Gchil362.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil362.t1
Unique NameGchil362.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length660
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:620874..623165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708233.1
PFAMsAlpha-amylase,CBM_48
Max annot lvl2759|Eukaryota
KEGG koko:K01214
KEGG ReactionR09995,R11261
KEGG Pathwayko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG ModuleM00565
Evalue4.55e-143
EggNOG OGsCOG0296@1|root,KOG0470@2759|Eukaryota
EC3.2.1.68
Description1,4-alpha-glucan branching enzyme activity
COG categoryG
CAZyCBM48,GH13
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil362Gchil362Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 620874..623165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil362.t1Gchil362.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 620874..623165 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil362.t1.start1Gchil362.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 620874..620876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil362.t1.CDS1Gchil362.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 620874..621713 +
Gchil362.t1.CDS2Gchil362.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 622026..623165 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil362.t1.exon1Gchil362.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 620874..621713 +
Gchil362.t1.exon2Gchil362.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 622026..623165 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil362.t1.intron1Gchil362.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 621714..622025 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil362.t1.stop1Gchil362.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 623163..623165 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil362.t1 ID=Gchil362.t1|Name=Gchil362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp
MNTVAAAAAPEAHLGKPHPLGATATPQGTNFAIYAREPHNATLLLRAPSS
SSSSSSPSCTADAAPLRFELESHNRSGHVWHVEIRPPVVHYSYLWEIGQC
DGTWVSNACLDPYATLLDTPTGVDRFNDRAAEYDPWGLVEDVNHAFDWHD
IPKPNIAWRDLIIYEMHVRGFSRLSQHHQKHNNNNAANTAGSFAAVVQRI
PYLKMLGVNAVELLPVMEFNETEWSKQSPHTGDVLCQYWGYSTVSFFSVM
NRYATQGASPQHAKREFQSMVRELHRAGIERMTKHPSMRDVKLIAEPWDC
GGAYQVGSFPHHGVWAEWNGKFRDCIRRFFRGDSHMKGEFATRLCGSSDL
YGANSKNERAPERAPFHSVNFVCAHDGFSLRDCVSYEKKHNEANGEANAD
GEQHNNSSNCGTEGDEKVSAHVLAMRIRLMGSMTAGVLLALGTPMLRMGD
ELAHTQHGNNNAWCHDSALSYLPSHASNTTTHDTKDTHDTKDTHDTKDTH
DTMMSSAQLRTTAALTTMRRSVDALRRTTFVHAKHISWHGEHGHDINWHD
GDNLLALTLHDQRTPLFMVFNGSEKHKVVRIPDNPHHNQHWLRVLDTQLT
PPHHVALVEAHMMRVPPASMYDLAPRATLLLLCAPASHVLRALHATHTAL
VNSACAVCL*
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spliced messenger RNA

