Gchil7371.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7371.t1
Unique Name	Gchil7371.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:723246..723878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705505.1
Preferred name	STX6
PFAMs	SNARE,Syntaxin-6_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02925,ko:K03691,ko:K08498,ko:K08499,ko:K08500
KEGG Reaction	R09295
KEGG Pathway	ko00514,ko03010,ko04130,map00514,map03010,map04130
KEGG Module	M00177
GOs	GO:0000138,GO:0000139,GO:0000149,GO:0001505,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007032,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008417,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0016740,GO:0016757,GO:0016758,GO:0017156,GO:0019538,GO:0019905,GO:0022406,GO:0023052,GO:0023061,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030285,GO:0030424,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0034645,GO:0036065,GO:0036066,GO:0036211,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045335,GO:0046903,GO:0046907,GO:0046922,GO:0048278,GO:0048284,GO:0048471,GO:0048489,GO:0050789,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055037,GO:0060341,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0090161,GO:0090174,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098563,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096,GO:0150034,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903827
Evalue	3.1e-25
EggNOG OGs	KOG3202@1\|root,KOG3202@2759\|Eukaryota
EC	2.4.1.221
Description	SNAP receptor activity
COG category	U
CAZy	GT65,GT68
BRITE	br01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7371	Gchil7371	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 723246..723878 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7371.t1.start1	Gchil7371.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 723246..723248 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7371.t1.CDS1	Gchil7371.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 723246..723878 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7371.t1.exon1	Gchil7371.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 723246..723878 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7371.t1.stop1	Gchil7371.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 723876..723878 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7371.t1	Gchil7371.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 723246..723878 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:723246..723878+
coding sequence from alignment at tig00000007_pilon:723246..723878+

mRNA sequence

>Gchil7371.t1 ID=Gchil7371.t1|Name=Gchil7371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=211bp
MTQEDPFPIVQEEVRAAWSSLSKDISHISEAQYQSRLQALECDVKDLSDA
IQVAKQDRLRFGLSEHEIASRQHFVTDMQRNVLALKKRNELAPSNSTSRV
EEIRRANDSFIGNEVRQQEMLMEHQDVHLGELANAVERIGIMGRDMHQEL
EEQGQMLDDLGGEMVDARSKLKAVHRKLNKFIEETGPRNFCTIVGLCITF
VVLTLLVVTT*

spliced messenger RNA

>Gchil7371.t1 ID=Gchil7371.t1|Name=Gchil7371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000007_pilon:723246..723878+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACAAGAAGACCCGTTCCCAATCGTTCAGGAAGAGGTGCGAGCTGC
TTGGTCCTCGCTTTCAAAAGACATTTCTCACATATCCGAAGCGCAATATC
AATCAAGACTGCAAGCTCTAGAATGCGACGTGAAAGATCTCTCTGATGCC
ATACAAGTCGCAAAACAAGATAGGCTCCGTTTCGGACTATCAGAGCACGA
GATTGCCTCTCGTCAACATTTTGTAACCGACATGCAACGAAATGTACTAG
CATTGAAGAAGCGAAACGAACTTGCTCCCAGTAATTCTACATCGCGTGTA
GAAGAAATTCGTCGCGCAAATGACTCTTTTATTGGCAATGAGGTGAGACA
ACAGGAAATGCTGATGGAACATCAGGACGTTCACTTGGGTGAGCTGGCAA
ACGCTGTTGAACGAATTGGCATCATGGGCAGAGATATGCACCAAGAACTC
GAAGAACAGGGGCAGATGCTCGACGATCTTGGCGGTGAAATGGTCGACGC
ACGTTCCAAATTGAAGGCTGTGCACCGCAAACTGAACAAGTTCATCGAAG
AAACGGGACCCAGAAATTTCTGCACAATTGTAGGCCTTTGTATCACTTTC
GTTGTACTCACTTTACTGGTCGTGACTACTTGA

