Gchil345.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil345.t2
Unique NameGchil345.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:412365..413163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4533.OB01G26360.1
Max annot lvl35493|Streptophyta
Evalue2.9e-35
EggNOG OGs2CMG3@1|root,2QQ97@2759|Eukaryota,37JIU@33090|Viridiplantae,3GHHI@35493|Streptophyta,3KND6@4447|Liliopsida,3I9AN@38820|Poales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil345Gchil345Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 412365..413366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil345.t2Gchil345.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 412365..413163 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil345.t2.start1Gchil345.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 412365..412367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil345.t2.CDS1Gchil345.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 412365..413036 +
Gchil345.t2.CDS2Gchil345.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 413122..413163 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil345.t2.exon1Gchil345.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 412365..413036 +
Gchil345.t2.exon2Gchil345.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 413122..413163 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil345.t2.intron1Gchil345.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 413037..413121 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil345.t2.stop1Gchil345.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 413161..413163 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil345.t2 ID=Gchil345.t2|Name=Gchil345.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=238bp
MSSPSRAPLKLDLHLCRRRLTLFLPFIAILTLLSVISDNRSVPRGFSATC
SSRSEPLHGGDCEALREPRRPTWACTDSMKQALPKFISLYNSRPVRNNTG
GVMFDHAFALWYTLRMEQPKTVIESGAFKGLTTWIIRTTLPTARIISLDP
AEPSRRLKGVEYLTDKYFNDFSSVDWATMGVDPKETLVFLDDHQSSFRRI
FLDNKHSFRRFIAEDNYGYLEGDNHRAGSNTYVLGSI*
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spliced messenger RNA

>Gchil345.t2 ID=Gchil345.t2|Name=Gchil345.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000212_pilon:412365..413163+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTCCATCTCGAGCGCCGCTCAAGCTGGACCTCCATCTCTGTCG
CCGCCGTTTGACGCTTTTTCTGCCGTTCATCGCCATCTTAACACTACTCT
CCGTAATTTCCGATAATCGGTCCGTCCCGCGCGGCTTCTCCGCCACATGC
AGCAGTCGCTCCGAGCCGCTGCATGGCGGCGACTGCGAGGCGTTGCGGGA
ACCTAGACGCCCGACATGGGCGTGCACGGACAGCATGAAACAGGCACTTC
CTAAGTTCATCTCCTTGTACAACTCGCGCCCGGTTCGAAATAACACGGGC
GGTGTTATGTTTGACCATGCGTTTGCGTTATGGTACACGCTGCGAATGGA
ACAGCCCAAGACGGTGATCGAGAGTGGCGCGTTCAAGGGACTGACCACAT
GGATCATACGAACAACTCTGCCTACCGCGCGCATCATCTCACTTGATCCG
GCCGAACCGAGCCGCCGATTGAAGGGTGTGGAATACTTGACAGATAAGTA
CTTCAACGACTTTTCCAGTGTGGATTGGGCTACAATGGGCGTTGACCCTA
AAGAAACGCTCGTGTTTCTGGACGATCATCAAAGCTCATTCCGTCGAATC
TTCCTTGATAACAAGCACTCTTTCCGTCGCTTCATCGCGGAGGACAACTA
TGGATACCTTGAAGGAGACAACCACAGAGCTGGGAGCAACACTTACGTCT
TGGGGAGCATCTGA
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protein sequence of Gchil345.t2