>Gchil362.t1 ID=Gchil362.t1|Name=Gchil362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00000212_pilon:620874..623165+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACCGTCGCTGCCGCCGCCGCGCCCGAAGCGCACCTAGGAAAGCC
GCATCCGTTGGGCGCTACCGCCACGCCGCAGGGCACCAACTTTGCCATCT
ACGCCAGAGAGCCACACAACGCAACACTCCTTTTGCGTGCACcttcttct
tcttcttcttcttcttctccttcttGTACCGCCGACGCCGCCCCGCTGCG
TTTCGAGCTCGAATCGCACAATCGTAGCGGTCACGTGTGGCACGTCGAGA
TCCGTCCGCCTGTTGTGCACTACTCGTATCTATGGGAGATTGGACAGTGT
GACGGTACGTGGGTGTCAAACGCTTGTCTCGATCCGTACGCCACCCTGCT
TGACACCCCCACCGGCGTCGATCGCTTCAACGACCGTGCCGCCGAATACG
ACCCATGGGGCTTGGTGGAGGATGTCAATCACGCGTTTGATTGGCACGAC
ATTCCCAAACCCAACATTGCGTGGCGCGATCTCATCATCTACGAAATGCA
TGTGCGCGGCTTCTCGCGTCTGTCACAGCACCACCAAAAGCACAACAACA
ACAACGCCGCCAACACGGCGGGTAGTTTTGCGGCGGTGGTGCAAAGAATT
CCATACCTCAAGATGCTGGGAGTGAACGCAGTGGAGCTGTTGCCAGTGAT
GGAGTTTAACGAGACGGAGTGGAGCAAACAATCACCGCACACGGGTGACG
TGTTGTGTCAGTATTGGGGCTATTCTACCGTGTCGTTTTTCTCAGTGATG
AACCGATATGCCACGCAGGGCGCGTCGCCGCAACACgccaagcgcgagtt
tcaaagcatggtgcgcgagttgcaccgcgccggcatcgagCGCATGACCA
AACACCCCTCCATGCGTGACGTGAAACTAATCGCCGAACCGTGGGATTGC
GGCGGCGCGTATCAAGTAGGCTCCTTTCCACACCACGGTGTATGGGCCGA
GTGGAACGGAAAGTTTCGAGATTGCATTCGTCGTTTCTTTCGCGGCGATT
CTCACATGAAAGGCGAATTTGCCACCCGATTATGTGGCTCTTCCGACTTG
TATGGAGCGAATAGCAAAAACGAACGAGCGCCGGAACGAGCGCCGTTTCA
TTCGGTGAACTTTGTGTGTGCGCACGATGGATTTTCGTTGCGCGATTGCG
TGTCGTACGAGAAGAAACACAACGAGGCGAATGGAGAGGCGAATGCAGAT
GGAGAGCAACATAACAACTCGAGCAACTGCGGCACGGAGGGCGATGAAAA
AGTGAGTGCGCACGTGCTCGCCATGCGAATACGACTGATGGGAAGCATGA
CGGCTGGCGTGCTGCTCGCGCTCGGCACGCCTATGCTGCGCATGGGCGAC
GAGCTTGCGCACACGCAGCATGGCAACAACAACGCGTGGTGTCACGACTC
GGCTCTGTCGTACCTGCCGAGCCACGCGTCCAACACCACCACGCATGACA
CGAAAGACACGCACGACACGAAAGACACGCACGACACGAAAGACACGCAC
GACACGATGATGAGCAGCGCGCAGCTGCGTACCACAGCAGCGCTCACAAC
CATGCGACGTAGCGTGGACGCGTTGCGGCGCACAACGTTCGTGCACGCCA
AGCACATCTCTTGGCACGGCGAGCACGGCCATGACATCAACTGGCACGAC
GGTGACAATCTACTGGCGCTGACGCTTCACGACCAACGCACGCCGCTGTT
CATGGTGTTCAACGGATCGGAAAAGCACAAGGTGGTACGTATCCCCGACA
ATCCGCATCATAATCAACACTGGTTGCGTGTGCTGGATACTCAATTGACT
CCCCCGCACCACGTCGCGCTTGTGGAAGCTCATATGATGCGCGTGCCTCC
CGCTAGTATGTACGACCTTGCACCGCGTGCAACACTGCTTTTGTTGTGCG
CCCCCGCTTCACACGTGCTGCGTGCACTGCATGCGACGCACACAGCGCTT
GTCAACAGTGCGTGTGCCGTGTGTTTGTGA
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protein sequence of Gchil362.t1

>Gchil362.t1 ID=Gchil362.t1|Name=Gchil362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=660bp
MNTVAAAAAPEAHLGKPHPLGATATPQGTNFAIYAREPHNATLLLRAPSS
SSSSSSPSCTADAAPLRFELESHNRSGHVWHVEIRPPVVHYSYLWEIGQC
DGTWVSNACLDPYATLLDTPTGVDRFNDRAAEYDPWGLVEDVNHAFDWHD
IPKPNIAWRDLIIYEMHVRGFSRLSQHHQKHNNNNAANTAGSFAAVVQRI
PYLKMLGVNAVELLPVMEFNETEWSKQSPHTGDVLCQYWGYSTVSFFSVM
NRYATQGASPQHAKREFQSMVRELHRAGIERMTKHPSMRDVKLIAEPWDC
