Gchil6343.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6343.t1
Unique NameGchil6343.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length422
Homology
BLAST of Gchil6343.t1 vs. uniprot
Match: A0A1X6P235_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P235_PORUM)

HSP 1 Score: 272 bits (696), Expect = 3.760e-84
Identity = 123/215 (57.21%), Postives = 152/215 (70.70%), Query Frame = 0
Query:  213 PGAGENFWKWFQDTKETE---GTTKVSCP-SKSERVCLMFYKFLKKYKIRCVYDVSCARNLDWMPEVVSKVGKELWGFKYYCNTPDAG---DLSRAKEKLAGLSYVQFAPDLWWRTGFAEDTQLLFAWDILPHIPYGRIWSFFVKSKTQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNVTEPGETEKRQLLFYETDMLPDNL 420
            PG  ENFWKWFQ TK  E    +  V CP   + R+C  FYK+L+KYKIR V D SC  N+ WMP V+ +VG ELWGF+YYC    AG       AK  L+   +V+F    WW  GF +   L+F WD+LPH  YGR+WSFFV ++   +KYLLFDNYPG++N+PSPKR+++N+RKHPF+FPAAKEVVQNVTEPGE  KRQLLFYETD LP++L
Sbjct:  199 PGHDENFWKWFQQTKGAEHKDASKAVRCPPGDTHRLCETFYKYLRKYKIRTVLDASCGANVAWMPAVLRQVGSELWGFRYYCMHAGAGAEDGAEAAKVALSPFPFVEFVRSEWWHGGFPDGLDLVFCWDVLPHTAYGRVWSFFVLARKHGVKYLLFDNYPGLLNNPSPKRKFINVRKHPFKFPAAKEVVQNVTEPGEHIKRQLLFYETDALPEHL 413          
BLAST of Gchil6343.t1 vs. uniprot
Match: R7QHX1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHX1_CHOCR)

HSP 1 Score: 243 bits (620), Expect = 2.390e-72
Identity = 101/164 (61.59%), Postives = 129/164 (78.66%), Query Frame = 0
Query:  211 ADPGAGENFWKWFQDTKETEG---TTKVSCPSKSERVCLMFYKFLKKYKIRCVYDVSCARNLDWMPEVVSKVGKELWGFKYYCNTPDAGDLSRAKEKLAGLSYVQFAPDLWWRTGFAEDTQLLFAWDILPHIPYGRIWSFFVKSKTQNIKYLLFDNYPGIMNDP 371
            A+PGAGENFW+WFQ+TK +E    +  +SCP ++ER+C M YK+L+KYKIR ++D SCA N DWMPEV+ K G ELWGFKYYC+ P    L   KEK A L++V++APD+WWR G+ +DT+LLFAWD LPHI YGR+W+FFVK+K Q IKY+L DNYPG+ NDP
Sbjct:  278 AEPGAGENFWQWFQETKGSEKGPVSGSISCPEETERLCQMTYKYLRKYKIRTIFDASCANNGDWMPEVLRKSGNELWGFKYYCSVPKDEQLDYVKEKFASLNFVEYAPDVWWRDGYPDDTELLFAWDTLPHIAYGRVWNFFVKAKKQEIKYILVDNYPGMTNDP 441          
BLAST of Gchil6343.t1 vs. uniprot
Match: A0A7S1EPQ2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPQ2_9RHOD)

HSP 1 Score: 186 bits (472), Expect = 3.710e-52
Identity = 87/215 (40.47%), Postives = 126/215 (58.60%), Query Frame = 0
Query:  218 NFWKWFQDTKETEGTT----KVSCPSKSER--VCLMFYKFLKKYKIRCVYDVSCARNLDWMPEVVSKVGKELWGFKYYCNTPDAGDLSRAK--EKLAGLSY-VQFAPDLWWRT---GFAEDTQLLFAWDILPHIPYGRIWSFFVKSKTQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNVTEPGETE---KRQLLFYETDMLP 417
            +F  WF+   E E       K+ CP K     +C   ++ L+KYK+R V DV+C +   W P V+ K+  E WGFKY C  PD  ++ + K  ++L  +   V +   +WW+    G   + +  FAWD L H  YGR+WSFF  S++   KY LFDNYP + NDPSPKR+++N+R+HPF+F AAK+ +QNVT+  E     KRQL+ Y  + +P
Sbjct:   90 DFLNWFKSQSEREQNATERGKIECPEKHPDGILCKTLFRLLRKYKVRIVVDVACHKTASWTPLVIEKLAAEYWGFKYICVLPDKEEMDKLKASKQLERVEQNVNYIEGMWWKPLDFGGQLNAEFYFAWDTLCHTSYGRVWSFFSSSQSSGAKYYLFDNYPALSNDPSPKREFINVRRHPFKFGAAKDTIQNVTDVDENPDDVKRQLVMYTAETIP 304          
BLAST of Gchil6343.t1 vs. uniprot
Match: A0A1X6NN90_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NN90_PORUM)

HSP 1 Score: 120 bits (300), Expect = 1.050e-27
Identity = 61/168 (36.31%), Postives = 83/168 (49.40%), Query Frame = 0
Query:  272 MPEVVSKVGKELWGFKYYCNTPDAGDLSRAKEKLAGLSYVQFAPDLWWRTGFAEDTQ--------------------------------------LLFAWDILPHIPYGRIWSFFVKSKTQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNVTEPG 401
            M  VV+K+G ELWGF Y C   +A + +  +   A  +                                                         L+FAWD+L H PYGR+W FFV+++ + +  +LFDNYPG++N+PSPKR+YLN+RKHPF+F  A EVVQNVTE G
Sbjct:    1 MGAVVAKLGAELWGFSYTCMAAEADETAANRAAFAVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAVGLVFAWDVLAHTPYGRVWGFFVRARQEGVGLVLFDNYPGLVNNPSPKRRYLNVRKHPFKFGPAAEVVQNVTEGG 168          
The following BLAST results are available for this feature:
BLAST of Gchil6343.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1X6P235_PORUM3.760e-8457.21Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QHX1_CHOCR2.390e-7261.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1EPQ2_9RHOD3.710e-5240.47Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6NN90_PORUM1.050e-2736.31Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..110
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 31..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..421
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..54
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 43..54
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:167000..168345 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6343.t1Gchil6343.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000196_pilon 167000..168345 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6343.t1 ID=Gchil6343.t1|Name=Gchil6343.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=422bp
MASTLDAMSSARSRRRRYAKLRSQRSNAPRALAAALFFFLLCYEMVVLRP
PVVPKPSVSSRGAVPPPPPVAAASQAAPPQEPAQSASSPSAPPPRSPPPT
SDSHIVAKAAVSPSSITARLAELQKLSSSTIPPSTSNSLRVAADAETSPP
PAFHPLHKRHSRPAHHVSPSLAEMEKVAADHAEDADSDAASKRPAPARDS
SHQPSKSEHRADPGAGENFWKWFQDTKETEGTTKVSCPSKSERVCLMFYK
FLKKYKIRCVYDVSCARNLDWMPEVVSKVGKELWGFKYYCNTPDAGDLSR
AKEKLAGLSYVQFAPDLWWRTGFAEDTQLLFAWDILPHIPYGRIWSFFVK
SKTQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNVTEP
GETEKRQLLFYETDMLPDNLQ*
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