protein sequence of Gchil7371.t1

>Gchil7371.t1 ID=Gchil7371.t1|Name=Gchil7371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=211bp
MTQEDPFPIVQEEVRAAWSSLSKDISHISEAQYQSRLQALECDVKDLSDA
IQVAKQDRLRFGLSEHEIASRQHFVTDMQRNVLALKKRNELAPSNSTSRV
EEIRRANDSFIGNEVRQQEMLMEHQDVHLGELANAVERIGIMGRDMHQEL
EEQGQMLDDLGGEMVDARSKLKAVHRKLNKFIEETGPRNFCTIVGLCITF
VVLTLLVVTT*

mRNA from alignment at tig00000007_pilon:723246..723878+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7371.t1 ID=Gchil7371.t1|Name=Gchil7371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000007_pilon:723246..723878+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACAAGAAGACCCGTTCCCAATCGTTCAGGAAGAGGTGCGAGCTGC
TTGGTCCTCGCTTTCAAAAGACATTTCTCACATATCCGAAGCGCAATATC
AATCAAGACTGCAAGCTCTAGAATGCGACGTGAAAGATCTCTCTGATGCC
ATACAAGTCGCAAAACAAGATAGGCTCCGTTTCGGACTATCAGAGCACGA
GATTGCCTCTCGTCAACATTTTGTAACCGACATGCAACGAAATGTACTAG
CATTGAAGAAGCGAAACGAACTTGCTCCCAGTAATTCTACATCGCGTGTA
GAAGAAATTCGTCGCGCAAATGACTCTTTTATTGGCAATGAGGTGAGACA
ACAGGAAATGCTGATGGAACATCAGGACGTTCACTTGGGTGAGCTGGCAA
ACGCTGTTGAACGAATTGGCATCATGGGCAGAGATATGCACCAAGAACTC
GAAGAACAGGGGCAGATGCTCGACGATCTTGGCGGTGAAATGGTCGACGC
ACGTTCCAAATTGAAGGCTGTGCACCGCAAACTGAACAAGTTCATCGAAG
AAACGGGACCCAGAAATTTCTGCACAATTGTAGGCCTTTGTATCACTTTC
GTTGTACTCACTTTACTGGTCGTGACTACTTGA

Coding sequence (CDS) from alignment at tig00000007_pilon:723246..723878+

>Gchil7371.t1 ID=Gchil7371.t1|Name=Gchil7371.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000007_pilon:723246..723878+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACAAGAAGACCCGTTCCCAATCGTTCAGGAAGAGGTGCGAGCTGC
TTGGTCCTCGCTTTCAAAAGACATTTCTCACATATCCGAAGCGCAATATC
AATCAAGACTGCAAGCTCTAGAATGCGACGTGAAAGATCTCTCTGATGCC
ATACAAGTCGCAAAACAAGATAGGCTCCGTTTCGGACTATCAGAGCACGA
GATTGCCTCTCGTCAACATTTTGTAACCGACATGCAACGAAATGTACTAG
CATTGAAGAAGCGAAACGAACTTGCTCCCAGTAATTCTACATCGCGTGTA
GAAGAAATTCGTCGCGCAAATGACTCTTTTATTGGCAATGAGGTGAGACA
ACAGGAAATGCTGATGGAACATCAGGACGTTCACTTGGGTGAGCTGGCAA
ACGCTGTTGAACGAATTGGCATCATGGGCAGAGATATGCACCAAGAACTC
GAAGAACAGGGGCAGATGCTCGACGATCTTGGCGGTGAAATGGTCGACGC
ACGTTCCAAATTGAAGGCTGTGCACCGCAAACTGAACAAGTTCATCGAAG
AAACGGGACCCAGAAATTTCTGCACAATTGTAGGCCTTTGTATCACTTTC
GTTGTACTCACTTTACTGGTCGTGACTACTTGA