GGAYQVGSFPHHGVWAEWNGKFRDCIRRFFRGDSHMKGEFATRLCGSSDL
YGANSKNERAPERAPFHSVNFVCAHDGFSLRDCVSYEKKHNEANGEANAD
GEQHNNSSNCGTEGDEKVSAHVLAMRIRLMGSMTAGVLLALGTPMLRMGD
ELAHTQHGNNNAWCHDSALSYLPSHASNTTTHDTKDTHDTKDTHDTKDTH
DTMMSSAQLRTTAALTTMRRSVDALRRTTFVHAKHISWHGEHGHDINWHD
GDNLLALTLHDQRTPLFMVFNGSEKHKVVRIPDNPHHNQHWLRVLDTQLT
PPHHVALVEAHMMRVPPASMYDLAPRATLLLLCAPASHVLRALHATHTAL
VNSACAVCL*
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mRNA from alignment at tig00000212_pilon:620874..623165+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil362.t1 ID=Gchil362.t1|Name=Gchil362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000212_pilon:620874..623165+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACCGTCGCTGCCGCCGCCGCGCCCGAAGCGCACCTAGGAAAGCC
GCATCCGTTGGGCGCTACCGCCACGCCGCAGGGCACCAACTTTGCCATCT
ACGCCAGAGAGCCACACAACGCAACACTCCTTTTGCGTGCACcttcttct
tcttcttcttcttcttctccttcttGTACCGCCGACGCCGCCCCGCTGCG
TTTCGAGCTCGAATCGCACAATCGTAGCGGTCACGTGTGGCACGTCGAGA
TCCGTCCGCCTGTTGTGCACTACTCGTATCTATGGGAGATTGGACAGTGT
GACGGTACGTGGGTGTCAAACGCTTGTCTCGATCCGTACGCCACCCTGCT
TGACACCCCCACCGGCGTCGATCGCTTCAACGACCGTGCCGCCGAATACG
ACCCATGGGGCTTGGTGGAGGATGTCAATCACGCGTTTGATTGGCACGAC
ATTCCCAAACCCAACATTGCGTGGCGCGATCTCATCATCTACGAAATGCA
TGTGCGCGGCTTCTCGCGTCTGTCACAGCACCACCAAAAGCACAACAACA
ACAACGCCGCCAACACGGCGGGTAGTTTTGCGGCGGTGGTGCAAAGAATT
CCATACCTCAAGATGCTGGGAGTGAACGCAGTGGAGCTGTTGCCAGTGAT
GGAGTTTAACGAGACGGAGTGGAGCAAACAATCACCGCACACGGGTGACG
TGTTGTGTCAGTATTGGGGCTATTCTACCGTGTCGTTTTTCTCAGTGATG
AACCGATATGCCACGCAGGGCGCGTCGCCGCAACACgccaagcgcgagtt
tcaaagcatggtgcgcgagttgcaccgcgccggcatcgaggtgattttag
acgtggtgtacaaccacacggccgagatgggcttcgactacgtggggcgc
ggtttctacggcatgaaacagttggcgcccacaacgtactacgtcatgca
acacggaggcacaaagtttgtcaaccactcgggctgtggaaatacgctga
gctgcaataaccccatcgtgcaaaacctgcttgtggacagcattctatac
tgggcgcacgaaatgcgcgtcgatggcttccgcttcgatctggcttccgt
gttgtgtcgcgccccaaacggtgacttgatgacagacccgcccgtggtGC
AGCGCATGACCAAACACCCCTCCATGCGTGACGTGAAACTAATCGCCGAA
CCGTGGGATTGCGGCGGCGCGTATCAAGTAGGCTCCTTTCCACACCACGG
TGTATGGGCCGAGTGGAACGGAAAGTTTCGAGATTGCATTCGTCGTTTCT
TTCGCGGCGATTCTCACATGAAAGGCGAATTTGCCACCCGATTATGTGGC
TCTTCCGACTTGTATGGAGCGAATAGCAAAAACGAACGAGCGCCGGAACG
AGCGCCGTTTCATTCGGTGAACTTTGTGTGTGCGCACGATGGATTTTCGT
TGCGCGATTGCGTGTCGTACGAGAAGAAACACAACGAGGCGAATGGAGAG
GCGAATGCAGATGGAGAGCAACATAACAACTCGAGCAACTGCGGCACGGA
GGGCGATGAAAAAGTGAGTGCGCACGTGCTCGCCATGCGAATACGACTGA
TGGGAAGCATGACGGCTGGCGTGCTGCTCGCGCTCGGCACGCCTATGCTG
CGCATGGGCGACGAGCTTGCGCACACGCAGCATGGCAACAACAACGCGTG
GTGTCACGACTCGGCTCTGTCGTACCTGCCGAGCCACGCGTCCAACACCA
CCACGCATGACACGAAAGACACGCACGACACGAAAGACACGCACGACACG
AAAGACACGCACGACACGATGATGAGCAGCGCGCAGCTGCGTACCACAGC
AGCGCTCACAACCATGCGACGTAGCGTGGACGCGTTGCGGCGCACAACGT
TCGTGCACGCCAAGCACATCTCTTGGCACGGCGAGCACGGCCATGACATC
