Gchil6357.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6357.t1
Unique NameGchil6357.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length312
Homology
BLAST of Gchil6357.t1 vs. uniprot
Match: A0A2V3J1S2_9FLOR (Ribonuclease H2 subunit B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1S2_9FLOR)

HSP 1 Score: 237 bits (605), Expect = 1.810e-73
Identity = 121/252 (48.02%), Postives = 167/252 (66.27%), Query Frame = 0
Query:    9 MAPARQKSGLVVLPKDLTTCSPADAFSPSISIERINLPVNEDDNVVPLYIASDDKKVPMLVELVQFTHTHGSWISVPQDSALVPQFCSNGNLTFVTRVDPLFAILIVMDYNSKSTMTEVFQPLDALCTTGDGINLSSFSSEQQVSVICDSKMAGGESFHRLNKEKTVSWILHKHHLLSQHPQVDGQHAADILCQYLIERWVTIFQNARSLQKP-ARQMISATESPAEMAMTVMMNCAESNNIAASIPQSNEK 259
            MA +R +S +V LPK L            + IE I L  NE+  ++PL+ A D +   M+VELV+F H +GSW+ VP+D A  P   SNGN+TFVTRVDPLFA+L++ D N     T VFQPLD+LC   +GINLS+    QQVS +CD+K+   ++F+RL+ EKT+SW+L KH +LS+H +++ QHAADI+CQYL  RW TIF+ A     P         ES AE+AM++MM+ A++NN+A S+PQ+N K
Sbjct:    1 MAASRSRSAIVALPKLLLQGDKGKNTLTKVFIEPIKLLGNEEHRLIPLHFARDSRNSLMVVELVKFAHPYGSWMIVPEDLAQPPYLSSNGNITFVTRVDPLFAVLVIADCNGTVGKTRVFQPLDSLCIANNGINLSAVCPAQQVSHLCDTKVVSDQTFYRLSDEKTLSWLLKKHSILSKHSRLNNQHAADIICQYLNHRWNTIFRRALKTSGPDGSPSPQKKESAAELAMSIMMDNAKANNLAESLPQNNMK 252          
BLAST of Gchil6357.t1 vs. uniprot
Match: R7QL60_CHOCR (RNase_H2-Ydr279 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL60_CHOCR)

HSP 1 Score: 155 bits (391), Expect = 6.840e-41
Identity = 91/258 (35.27%), Postives = 136/258 (52.71%), Query Frame = 0
Query:   13 RQKSGLVVLPKDLTTCSPAD--AFSPSISIERINLPVN-EDDNVVPLYIASDDKKVPMLVELVQFTHTHGSWISVPQDSALVPQFCSNGNLTFVTRVDPLFAILIVMDYNSKSTMTEVFQPLDALCTTGDGINLSSFSSEQQVSVICDSKMAGGESFHRLNKEKTVSWILHKHHLLSQHPQVDGQHAADILCQYLIERWVTIFQNARSLQKPARQMISATESPAE--------MAMTVMMNCAESNNIAASIPQSNEK 259
            ++++ +V+LP +              ++++  I  P N +  +VVPLYI   ++K  +LVELV+F     SW  VP+   LVP  CSNG++T VTRVDPLF  L++MD   +    +VFQPLDALC T DG NL+     +Q  ++CD K AGGESF++LN EK +SW+  KH  L +  ++    A  I+ QY+   W       + L+K     +   +S A         +A+  MM  A   N A    + + K
Sbjct:   60 QKRAAVVILPTEALPQGELQKPGVEQTLALTPIEFPENAKASSVVPLYILRKEEKTVVLVELVRFKSPFASWFFVPEAEELVPDVCSNGDVTMVTRVDPLFCALVLMDSLREVGDKQVFQPLDALCVTADGTNLTGLCDTRQFEMLCDVKEAGGESFYKLNDEKAMSWLQAKHGALVRESKMKSADAVGIISQYVTAHW------GKQLRKQLLAEVENVDSEAHKAAKNSHSLALATMMEDAVETNQAILAEERDRK 311          
The following BLAST results are available for this feature:
BLAST of Gchil6357.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1S2_9FLOR1.810e-7348.02Ribonuclease H2 subunit B n=1 Tax=Gracilariopsis c... [more]
R7QL60_CHOCR6.840e-4135.27RNase_H2-Ydr279 domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.120coord: 106..215
e-value: 8.4E-13
score: 50.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..311
IPR019024Ribonuclease H2 subunit B, wHTH domainPFAMPF09468RNase_H2-Ydr279coord: 148..188
e-value: 2.8E-6
score: 27.7
IPR040456Ribonuclease H2 subunit BPANTHERPTHR13383RIBONUCLEASE H2 SUBUNIT Bcoord: 56..282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:247911..248846 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6357.t1Gchil6357.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000196_pilon 247911..248846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6357.t1 ID=Gchil6357.t1|Name=Gchil6357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MHADPVEAMAPARQKSGLVVLPKDLTTCSPADAFSPSISIERINLPVNED
DNVVPLYIASDDKKVPMLVELVQFTHTHGSWISVPQDSALVPQFCSNGNL
TFVTRVDPLFAILIVMDYNSKSTMTEVFQPLDALCTTGDGINLSSFSSEQ
QVSVICDSKMAGGESFHRLNKEKTVSWILHKHHLLSQHPQVDGQHAADIL
CQYLIERWVTIFQNARSLQKPARQMISATESPAEMAMTVMMNCAESNNIA
ASIPQSNEKRKSSQARNTTPSKKKKTVVNKRAAKWWASKRTPSNSIAVSP
RKKTFRPSTTK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019024RNase_H2_suB_wHTH
IPR040456RNase_H2_suB