Gchil7608.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7608.t1
Unique NameGchil7608.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length266
Homology
BLAST of Gchil7608.t1 vs. uniprot
Match: A0A2V3ITP2_9FLOR (Vacuolar protein sorting-associated protein 28-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITP2_9FLOR)

HSP 1 Score: 403 bits (1035), Expect = 7.590e-140
Identity = 212/277 (76.53%), Postives = 230/277 (83.03%), Query Frame = 0
Query:    1 MAARVPESGYWEPQVPAAVSVP----PHTTY--------NPSSSDPTNFAMQIPPPPQLAIPQAPLFSTKPPSGTPVKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKAGVPATVAVVSNTTKDLGKFVMRCTTLFHYCTSCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEFERAYND 265
            MA RVP S  WE QVP AVS+P    PH            P         + IP PP L  P   LFS +PPSGTPVKLF++K++KEMYEDMSAVFSLLTATERLENIWARRGAIAQ+DYEQQCEKLIQQ+RVLRTSTEKSIPN+DKFIAEY+CKASKARPRLKAGVPATVA+V++T KDLGKFVMRCT+LFHYC SCI+MNQRAVNVLLPDLTSLMKTLARVPALG+NFEF  KIR WVEKLNAMPAND+LTEQDAAQLKLDLD GYAEFE AYND
Sbjct:    1 MATRVPPSNVWEAQVPPAVSLPQPSHPHPXXXXXXXXHAQPLQPLYPQQVLHIPGPPPLQTPHMSLFSARPPSGTPVKLFADKSDKEMYEDMSAVFSLLTATERLENIWARRGAIAQHDYEQQCEKLIQQFRVLRTSTEKSIPNLDKFIAEYDCKASKARPRLKAGVPATVAIVTSTPKDLGKFVMRCTSLFHYCISCIEMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFAAKIRTWVEKLNAMPANDDLTEQDAAQLKLDLDTGYAEFESAYND 277          
BLAST of Gchil7608.t1 vs. uniprot
Match: R7QHR5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHR5_CHOCR)

HSP 1 Score: 246 bits (628), Expect = 1.490e-78
Identity = 132/216 (61.11%), Postives = 159/216 (73.61%), Query Frame = 0
Query:   54 LFSTKPPSGTPVKLFSNKAEKEM----YEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKAGVPATVAVVSNTTKDLGKFVMRCTTLFHYCTSCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEFERAYND 265
            +FS+ PP G PV+L+ +K ++E     YEDMSAVFS++TATERLENIWAR GAI+Q+DYE+QCE LIQQY+VL  ST + IP IDKFI EY+ KASKARPRL  G P TV       K   KFV RCT+LFH+  +CID NQ AV  LLPDL SLMKTL  + +L  +F F  ++  WVEKLNAMPA+ ELT  DA+QLKLDLDNGYAE E A ++
Sbjct:   26 VFSSAPPRGEPVRLYRDKRDEERNTDKYEDMSAVFSVITATERLENIWARWGAISQDDYERQCELLIQQYKVLTASTAEFIPKIDKFIHEYDIKASKARPRLACGYPVTVKGPKEP-KHQNKFVFRCTSLFHHLGTCIDTNQVAVGFLLPDLISLMKTLKSISSLPQDFVFNARVEFWVEKLNAMPASFELTFDDASQLKLDLDNGYAELEAAISN 240          
BLAST of Gchil7608.t1 vs. uniprot
Match: D8RLH9_SELML (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RLH9_SELML)