AACTGGCACGACGGTGACAATCTACTGGCGCTGACGCTTCACGACCAACG
CACGCCGCTGTTCATGGTGTTCAACGGATCGGAAAAGCACAAGGTGGTAC
GTATCCCCGACAATCCGCATCATAATCAACACTGGTTGCGTGTGCTGGAT
ACTCAATTGACTCCCCCGCACCACGTCGCGCTTGTGGAAGCTCATATGAT
GCGCGTGCCTCCCGCTAGTATGTACGACCTTGCACCGCGTGCAACACTGC
TTTTGTTGTGCGCCCCCGCTTCACACGTGCTGCGTGCACTGCATGCGACG
CACACAGCGCTTGTCAACAGTGCGTGTGCCGTGTGTTTGTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:620874..623165+

>Gchil362.t1 ID=Gchil362.t1|Name=Gchil362.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1980bp|location=Sequence derived from alignment at tig00000212_pilon:620874..623165+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACCGTCGCTGCCGCCGCCGCGCCCGAAGCGCACCTAGGAAAGCC
GCATCCGTTGGGCGCTACCGCCACGCCGCAGGGCACCAACTTTGCCATCT
ACGCCAGAGAGCCACACAACGCAACACTCCTTTTGCGTGCACcttcttct
tcttcttcttcttcttctccttcttGTACCGCCGACGCCGCCCCGCTGCG
TTTCGAGCTCGAATCGCACAATCGTAGCGGTCACGTGTGGCACGTCGAGA
TCCGTCCGCCTGTTGTGCACTACTCGTATCTATGGGAGATTGGACAGTGT
GACGGTACGTGGGTGTCAAACGCTTGTCTCGATCCGTACGCCACCCTGCT
TGACACCCCCACCGGCGTCGATCGCTTCAACGACCGTGCCGCCGAATACG
ACCCATGGGGCTTGGTGGAGGATGTCAATCACGCGTTTGATTGGCACGAC
ATTCCCAAACCCAACATTGCGTGGCGCGATCTCATCATCTACGAAATGCA
TGTGCGCGGCTTCTCGCGTCTGTCACAGCACCACCAAAAGCACAACAACA
ACAACGCCGCCAACACGGCGGGTAGTTTTGCGGCGGTGGTGCAAAGAATT
CCATACCTCAAGATGCTGGGAGTGAACGCAGTGGAGCTGTTGCCAGTGAT
GGAGTTTAACGAGACGGAGTGGAGCAAACAATCACCGCACACGGGTGACG
TGTTGTGTCAGTATTGGGGCTATTCTACCGTGTCGTTTTTCTCAGTGATG
AACCGATATGCCACGCAGGGCGCGTCGCCGCAACACgccaagcgcgagtt
tcaaagcatggtgcgcgagttgcaccgcgccggcatcgagCGCATGACCA
AACACCCCTCCATGCGTGACGTGAAACTAATCGCCGAACCGTGGGATTGC
GGCGGCGCGTATCAAGTAGGCTCCTTTCCACACCACGGTGTATGGGCCGA
GTGGAACGGAAAGTTTCGAGATTGCATTCGTCGTTTCTTTCGCGGCGATT
CTCACATGAAAGGCGAATTTGCCACCCGATTATGTGGCTCTTCCGACTTG
TATGGAGCGAATAGCAAAAACGAACGAGCGCCGGAACGAGCGCCGTTTCA
TTCGGTGAACTTTGTGTGTGCGCACGATGGATTTTCGTTGCGCGATTGCG
TGTCGTACGAGAAGAAACACAACGAGGCGAATGGAGAGGCGAATGCAGAT
GGAGAGCAACATAACAACTCGAGCAACTGCGGCACGGAGGGCGATGAAAA
AGTGAGTGCGCACGTGCTCGCCATGCGAATACGACTGATGGGAAGCATGA
CGGCTGGCGTGCTGCTCGCGCTCGGCACGCCTATGCTGCGCATGGGCGAC
GAGCTTGCGCACACGCAGCATGGCAACAACAACGCGTGGTGTCACGACTC
GGCTCTGTCGTACCTGCCGAGCCACGCGTCCAACACCACCACGCATGACA
CGAAAGACACGCACGACACGAAAGACACGCACGACACGAAAGACACGCAC
GACACGATGATGAGCAGCGCGCAGCTGCGTACCACAGCAGCGCTCACAAC
CATGCGACGTAGCGTGGACGCGTTGCGGCGCACAACGTTCGTGCACGCCA
AGCACATCTCTTGGCACGGCGAGCACGGCCATGACATCAACTGGCACGAC
GGTGACAATCTACTGGCGCTGACGCTTCACGACCAACGCACGCCGCTGTT
CATGGTGTTCAACGGATCGGAAAAGCACAAGGTGGTACGTATCCCCGACA
ATCCGCATCATAATCAACACTGGTTGCGTGTGCTGGATACTCAATTGACT
CCCCCGCACCACGTCGCGCTTGTGGAAGCTCATATGATGCGCGTGCCTCC
CGCTAGTATGTACGACCTTGCACCGCGTGCAACACTGCTTTTGTTGTGCG
CCCCCGCTTCACACGTGCTGCGTGCACTGCATGCGACGCACACAGCGCTT
GTCAACAGTGCGTGTGCCGTGTGTTTGTGA
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