Gchil6357.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6357.t1
Unique NameGchil6357.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:247911..248846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_076_00017.1
PFAMsRNase_H2-Ydr279
Max annot lvl35493|Streptophyta
KEGG koko:K10744
KEGG Pathwayko03030,map03030
Evalue5.4e-07
EggNOG OGsKOG4705@1|root,KOG4705@2759|Eukaryota,37SKJ@33090|Viridiplantae,3GBX3@35493|Streptophyta
DescriptionRibonuclease H2, subunit
COG categoryS
BRITEko00000,ko00001,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6357Gchil6357Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 247911..248846 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6357.t1.stop1Gchil6357.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 247911..247913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6357.t1.CDS1Gchil6357.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 247911..248846 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6357.t1.exon1Gchil6357.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 247911..248846 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6357.t1.start1Gchil6357.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 248844..248846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6357.t1Gchil6357.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 247911..248846 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6357.t1 ID=Gchil6357.t1|Name=Gchil6357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp
MHADPVEAMAPARQKSGLVVLPKDLTTCSPADAFSPSISIERINLPVNED
DNVVPLYIASDDKKVPMLVELVQFTHTHGSWISVPQDSALVPQFCSNGNL
TFVTRVDPLFAILIVMDYNSKSTMTEVFQPLDALCTTGDGINLSSFSSEQ
QVSVICDSKMAGGESFHRLNKEKTVSWILHKHHLLSQHPQVDGQHAADIL
CQYLIERWVTIFQNARSLQKPARQMISATESPAEMAMTVMMNCAESNNIA
ASIPQSNEKRKSSQARNTTPSKKKKTVVNKRAAKWWASKRTPSNSIAVSP
RKKTFRPSTTK*
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spliced messenger RNA

>Gchil6357.t1 ID=Gchil6357.t1|Name=Gchil6357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000196_pilon:247911..248846- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCCGACCCCGTCGAGGCCATGGCACCTGCACGTCAGAAGTCGGG
ATTGGTTGTTCTCCCTAAAGATCTGACGACCTGCTCACCAGCAGATGCTT
TCTCTCCGTCCATCTCTATTGAACGAATCAATTTGCCAGTGAATGAAGAC
GATAACGTTGTCCCACTCTATATCGCTAGTGACGATAAGAAGGTTCCGAT
GCTCGTGGAACTCGTCCAATTTACTCACACACATGGATCTTGGATATCTG
TTCCACAAGATTCTGCATTAGTACCACAGTTCTGCAGTAACGGAAATCTG
ACTTTCGTTACCAGAGTGGATCCTCTATTCGCAATTCTCATCGTTATGGA
CTATAACAGCAAATCTACCATGACTGAAGTCTTTCAACCATTGGATGCCC
TTTGCACCACAGGAGATGGAATAAACTTGAGCAGTTTCAGTTCTGAACAG
CAAGTATCCGTTATATGTGATTCCAAGATGGCGGGAGGAGAGTCTTTCCA
CCGATTAAACAAGGAGAAAACTGTGTCATGGATACTGCACAAACATCACT
TACTTTCTCAGCATCCTCAAGTGGACGGCCAACATGCCGCGGATATTTTA
TGTCAGTATCTCATTGAAAGGTGGGTCACCATTTTCCAAAACGCTAGAAG
TCTTCAAAAACCTGCCAGACAAATGATTTCTGCAACCGAGTCCCCCGCTG
AAATGGCTATGACCGTCATGATGAACTGTGCCGAAAGTAACAACATTGCG
GCCTCCATACCGCAGTCCAATGAGAAGCGAAAGTCCTCGCAAGCCAGGAA
TACGACGCCTTCGAAGAAAAAGAAAACCGTAGTAAACAAAAGGGCTGCGA
AATGGTGGGCTTCGAAACGAACGCCTTCCAACTCTATAGCAGTGTCTCCA
CGAAAAAAAACCTTTCGACCATCCACTACAAAATGA
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protein sequence of Gchil6357.t1

