Gchil345.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil345.t1
Unique Name	Gchil345.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000212_pilon	contig	tig00000212_pilon:412365..413366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4533.OB01G26360.1
Max annot lvl	35493\|Streptophyta
Evalue	7.16e-55
EggNOG OGs	2CMG3@1\|root,2QQ97@2759\|Eukaryota,37JIU@33090\|Viridiplantae,3GHHI@35493\|Streptophyta,3KND6@4447\|Liliopsida,3I9AN@38820\|Poales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil345	Gchil345	Gracilaria chilensis NLEC103_M9 male	gene	tig00000212_pilon 412365..413366 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil345.t1.start1	Gchil345.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000212_pilon 412365..412367 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil345.t1.CDS1	Gchil345.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000212_pilon 412365..413366 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil345.t1.exon1	Gchil345.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000212_pilon 412365..413366 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil345.t1.stop1	Gchil345.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000212_pilon 413364..413366 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil345.t1	Gchil345.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000212_pilon 412365..413366 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000212_pilon:412365..413366+
coding sequence from alignment at tig00000212_pilon:412365..413366+

mRNA sequence

>Gchil345.t1 ID=Gchil345.t1|Name=Gchil345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=334bp
MSSPSRAPLKLDLHLCRRRLTLFLPFIAILTLLSVISDNRSVPRGFSATC
SSRSEPLHGGDCEALREPRRPTWACTDSMKQALPKFISLYNSRPVRNNTG
GVMFDHAFALWYTLRMEQPKTVIESGAFKGLTTWIIRTTLPTARIISLDP
AEPSRRLKGVEYLTDKYFNDFSSVDWATMGVDPKETLVFLDDHQSSFRRI
FLDNKHSFRRFIAEDNYGYLEGDNVSLKWVCELTRKSLWAGSVRDNFGKN
HTAQSWEQHLRLGEHLKSTLRTYYEFPPVASMELTHQRRYDEKHTTPPIV
KDAAFFEKHLAPFGEREFAAYTHFCFVELMTHS*

spliced messenger RNA

>Gchil345.t1 ID=Gchil345.t1|Name=Gchil345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000212_pilon:412365..413366+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTCCATCTCGAGCGCCGCTCAAGCTGGACCTCCATCTCTGTCG
CCGCCGTTTGACGCTTTTTCTGCCGTTCATCGCCATCTTAACACTACTCT
CCGTAATTTCCGATAATCGGTCCGTCCCGCGCGGCTTCTCCGCCACATGC
AGCAGTCGCTCCGAGCCGCTGCATGGCGGCGACTGCGAGGCGTTGCGGGA
ACCTAGACGCCCGACATGGGCGTGCACGGACAGCATGAAACAGGCACTTC
CTAAGTTCATCTCCTTGTACAACTCGCGCCCGGTTCGAAATAACACGGGC
GGTGTTATGTTTGACCATGCGTTTGCGTTATGGTACACGCTGCGAATGGA
ACAGCCCAAGACGGTGATCGAGAGTGGCGCGTTCAAGGGACTGACCACAT
GGATCATACGAACAACTCTGCCTACCGCGCGCATCATCTCACTTGATCCG
GCCGAACCGAGCCGCCGATTGAAGGGTGTGGAATACTTGACAGATAAGTA
CTTCAACGACTTTTCCAGTGTGGATTGGGCTACAATGGGCGTTGACCCTA
AAGAAACGCTCGTGTTTCTGGACGATCATCAAAGCTCATTCCGTCGAATC
TTCCTTGATAACAAGCACTCTTTCCGTCGCTTCATCGCGGAGGACAACTA
TGGATACCTTGAAGGAGACAACGTGAGTCTCAAATGGGTGTGCGAACTGA
CGAGGAAGTCTTTGTGGGCGGGCTCCGTTCGCGATAATTTTGGAAAGAAC
CACACAGCACAGAGCTGGGAGCAACACTTACGTCTTGGGGAGCATCTGAA
ATCCACGCTTCGTACATACTACGAATTCCCGCCGGTGGCATCCATGGAGC
TAACGCATCAACGTCGATACGATGAGAAGCACACCACGCCTCCGATCGTG
AAGGATGCCGCGTTCTTTGAAAAACATCTTGCACCGTTTGGAGAACGTGA
GTTCGCCGCGTACACGCACTTCTGTTTCGTGGAGCTGATGACACACAGTT
GA

protein sequence of Gchil345.t1

>Gchil345.t1 ID=Gchil345.t1|Name=Gchil345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=334bp
MSSPSRAPLKLDLHLCRRRLTLFLPFIAILTLLSVISDNRSVPRGFSATC
SSRSEPLHGGDCEALREPRRPTWACTDSMKQALPKFISLYNSRPVRNNTG
GVMFDHAFALWYTLRMEQPKTVIESGAFKGLTTWIIRTTLPTARIISLDP
AEPSRRLKGVEYLTDKYFNDFSSVDWATMGVDPKETLVFLDDHQSSFRRI
FLDNKHSFRRFIAEDNYGYLEGDNVSLKWVCELTRKSLWAGSVRDNFGKN
HTAQSWEQHLRLGEHLKSTLRTYYEFPPVASMELTHQRRYDEKHTTPPIV
KDAAFFEKHLAPFGEREFAAYTHFCFVELMTHS*

