Gchil6315.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6315.t1
Unique NameGchil6315.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length501
Homology
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BLAST of Gchil6315.t1 vs. uniprot
Match: A0A2V3J053_9FLOR (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J053_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 2.650e-50
Identity = 398/500 (79.60%), Postives = 429/500 (85.80%), Query Frame = 0 
Query:    1 MTCAPIVPPQNDNSDIPSLPVLAQLELRAGDPAAAARLLSKHLSEAPADAKSWLEYGKASRQAHGNKHASQVMERAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVRRNNTAPLYTAYAGHEAGRGNLEKARFLYMRAAEANPKDKLVWHAWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFREAADRVGEGKAATLYMNXXXXXXXXXXXXXXXXXXKRGIGSRKERPQDVVRLLHSXXXXXXXXXXXXXXXXXXXXALRIDSRDCKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWKHFAGDGGIERARELFVETTRQRGRDASLLRVWAAFEEDQGDIGMAGRLRRLANKRK 500
            MTC PI P  +DNSDIP+LP LAQLELRAGD AAAARLLSKH+++ P DA+SWL YGKA R AHG K A         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + V+  +TA LYTAYAG EA RGN ++ARFLYMRAA  +PKDKLVWH   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EAA R+G+  +A L+  XXXXXXXXXXXXXXXXXX+RG+  R ER  DVVRL+H XXXXXXXXXXXXXXXXXXXXALR+++RD +TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      EWKHF  DGG++RARELF  T+RQ+  DASLLRVWA+ EEDQGD G+A RLR LAN++K
Sbjct:   42 MTCVPITPTPHDNSDIPALPTLAQLELRAGDFAAAARLLSKHVAQQPYDARSWLAYGKAVRTAHGPKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGVKRVQTASTAALYTAYAGLEANRGNAQRARFLYMRAAGVDPKDKLVWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAAQRLGKRNSALLFSXXXXXXXXXXXXXXXXXXXQRGVSGRSERRDDVVRLIHXXXXXXXXXXXXXXXXXXXXXALRVNARDYRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLAILEWKHFGHDGGVDRARELFSRTSRQKRHDASLLRVWASLEEDQGDSGLAERLRSLANRKK 541
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BLAST of Gchil6315.t1 vs. uniprot
Match: R7QHJ0_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ0_CHOCR)

HSP 1 Score: 108 bits (270), Expect = 1.240e-21
Identity = 316/483 (65.42%), Postives = 355/483 (73.50%), Query Frame = 0 
Query:   18 SLPVLAQLELRAGDPAAAARLLSKHLSEAPADAKSWLEYGKASRQAHGNKHASQVMERAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVRRNNTAPLYTAYAGHEAGRGNLEKARFLYMRAAEANPKDKLVWHAWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFREAADRVGE-GKAATLYMNXXXXXXXXXXXXXXXXXXKRGIGSRKERPQDVVRLLHSXXXXXXXXXXXXXXXXXXXXALRIDSRDCKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWKHFAGDGGIERARELFVETTRQRGRDASLLRVWAAFEEDQGDIGMAGRLRRLANKR 499
            SL   A LELRAGD AAAARL  +HL+  P DA+ WL++ KA R+A     A+ +++RAV                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + V +     LY  YA   A     +KARFLYMR AEA+PKDKL+W AWA           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EA +R+G+  +AA +++ XXXXXXXXXXXXXXXXXX+ G   ++ERPQD+VRLLHS                    AL ++ RD +TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE KHFA +GG+ RARELF+ T++Q  + AS++R WA FEE QGD  +A RLR +A KR
Sbjct:   30 SLAQRAHLELRAGDVAAAARLFDQHLTLRPDDARVWLDWAKAERRADPAA-AAAILQRAVATVPRDPYLWHFRAACVTAANGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGVKNVPKIRAVVLYAGYAQLAANGRMPDKARFLYMRGAEADPKDKLIWQAWACLEEREGNVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGERIGQDARAAVMFLGXXXXXXXXXXXXXXXXXXRAGSIRKRERPQDLVRLLHSWAGLERKEGEAEEARRLYRRALDLNERDHRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAKHFAEEGGVGRARELFLRTSKQMRKPASVIRAWAGFEEQQGDAELATRLRCVAEKR 511
The following BLAST results are available for this feature:
BLAST of Gchil6315.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J053_9FLOR2.650e-5079.60PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
R7QHJ0_CHOCR1.240e-2165.42TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 132..164
e-value: 7.3
score: 15.6
coord: 202..234
e-value: 0.14
score: 21.3
coord: 98..130
e-value: 17.0
score: 13.8
coord: 304..338
e-value: 700.0
score: 1.9
coord: 270..302
e-value: 2.6
score: 17.0
coord: 64..96
e-value: 990.0
score: 0.8
coord: 166..200
e-value: 16.0
score: 14.0
coord: 236..268
e-value: 0.29
score: 20.2
coord: 30..62
e-value: 890.0
score: 1.1
coord: 378..410
e-value: 390.0
score: 3.8
coord: 450..482
e-value: 720.0
score: 1.8
coord: 340..376
e-value: 330.0
score: 4.3
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 118..151
e-value: 91.0
score: 6.5
coord: 152..185
e-value: 77.0
score: 7.2
coord: 256..289
e-value: 380.0
score: 1.1
coord: 222..255
e-value: 250.0
score: 2.6
coord: 364..397
e-value: 0.024
score: 23.8
coord: 84..117
e-value: 89.0
score: 6.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 364..397
score: 8.3489
NoneNo IPR availablePFAMPF13432TPR_16coord: 297..353
e-value: 0.005
score: 17.4
NoneNo IPR availablePFAMPF13424TPR_12coord: 363..423
e-value: 6.1E-8
score: 32.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 21..152
e-value: 4.3E-20
score: 74.0
coord: 153..357
e-value: 5.5E-36
score: 126.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 358..500
e-value: 5.1E-11
score: 44.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 22..186
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 326..444
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 156..360
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 155..427
coord: 22..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:88967..90469 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6315.t1Gchil6315.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000196_pilon 88967..90469 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6315.t1 ID=Gchil6315.t1|Name=Gchil6315.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=501bp
MTCAPIVPPQNDNSDIPSLPVLAQLELRAGDPAAAARLLSKHLSEAPADA
KSWLEYGKASRQAHGNKHASQVMERAVKQVCDDAYVWHFYANCEAAASGK
SSARKVYKRALDHCPHNAVLLSALASLESNASNFATASKLFRRAVEADAV
DPYIYMQWANMEMRRKNFSQASSVFERGVRAVRRNNTAPLYTAYAGHEAG
RGNLEKARFLYMRAAEANPKDKLVWHAWASLEHRTGNNGRARELFERAII
ADPSFPCSWQAWGLLEEREQNFNAARCLYERGTRADPRDPVNWQAWALLE
ARTGNVTEAKRLFREAADRVGEGKAATLYMNWARLEADTGDIGTARTLFK
RGIGSRKERPQDVVRLLHSWAAVERKQGNTDKARELYKRALRIDSRDCKT
LHALSTLEQEDGNCDEARELLKRNVRFSSGDLMAVRSLAMLEWKHFAGDG
GIERARELFVETTRQRGRDASLLRVWAAFEEDQGDIGMAGRLRRLANKRK
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like