Gchil330.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil330.t1
Unique NameGchil330.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:215266..215826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1446473.JHWH01000020_gene3901
PFAMsAcetyltransf_1,Acetyltransf_7
Max annot lvl28211|Alphaproteobacteria
Evalue9.16e-47
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,1RIAQ@1224|Proteobacteria,2UEAD@28211|Alphaproteobacteria,2PXAS@265|Paracoccus
DescriptionAcetyltransferase (GNAT) family
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil330Gchil330Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 215266..215826 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil330.t1.start1Gchil330.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 215266..215268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil330.t1.CDS1Gchil330.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 215266..215826 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil330.t1.exon1Gchil330.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 215266..215826 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil330.t1.stop1Gchil330.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 215824..215826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil330.t1Gchil330.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 215266..215826 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil330.t1 ID=Gchil330.t1|Name=Gchil330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=187bp
MTHIRPARISDALDLARLINLAGEGMPLVVWAKMTPEGGDIWRTGAERAA
RGVGGFSYLNAAVAEEDGQVIGGMVAYETGQDKVDADTPPMFRPLIELQN
LAPGTLYLNMLAVDTAHRGKGVGHALLDEFATRAGDRGQSIIVASGNHDA
HRLYRSYGFRDVDRRAVVATDGWKTNHTHWILMLKN*
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spliced messenger RNA

>Gchil330.t1 ID=Gchil330.t1|Name=Gchil330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000212_pilon:215266..215826+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCATATCCGACCCGCCCGTATCTCCGACGCGCTGGATCTTGCCCG
TCTGATCAACCTTGCCGGAGAAGGCATGCCCCTTGTGGTCTGGGCCAAGA
TGACCCCAGAAGGCGGCGATATCTGGCGCACCGGCGCCGAACGCGCCGCG
CGGGGCGTCGGTGGTTTCTCCTATCTCAATGCCGCCGTGGCAGAAGAGGA
CGGACAGGTTATCGGCGGCATGGTCGCCTATGAAACCGGGCAAGATAAGG
TTGATGCCGACACGCCGCCCATGTTTCGACCGCTGATCGAGCTGCAGAAC
CTGGCCCCCGGAACCCTGTACCTGAACATGTTGGCCGTCGACACGGCGCA
CCGTGGAAAAGGCGTAGGCCACGCCTTGCTGGACGAGTTTGCGACGCGCG
CTGGGGACCGGGGACAAAGCATCATTGTCGCGAGTGGCAATCACGACGCC
CATCGCCTGTACCGCAGCTACGGTTTCCGCGATGTGGACCGGCGGGCCGT
TGTCGCGACCGACGGGTGGAAAACCAACCACACGCACTGGATCCTGATGC
TGAAGAACTGA
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protein sequence of Gchil330.t1

>Gchil330.t1 ID=Gchil330.t1|Name=Gchil330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=187bp
MTHIRPARISDALDLARLINLAGEGMPLVVWAKMTPEGGDIWRTGAERAA
RGVGGFSYLNAAVAEEDGQVIGGMVAYETGQDKVDADTPPMFRPLIELQN
LAPGTLYLNMLAVDTAHRGKGVGHALLDEFATRAGDRGQSIIVASGNHDA
HRLYRSYGFRDVDRRAVVATDGWKTNHTHWILMLKN*
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mRNA from alignment at tig00000212_pilon:215266..215826+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil330.t1 ID=Gchil330.t1|Name=Gchil330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000212_pilon:215266..215826+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCCATATCCGACCCGCCCGTATCTCCGACGCGCTGGATCTTGCCCG
TCTGATCAACCTTGCCGGAGAAGGCATGCCCCTTGTGGTCTGGGCCAAGA
TGACCCCAGAAGGCGGCGATATCTGGCGCACCGGCGCCGAACGCGCCGCG
CGGGGCGTCGGTGGTTTCTCCTATCTCAATGCCGCCGTGGCAGAAGAGGA
CGGACAGGTTATCGGCGGCATGGTCGCCTATGAAACCGGGCAAGATAAGG
TTGATGCCGACACGCCGCCCATGTTTCGACCGCTGATCGAGCTGCAGAAC
CTGGCCCCCGGAACCCTGTACCTGAACATGTTGGCCGTCGACACGGCGCA
CCGTGGAAAAGGCGTAGGCCACGCCTTGCTGGACGAGTTTGCGACGCGCG
CTGGGGACCGGGGACAAAGCATCATTGTCGCGAGTGGCAATCACGACGCC
CATCGCCTGTACCGCAGCTACGGTTTCCGCGATGTGGACCGGCGGGCCGT
TGTCGCGACCGACGGGTGGAAAACCAACCACACGCACTGGATCCTGATGC
TGAAGAACTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:215266..215826+

>Gchil330.t1 ID=Gchil330.t1|Name=Gchil330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000212_pilon:215266..215826+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCCATATCCGACCCGCCCGTATCTCCGACGCGCTGGATCTTGCCCG
TCTGATCAACCTTGCCGGAGAAGGCATGCCCCTTGTGGTCTGGGCCAAGA
TGACCCCAGAAGGCGGCGATATCTGGCGCACCGGCGCCGAACGCGCCGCG
CGGGGCGTCGGTGGTTTCTCCTATCTCAATGCCGCCGTGGCAGAAGAGGA
CGGACAGGTTATCGGCGGCATGGTCGCCTATGAAACCGGGCAAGATAAGG
TTGATGCCGACACGCCGCCCATGTTTCGACCGCTGATCGAGCTGCAGAAC
CTGGCCCCCGGAACCCTGTACCTGAACATGTTGGCCGTCGACACGGCGCA
CCGTGGAAAAGGCGTAGGCCACGCCTTGCTGGACGAGTTTGCGACGCGCG
CTGGGGACCGGGGACAAAGCATCATTGTCGCGAGTGGCAATCACGACGCC
CATCGCCTGTACCGCAGCTACGGTTTCCGCGATGTGGACCGGCGGGCCGT
TGTCGCGACCGACGGGTGGAAAACCAACCACACGCACTGGATCCTGATGC
TGAAGAACTGA
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