>Gchil6357.t1 ID=Gchil6357.t1|Name=Gchil6357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MHADPVEAMAPARQKSGLVVLPKDLTTCSPADAFSPSISIERINLPVNED
DNVVPLYIASDDKKVPMLVELVQFTHTHGSWISVPQDSALVPQFCSNGNL
TFVTRVDPLFAILIVMDYNSKSTMTEVFQPLDALCTTGDGINLSSFSSEQ
QVSVICDSKMAGGESFHRLNKEKTVSWILHKHHLLSQHPQVDGQHAADIL
CQYLIERWVTIFQNARSLQKPARQMISATESPAEMAMTVMMNCAESNNIA
ASIPQSNEKRKSSQARNTTPSKKKKTVVNKRAAKWWASKRTPSNSIAVSP
RKKTFRPSTTK*
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mRNA from alignment at tig00000196_pilon:247911..248846-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6357.t1 ID=Gchil6357.t1|Name=Gchil6357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000196_pilon:247911..248846- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCGACCCCGTCGAGGCCATGGCACCTGCACGTCAGAAGTCGGG
ATTGGTTGTTCTCCCTAAAGATCTGACGACCTGCTCACCAGCAGATGCTT
TCTCTCCGTCCATCTCTATTGAACGAATCAATTTGCCAGTGAATGAAGAC
GATAACGTTGTCCCACTCTATATCGCTAGTGACGATAAGAAGGTTCCGAT
GCTCGTGGAACTCGTCCAATTTACTCACACACATGGATCTTGGATATCTG
TTCCACAAGATTCTGCATTAGTACCACAGTTCTGCAGTAACGGAAATCTG
ACTTTCGTTACCAGAGTGGATCCTCTATTCGCAATTCTCATCGTTATGGA
CTATAACAGCAAATCTACCATGACTGAAGTCTTTCAACCATTGGATGCCC
TTTGCACCACAGGAGATGGAATAAACTTGAGCAGTTTCAGTTCTGAACAG
CAAGTATCCGTTATATGTGATTCCAAGATGGCGGGAGGAGAGTCTTTCCA
CCGATTAAACAAGGAGAAAACTGTGTCATGGATACTGCACAAACATCACT
TACTTTCTCAGCATCCTCAAGTGGACGGCCAACATGCCGCGGATATTTTA
TGTCAGTATCTCATTGAAAGGTGGGTCACCATTTTCCAAAACGCTAGAAG
TCTTCAAAAACCTGCCAGACAAATGATTTCTGCAACCGAGTCCCCCGCTG
AAATGGCTATGACCGTCATGATGAACTGTGCCGAAAGTAACAACATTGCG
GCCTCCATACCGCAGTCCAATGAGAAGCGAAAGTCCTCGCAAGCCAGGAA
TACGACGCCTTCGAAGAAAAAGAAAACCGTAGTAAACAAAAGGGCTGCGA
AATGGTGGGCTTCGAAACGAACGCCTTCCAACTCTATAGCAGTGTCTCCA
CGAAAAAAAACCTTTCGACCATCCACTACAAAATGA
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Coding sequence (CDS) from alignment at tig00000196_pilon:247911..248846-

>Gchil6357.t1 ID=Gchil6357.t1|Name=Gchil6357.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000196_pilon:247911..248846- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCGACCCCGTCGAGGCCATGGCACCTGCACGTCAGAAGTCGGG
ATTGGTTGTTCTCCCTAAAGATCTGACGACCTGCTCACCAGCAGATGCTT
TCTCTCCGTCCATCTCTATTGAACGAATCAATTTGCCAGTGAATGAAGAC
GATAACGTTGTCCCACTCTATATCGCTAGTGACGATAAGAAGGTTCCGAT
GCTCGTGGAACTCGTCCAATTTACTCACACACATGGATCTTGGATATCTG
TTCCACAAGATTCTGCATTAGTACCACAGTTCTGCAGTAACGGAAATCTG
ACTTTCGTTACCAGAGTGGATCCTCTATTCGCAATTCTCATCGTTATGGA
CTATAACAGCAAATCTACCATGACTGAAGTCTTTCAACCATTGGATGCCC
TTTGCACCACAGGAGATGGAATAAACTTGAGCAGTTTCAGTTCTGAACAG
CAAGTATCCGTTATATGTGATTCCAAGATGGCGGGAGGAGAGTCTTTCCA
CCGATTAAACAAGGAGAAAACTGTGTCATGGATACTGCACAAACATCACT
TACTTTCTCAGCATCCTCAAGTGGACGGCCAACATGCCGCGGATATTTTA
TGTCAGTATCTCATTGAAAGGTGGGTCACCATTTTCCAAAACGCTAGAAG
TCTTCAAAAACCTGCCAGACAAATGATTTCTGCAACCGAGTCCCCCGCTG
AAATGGCTATGACCGTCATGATGAACTGTGCCGAAAGTAACAACATTGCG
GCCTCCATACCGCAGTCCAATGAGAAGCGAAAGTCCTCGCAAGCCAGGAA
TACGACGCCTTCGAAGAAAAAGAAAACCGTAGTAAACAAAAGGGCTGCGA
AATGGTGGGCTTCGAAACGAACGCCTTCCAACTCTATAGCAGTGTCTCCA
CGAAAAAAAACCTTTCGACCATCCACTACAAAATGA
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