HSP 1 Score: 128 bits (321), Expect = 1.670e-32
Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRLK-AGVPATVAVVSNTTK--DLGKF---VMRCTTLFHYCTSC--IDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEF 259
            VKL+S+K E+EM+E+ + +F+++  TE+LE  + R  A++  DYE  C KLI Q+R L+ +    +P++D+F+A Y+     A  RL  +G+PATV   S T+   D G     V  C    HY T+   + +N  AV+ + P L  L+  L RVP L  +FE   K R W+ KLN M A+DELTEQ A QL  DLD+ Y  F
Sbjct:   24 VKLWSDKREREMFENFADLFAIIKTTEKLEKAYVR-DAMSARDYEPWCTKLIAQFRTLKNALRDVVPDVDRFMAAYKMDCPAAHNRLLVSGIPATVEHKSATSSSFDAGATAVAVAECVQ--HYITAMDSLKLNMVAVDQIHPLLLDLLSALNRVPQLTADFEGKVKTRDWIAKLNKMGASDELTEQQARQLLFDLDSSYNAF 223          
BLAST of Gchil7608.t1 vs. uniprot
Match: A0A448Z4F2_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4F2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 9.050e-31
Identity = 69/199 (34.67%), Postives = 116/199 (58.29%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVL-RTSTEKSIPNIDKFIAEYECKASKARPRL-KAGVPATVAVVSNTTKDLGKFVMRCTTLFHYCTSCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEFER 261
            V+L+S+  E++ Y+D +A+++++ ATE LE  ++R  AI Q +Y Q+C KLI Q+R+  + +  K     + F+  Y+    +A  RL   GVP  +   +  T D+   V +    F      + +  R V+ L P L+ LM +L ++P + ++FE   K++ W++KLN M A DE+TE+D+ QL +DLD+ Y EF R
Sbjct:   12 VELYSSSRERQAYDDQAALYAIILATEHLERAYSR-DAITQQEYVQECNKLISQFRLAEKAALPKLNMTTESFMELYQMDCPRATERLLNMGVPEPIRTATGQTADVAVTVAKTVENFITAMDAVKIETRFVDELQPLLSDLMDSLTKLPDIPDDFEPNHKVKKWLQKLNGMRAIDEITEEDSRQLSMDLDSAYVEFTR 209          
BLAST of Gchil7608.t1 vs. uniprot
Match: A0A2R6W1H5_MARPO (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W1H5_MARPO)

HSP 1 Score: 122 bits (305), Expect = 2.450e-30
Identity = 75/198 (37.88%), Postives = 119/198 (60.10%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRLK-AGVPATVAVVSNTTKDLGKFVMRCTTLFHYCTSC--IDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEF 259
            VKL+++K E+EMY++ + +F+++  TE+LE  + R   I+  +YE  C KLI Q+R L+T+ + ++P++++F+  Y+     A  RL  +G+PATV   S  + D G  V     + HY T+   + +N  AV+ + P L+ L+ +L+RVP L  +FE   K R W+  LN M A DEL EQ A QL  DL++ Y  F
Sbjct:    9 VKLWTDKREREMYDNFADLFAIIKTTEKLEKAYVR-DVISAKEYEPACAKLIAQFRTLKTTLKDTVPDVERFMEAYKMDCPAAANRLIISGIPATVEHKS-ASSDSGTAVAVAECVQHYITAMDSLKLNMVAVDQVHPLLSDLVASLSRVPQLSPDFEGKVKGREWITILNKMGAADELNEQQARQLLFDLESSYNAF 204          
BLAST of Gchil7608.t1 vs. uniprot
Match: I0Z9P7_COCSC (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z9P7_COCSC)