mRNA from alignment at tig00000212_pilon:412365..413366+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil345.t1 ID=Gchil345.t1|Name=Gchil345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000212_pilon:412365..413366+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTCCATCTCGAGCGCCGCTCAAGCTGGACCTCCATCTCTGTCG
CCGCCGTTTGACGCTTTTTCTGCCGTTCATCGCCATCTTAACACTACTCT
CCGTAATTTCCGATAATCGGTCCGTCCCGCGCGGCTTCTCCGCCACATGC
AGCAGTCGCTCCGAGCCGCTGCATGGCGGCGACTGCGAGGCGTTGCGGGA
ACCTAGACGCCCGACATGGGCGTGCACGGACAGCATGAAACAGGCACTTC
CTAAGTTCATCTCCTTGTACAACTCGCGCCCGGTTCGAAATAACACGGGC
GGTGTTATGTTTGACCATGCGTTTGCGTTATGGTACACGCTGCGAATGGA
ACAGCCCAAGACGGTGATCGAGAGTGGCGCGTTCAAGGGACTGACCACAT
GGATCATACGAACAACTCTGCCTACCGCGCGCATCATCTCACTTGATCCG
GCCGAACCGAGCCGCCGATTGAAGGGTGTGGAATACTTGACAGATAAGTA
CTTCAACGACTTTTCCAGTGTGGATTGGGCTACAATGGGCGTTGACCCTA
AAGAAACGCTCGTGTTTCTGGACGATCATCAAAGCTCATTCCGTCGAATC
TTCCTTGATAACAAGCACTCTTTCCGTCGCTTCATCGCGGAGGACAACTA
TGGATACCTTGAAGGAGACAACGTGAGTCTCAAATGGGTGTGCGAACTGA
CGAGGAAGTCTTTGTGGGCGGGCTCCGTTCGCGATAATTTTGGAAAGAAC
CACACAGCACAGAGCTGGGAGCAACACTTACGTCTTGGGGAGCATCTGAA
ATCCACGCTTCGTACATACTACGAATTCCCGCCGGTGGCATCCATGGAGC
TAACGCATCAACGTCGATACGATGAGAAGCACACCACGCCTCCGATCGTG
AAGGATGCCGCGTTCTTTGAAAAACATCTTGCACCGTTTGGAGAACGTGA
GTTCGCCGCGTACACGCACTTCTGTTTCGTGGAGCTGATGACACACAGTT
GA

Coding sequence (CDS) from alignment at tig00000212_pilon:412365..413366+

>Gchil345.t1 ID=Gchil345.t1|Name=Gchil345.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000212_pilon:412365..413366+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTCCATCTCGAGCGCCGCTCAAGCTGGACCTCCATCTCTGTCG
CCGCCGTTTGACGCTTTTTCTGCCGTTCATCGCCATCTTAACACTACTCT
CCGTAATTTCCGATAATCGGTCCGTCCCGCGCGGCTTCTCCGCCACATGC
AGCAGTCGCTCCGAGCCGCTGCATGGCGGCGACTGCGAGGCGTTGCGGGA
ACCTAGACGCCCGACATGGGCGTGCACGGACAGCATGAAACAGGCACTTC
CTAAGTTCATCTCCTTGTACAACTCGCGCCCGGTTCGAAATAACACGGGC
GGTGTTATGTTTGACCATGCGTTTGCGTTATGGTACACGCTGCGAATGGA
ACAGCCCAAGACGGTGATCGAGAGTGGCGCGTTCAAGGGACTGACCACAT
GGATCATACGAACAACTCTGCCTACCGCGCGCATCATCTCACTTGATCCG
GCCGAACCGAGCCGCCGATTGAAGGGTGTGGAATACTTGACAGATAAGTA
CTTCAACGACTTTTCCAGTGTGGATTGGGCTACAATGGGCGTTGACCCTA
AAGAAACGCTCGTGTTTCTGGACGATCATCAAAGCTCATTCCGTCGAATC
TTCCTTGATAACAAGCACTCTTTCCGTCGCTTCATCGCGGAGGACAACTA
TGGATACCTTGAAGGAGACAACGTGAGTCTCAAATGGGTGTGCGAACTGA
CGAGGAAGTCTTTGTGGGCGGGCTCCGTTCGCGATAATTTTGGAAAGAAC
CACACAGCACAGAGCTGGGAGCAACACTTACGTCTTGGGGAGCATCTGAA
ATCCACGCTTCGTACATACTACGAATTCCCGCCGGTGGCATCCATGGAGC
TAACGCATCAACGTCGATACGATGAGAAGCACACCACGCCTCCGATCGTG
AAGGATGCCGCGTTCTTTGAAAAACATCTTGCACCGTTTGGAGAACGTGA
GTTCGCCGCGTACACGCACTTCTGTTTCGTGGAGCTGATGACACACAGTT
GA