>Gchil345.t2 ID=Gchil345.t2|Name=Gchil345.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=238bp
MSSPSRAPLKLDLHLCRRRLTLFLPFIAILTLLSVISDNRSVPRGFSATC
SSRSEPLHGGDCEALREPRRPTWACTDSMKQALPKFISLYNSRPVRNNTG
GVMFDHAFALWYTLRMEQPKTVIESGAFKGLTTWIIRTTLPTARIISLDP
AEPSRRLKGVEYLTDKYFNDFSSVDWATMGVDPKETLVFLDDHQSSFRRI
FLDNKHSFRRFIAEDNYGYLEGDNHRAGSNTYVLGSI*
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mRNA from alignment at tig00000212_pilon:412365..413163+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil345.t2 ID=Gchil345.t2|Name=Gchil345.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=799bp|location=Sequence derived from alignment at tig00000212_pilon:412365..413163+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTCCATCTCGAGCGCCGCTCAAGCTGGACCTCCATCTCTGTCG
CCGCCGTTTGACGCTTTTTCTGCCGTTCATCGCCATCTTAACACTACTCT
CCGTAATTTCCGATAATCGGTCCGTCCCGCGCGGCTTCTCCGCCACATGC
AGCAGTCGCTCCGAGCCGCTGCATGGCGGCGACTGCGAGGCGTTGCGGGA
ACCTAGACGCCCGACATGGGCGTGCACGGACAGCATGAAACAGGCACTTC
CTAAGTTCATCTCCTTGTACAACTCGCGCCCGGTTCGAAATAACACGGGC
GGTGTTATGTTTGACCATGCGTTTGCGTTATGGTACACGCTGCGAATGGA
ACAGCCCAAGACGGTGATCGAGAGTGGCGCGTTCAAGGGACTGACCACAT
GGATCATACGAACAACTCTGCCTACCGCGCGCATCATCTCACTTGATCCG
GCCGAACCGAGCCGCCGATTGAAGGGTGTGGAATACTTGACAGATAAGTA
CTTCAACGACTTTTCCAGTGTGGATTGGGCTACAATGGGCGTTGACCCTA
AAGAAACGCTCGTGTTTCTGGACGATCATCAAAGCTCATTCCGTCGAATC
TTCCTTGATAACAAGCACTCTTTCCGTCGCTTCATCGCGGAGGACAACTA
TGGATACCTTGAAGGAGACAACGTGAGTCTCAAATGGGTGTGCGAACTGA
CGAGGAAGTCTTTGTGGGCGGGCTCCGTTCGCGATAATTTTGGAAAGAAC
CACACAGCACAGAGCTGGGAGCAACACTTACGTCTTGGGGAGCATCTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:412365..413163+

>Gchil345.t2 ID=Gchil345.t2|Name=Gchil345.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00000212_pilon:412365..413163+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTCCATCTCGAGCGCCGCTCAAGCTGGACCTCCATCTCTGTCG
CCGCCGTTTGACGCTTTTTCTGCCGTTCATCGCCATCTTAACACTACTCT
CCGTAATTTCCGATAATCGGTCCGTCCCGCGCGGCTTCTCCGCCACATGC
AGCAGTCGCTCCGAGCCGCTGCATGGCGGCGACTGCGAGGCGTTGCGGGA
ACCTAGACGCCCGACATGGGCGTGCACGGACAGCATGAAACAGGCACTTC
CTAAGTTCATCTCCTTGTACAACTCGCGCCCGGTTCGAAATAACACGGGC
GGTGTTATGTTTGACCATGCGTTTGCGTTATGGTACACGCTGCGAATGGA
ACAGCCCAAGACGGTGATCGAGAGTGGCGCGTTCAAGGGACTGACCACAT
GGATCATACGAACAACTCTGCCTACCGCGCGCATCATCTCACTTGATCCG
GCCGAACCGAGCCGCCGATTGAAGGGTGTGGAATACTTGACAGATAAGTA
CTTCAACGACTTTTCCAGTGTGGATTGGGCTACAATGGGCGTTGACCCTA
AAGAAACGCTCGTGTTTCTGGACGATCATCAAAGCTCATTCCGTCGAATC
TTCCTTGATAACAAGCACTCTTTCCGTCGCTTCATCGCGGAGGACAACTA
TGGATACCTTGAAGGAGACAACCACAGAGCTGGGAGCAACACTTACGTCT
TGGGGAGCATCTGA
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