Gchil6398.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6398.t1
Unique Name	Gchil6398.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	449

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000196_pilon	contig	tig00000196_pilon:656969..658315 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706240.1
Preferred name	USP46
PFAMs	UCH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11842,ko:K11872
GOs	GO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
Evalue	4.93e-156
EggNOG OGs	KOG1864@1\|root,KOG1864@2759\|Eukaryota
EC	3.4.19.12
Description	ubiquitinyl hydrolase activity
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6398	Gchil6398	Gracilaria chilensis NLEC103_M9 male	gene	tig00000196_pilon 656969..658315 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6398.t1.stop1	Gchil6398.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000196_pilon 656969..656971 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6398.t1.CDS1	Gchil6398.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000196_pilon 656969..658315 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6398.t1.exon1	Gchil6398.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000196_pilon 656969..658315 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6398.t1.start1	Gchil6398.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000196_pilon 658313..658315 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6398.t1	Gchil6398.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000196_pilon 656969..658315 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000196_pilon:656969..658315-
coding sequence from alignment at tig00000196_pilon:656969..658315-

mRNA sequence

>Gchil6398.t1 ID=Gchil6398.t1|Name=Gchil6398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=449bp
MGSAISTGNKLEKALHADLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLDYTNNRRIAKPQPIDSRVNSSLFSTAPSLLPKTANSTPLGNSVSN
VARTTESASPSEYGPSTNANFLDSSENEAEETMLTALGDLFMQIATQKKR
TGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLHKENSAK
RQREQNGISKDSYSNYLTNVNGKLQNGTAITPHHDTVSEERGNPKTFVHE
LFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTEL
LEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKKL
NYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIKS
HRQWLMFDDDAVEPKDEGEIQSVYGVTQESAQSTEAGYILFYEQANAS*

spliced messenger RNA

>Gchil6398.t1 ID=Gchil6398.t1|Name=Gchil6398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000196_pilon:656969..658315- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCCGCCATCTCCACGGGCAATAAGCTGGAGAAAGCTCTGCATGC
CGACCTCCCTGAGGATGAACGATACTTTGGCCTAGAGAACTTTGGTAATA
CCTGTTATTGTAACTCCGTGCTGCAGGCGCTGTACTTTTGCGAACCGTTT
CGGAAGGCGGTTTTGGATTACACCAACAACCGAAGAATCGCCAAGCCGCA
ACCGATTGACTCCAGAGTCAACTCCAGTTTGTTCTCCACCGCCCCGTCGT
TGCTGCCCAAGACAGCCAATTCCACACCCCTTGGGAACTCCGTTTCTAAC
GTCGCGCGAACAACAGAATCCGCCTCGCCGAGTGAATATGGCCCCTCTAC
CAACGCCAACTTTCTTGACTCGAGCGAGAATGAGGCTGAGGAAACAATGC
TTACTGCTCTTGGCGATTTGTTTATGCAGATTGCCACGCAAAAGAAGCGC
ACTGGCTCAGTCCCTCCAAAGACGTTTGTGAACAAGCTGCGCCAGGAAAA
TGAGCTCTTCTCGAGTTACATGCATCAGGATGCTCATGAGTTTCTCAACT
TTATTCTGAATGAGGTTGTCGAGTGTCTGCACAAGGAAAACTCTGCGAAG
CGTCAACGCGAGCAGAATGGTATTTCAAAAGACTCATACTCGAATTACCT
CACAAACGTCAACGGAAAGCTGCAAAACGGCACAGCCATTACACCCCATC
ACGACACGGTTTCCGAAGAGAGGGGAAATCCGAAGACATTTGTGCATGAG
TTGTTTGAAGGTCATCTATCTAATGAGGTACGATGTCTGTGTTGCGAAAC
TGTGACGCAGAGAGTGGAGTCATTCTTTGACTTGAGCGTCGATGTGGAAC
AAAACTCATCGCTCACGTCATGTCTTCGAAACTTCTCCTCCACCGAGCTG
CTTGAAAAGCAGGACAAGTTTTTCTGTGACGCATGTTGTTCACTTCAGGA
AGCGGAGCGACGTATGAGAATCAAGCAGTTGCCGAAGATTCTTGCATTGC
ATCTGAAACGTTTCAAGTATGTCGAGCCGTTAGGCAAATATAAGAAGCTC
AACTATCGTGTCGTATTTCCGCTCGAGCTGCGTCTTTGTAACACTAGTGA
TGACGCGGAGGATCCTGATCGTCTGTATTCTTTATTTGCTGTTGTTGTTC
ATGTTGGTTCAGGTCCTAATCAAGGTCATTATGTATCTCTTATCAAGTCA
CACAGGCAATGGTTAATGTTCGATGACGATGCGGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGTGTATACGGCGTGACACAGGAGAGTGCACAAAGCA
CTGAGGCAGGGTACATATTGTTTTACGAGCAAGCTAATGCCTCTTAG

