAG
back to top

Coding sequence (CDS) from alignment at tig00000212_pilon:645574..646584-

>Gchil370.t1 ID=Gchil370.t1|Name=Gchil370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000212_pilon:645574..646584- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTGCGCGAACGGCGTCGCGTTCTGCGCGCCTCTTGTGCCGCGGGT
GGTGGGCTTGCCCTGCGTCGCGCATACGCGCGTGTTACGCCGTTTACCGG
CCGCCGTGAAACGCACAACCGGCGCCGTGCGCATCACAATCGTGTCACAA
CATGCCTCCCACGCCCCCGACTATTCGTCCGGCTTTTCACCCGAAAGCGA
CGCCGACTACGAGGAAGTGCGCGTGTTCTCGTTCGGGCCGTCACGAAACG
ACAGTTGTTTGTTGACGTTGAGTCCCGTGTGTGGCGGAAAGTATGCATTC
AAAATGTGCGTCACAAGTGCGCAGGCCGAGTCTATTCGTGCAAGCTTTCG
ACGTAACACGTGTTGTAATAGTCGCCCTTCTACGCATGATTTGTTCAACA
AGGTGTTGCGAATGGGCGCGCTTGTGGTGGTCAAGGCGGCCATTACACAC
ATTCATGACGACGTGTTCATTGCTAGAGTGTGGTTCAATATGGCCGAACA
CGACGACTTCAACGTGGATTGCAGACCGTCCGACGCCATTGCGCTGGCGT
TACGCTCCAATGCACCGCTGTATCTCAACATCAACTTGTTGAAGCAGTGG
AACGTGGAGATTGAAGCCATCAAGCGTGACGCGCGCCACGGCGTGTGCGA
ACAGGTAAGTTATGAAGAGGCGCTAAAAACAAGCAGCTCAATTCGAGAGG
AAGTTCGTCATAAACCGGAGCACATCCGACTGGCAATACTCAAGATGAGA
CTGGACGTGGCGGTGCGAACGGAGCGCTACGCGGAAGCGGCCGCGCTCAA
GACGCTCATCGACGACATCTGTCCCATCGACACGCTGCAAAACGAGCTGA
GAAAGGCGGTGTCGGAACAACGATTTTTGGACGCGGCCTGCATACACGAT
CGCATCACCGTATGGAGGGCGAGACTGCGCATGTGGGAGAAAGGCTCCAT
TGATCTTGAGAGGTGGGACGCCGGCGCTGTGGAGGGGGAGGACGACGTCG
ACGCATGGTAG
back to top