protein sequence of Gchil6398.t1

>Gchil6398.t1 ID=Gchil6398.t1|Name=Gchil6398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=449bp
MGSAISTGNKLEKALHADLPEDERYFGLENFGNTCYCNSVLQALYFCEPF
RKAVLDYTNNRRIAKPQPIDSRVNSSLFSTAPSLLPKTANSTPLGNSVSN
VARTTESASPSEYGPSTNANFLDSSENEAEETMLTALGDLFMQIATQKKR
TGSVPPKTFVNKLRQENELFSSYMHQDAHEFLNFILNEVVECLHKENSAK
RQREQNGISKDSYSNYLTNVNGKLQNGTAITPHHDTVSEERGNPKTFVHE
LFEGHLSNEVRCLCCETVTQRVESFFDLSVDVEQNSSLTSCLRNFSSTEL
LEKQDKFFCDACCSLQEAERRMRIKQLPKILALHLKRFKYVEPLGKYKKL
NYRVVFPLELRLCNTSDDAEDPDRLYSLFAVVVHVGSGPNQGHYVSLIKS
HRQWLMFDDDAVEPKDEGEIQSVYGVTQESAQSTEAGYILFYEQANAS*

mRNA from alignment at tig00000196_pilon:656969..658315-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6398.t1 ID=Gchil6398.t1|Name=Gchil6398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000196_pilon:656969..658315- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTTCCGCCATCTCCACGGGCAATAAGCTGGAGAAAGCTCTGCATGC
CGACCTCCCTGAGGATGAACGATACTTTGGCCTAGAGAACTTTGGTAATA
CCTGTTATTGTAACTCCGTGCTGCAGGCGCTGTACTTTTGCGAACCGTTT
CGGAAGGCGGTTTTGGATTACACCAACAACCGAAGAATCGCCAAGCCGCA
ACCGATTGACTCCAGAGTCAACTCCAGTTTGTTCTCCACCGCCCCGTCGT
TGCTGCCCAAGACAGCCAATTCCACACCCCTTGGGAACTCCGTTTCTAAC
GTCGCGCGAACAACAGAATCCGCCTCGCCGAGTGAATATGGCCCCTCTAC
CAACGCCAACTTTCTTGACTCGAGCGAGAATGAGGCTGAGGAAACAATGC
TTACTGCTCTTGGCGATTTGTTTATGCAGATTGCCACGCAAAAGAAGCGC
ACTGGCTCAGTCCCTCCAAAGACGTTTGTGAACAAGCTGCGCCAGGAAAA
TGAGCTCTTCTCGAGTTACATGCATCAGGATGCTCATGAGTTTCTCAACT
TTATTCTGAATGAGGTTGTCGAGTGTCTGCACAAGGAAAACTCTGCGAAG
CGTCAACGCGAGCAGAATGGTATTTCAAAAGACTCATACTCGAATTACCT
CACAAACGTCAACGGAAAGCTGCAAAACGGCACAGCCATTACACCCCATC
ACGACACGGTTTCCGAAGAGAGGGGAAATCCGAAGACATTTGTGCATGAG
TTGTTTGAAGGTCATCTATCTAATGAGGTACGATGTCTGTGTTGCGAAAC
TGTGACGCAGAGAGTGGAGTCATTCTTTGACTTGAGCGTCGATGTGGAAC
AAAACTCATCGCTCACGTCATGTCTTCGAAACTTCTCCTCCACCGAGCTG
CTTGAAAAGCAGGACAAGTTTTTCTGTGACGCATGTTGTTCACTTCAGGA
AGCGGAGCGACGTATGAGAATCAAGCAGTTGCCGAAGATTCTTGCATTGC
ATCTGAAACGTTTCAAGTATGTCGAGCCGTTAGGCAAATATAAGAAGCTC
AACTATCGTGTCGTATTTCCGCTCGAGCTGCGTCTTTGTAACACTAGTGA
TGACGCGGAGGATCCTGATCGTCTGTATTCTTTATTTGCTGTTGTTGTTC
ATGTTGGTTCAGGTCCTAATCAAGGTCATTATGTATCTCTTATCAAGTCA
CACAGGCAATGGTTAATGTTCGATGACGATGCGGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGTGTATACGGCGTGACACAGGAGAGTGCACAAAGCA
CTGAGGCAGGGTACATATTGTTTTACGAGCAAGCTAATGCCTCTTAG

Coding sequence (CDS) from alignment at tig00000196_pilon:656969..658315-

>Gchil6398.t1 ID=Gchil6398.t1|Name=Gchil6398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00000196_pilon:656969..658315- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTTCCGCCATCTCCACGGGCAATAAGCTGGAGAAAGCTCTGCATGC
CGACCTCCCTGAGGATGAACGATACTTTGGCCTAGAGAACTTTGGTAATA
CCTGTTATTGTAACTCCGTGCTGCAGGCGCTGTACTTTTGCGAACCGTTT
CGGAAGGCGGTTTTGGATTACACCAACAACCGAAGAATCGCCAAGCCGCA
ACCGATTGACTCCAGAGTCAACTCCAGTTTGTTCTCCACCGCCCCGTCGT
TGCTGCCCAAGACAGCCAATTCCACACCCCTTGGGAACTCCGTTTCTAAC
GTCGCGCGAACAACAGAATCCGCCTCGCCGAGTGAATATGGCCCCTCTAC
CAACGCCAACTTTCTTGACTCGAGCGAGAATGAGGCTGAGGAAACAATGC
TTACTGCTCTTGGCGATTTGTTTATGCAGATTGCCACGCAAAAGAAGCGC
ACTGGCTCAGTCCCTCCAAAGACGTTTGTGAACAAGCTGCGCCAGGAAAA
TGAGCTCTTCTCGAGTTACATGCATCAGGATGCTCATGAGTTTCTCAACT
TTATTCTGAATGAGGTTGTCGAGTGTCTGCACAAGGAAAACTCTGCGAAG
CGTCAACGCGAGCAGAATGGTATTTCAAAAGACTCATACTCGAATTACCT
CACAAACGTCAACGGAAAGCTGCAAAACGGCACAGCCATTACACCCCATC
ACGACACGGTTTCCGAAGAGAGGGGAAATCCGAAGACATTTGTGCATGAG
TTGTTTGAAGGTCATCTATCTAATGAGGTACGATGTCTGTGTTGCGAAAC
TGTGACGCAGAGAGTGGAGTCATTCTTTGACTTGAGCGTCGATGTGGAAC
AAAACTCATCGCTCACGTCATGTCTTCGAAACTTCTCCTCCACCGAGCTG
CTTGAAAAGCAGGACAAGTTTTTCTGTGACGCATGTTGTTCACTTCAGGA
AGCGGAGCGACGTATGAGAATCAAGCAGTTGCCGAAGATTCTTGCATTGC
ATCTGAAACGTTTCAAGTATGTCGAGCCGTTAGGCAAATATAAGAAGCTC
AACTATCGTGTCGTATTTCCGCTCGAGCTGCGTCTTTGTAACACTAGTGA
TGACGCGGAGGATCCTGATCGTCTGTATTCTTTATTTGCTGTTGTTGTTC
ATGTTGGTTCAGGTCCTAATCAAGGTCATTATGTATCTCTTATCAAGTCA
CACAGGCAATGGTTAATGTTCGATGACGATGCGGTAGAACCGAAGGACGA
AGGCGAAATTCAAAGTGTATACGGCGTGACACAGGAGAGTGCACAAAGCA
CTGAGGCAGGGTACATATTGTTTTACGAGCAAGCTAATGCCTCTTAG