HSP 1 Score: 120 bits (302), Expect = 7.370e-30
Identity = 71/198 (35.86%), Postives = 117/198 (59.09%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRL-KAGVPATVAVVSNTTKDLGKFVMRCTTLFHYCTSC--IDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEF 259
            +KL+S+K E+EMYE+ + +F+++  TE+LE  + R  AI+  DYE  C KLI Q+R L  + + ++P+++KF+A+Y  +   A  RL  +G+PATV             V    T+ H+ T+   + +N  AV+ L P L  LM+++ +V  L  +F    K++ W+ KL+ MPA+ EL E D  QL  +L++ Y +F
Sbjct:   10 IKLYSSKKEQEMYENFADLFAIVKTTEKLERAYVR-DAISAKDYEPLCAKLIAQFRTLWETLKDTVPDVEKFMADYNMQCPMAAKRLIYSGMPATVEHGKPRCPSHPSSVAVAETVQHFITAMDSLKLNMVAVDQLYPVLNDLMQSMNKVVQLPGDFAGKVKVKAWITKLHNMPASKELEEADVRQLLFELESSYNDF 206          
BLAST of Gchil7608.t1 vs. uniprot
Match: A0A6V2IMC3_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IMC3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.270e-29
Identity = 71/200 (35.50%), Postives = 116/200 (58.00%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRLKA-GVPATVAVVSNTTKDLGKFVMRCTTLFHYCTS--CIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEFER 261
            ++LF +  E+E YE+++ +++++ ATE LE  +AR  AI Q +Y  +C KLI Q+R+   +   S    + F+  Y+    +AR RL   GVP  +    ++   +   V    T+ H+ T+   + + QRAV+ L P L+ LM  L ++P   N+FE  KK++ W++ LN+M A D++ E DA QL  DLD+ YA+F R
Sbjct:   18 IELFESSKEREAYENLADLYTVIVATEHLERAYAR-DAITQQEYTSECNKLISQFRLAEKAALGSSMTTETFMQLYQMDCPRARERLLIMGVPEQIKTSDDSGHHVAVTVAE--TVQHFITAMDAVKLEQRAVDELQPLLSDLMDALTQLPETPNDFEPNKKVQTWLQTLNSMRAVDQIDEDDARQLYHDLDSAYADFTR 214          
BLAST of Gchil7608.t1 vs. uniprot
Match: A0A834SMB3_9FABA (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834SMB3_9FABA)

HSP 1 Score: 119 bits (297), Expect = 5.210e-29
Identity = 71/199 (35.68%), Postives = 116/199 (58.29%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRLK-AGVPATV---AVVSNTTKDLGKFVMRCTTLFHYCTSCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEF 259
            VKL+S+K E+EMYE+ + +++++ ATE+LE  + R   I+  +YE +C+KLI  ++ L +S + ++PNI++F   Y+     A  RL  +GVPATV   A  +++       V  C   F      + +N  AV+ + P L+ L  +L ++  L  +FE   K++ W+ +L+ M A DELTEQ A QL  DL++ Y  F
Sbjct:   20 VKLWSDKREREMYENFAELYAIIKATEKLEKAYVR-DVISSQEYEVECQKLIAHFKTLASSLKDTVPNIERFADTYKMDCPAAINRLLVSGVPATVEHRAAAASSASTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLYGSLNKLGILPPDFEGKTKMKEWIARLSKMGAADELTEQQARQLHFDLESSYNSF 217          
BLAST of Gchil7608.t1 vs. uniprot
Match: A0A1U8GKQ7_CAPAN (Vacuolar protein sorting-associated protein 28 homolog n=6 Tax=Solanoideae TaxID=424551 RepID=A0A1U8GKQ7_CAPAN)

HSP 1 Score: 117 bits (294), Expect = 9.380e-29
Identity = 70/199 (35.18%), Postives = 118/199 (59.30%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRL-KAGVPATV---AVVSNTTKDLGKFVMRCTTLFHYCTSCIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEF 259
            VKL+++K E+ MY++++ +F+++ ATE+LE  + R   I+ ++YE++C+KLI Q++ L ++ + ++PN+++F   Y+     A  RL  +GVPATV   A  + +T      V  C   F      + +N  AV+ + P L+ L  +L ++  L  +FE   K+  W+ +L+ M A DELTEQ A QL  DLD+ Y  F
Sbjct:    3 VKLWNDKHERVMYDNLADLFAIIKATEKLEKAYVR-DIISASEYEKECQKLIAQFKTLSSTLKDAVPNVERFHDTYKMDCPAALNRLVTSGVPATVEHRAAAAMSTASSAAVVAECVQNFITAMDSLKLNMVAVDQVHPVLSDLSSSLNKLSILPVDFEGKTKMSEWLSRLSKMGAADELTEQQARQLHFDLDSSYNSF 200          
BLAST of Gchil7608.t1 vs. uniprot
Match: A0A7S4J7U8_9STRA (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J7U8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.080e-28
Identity = 72/200 (36.00%), Postives = 114/200 (57.00%), Query Frame = 0
Query:   65 VKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARRGAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPRL-KAGVPATVAVVSNTTKDLGKFVMRCTTLFHYCTS--CIDMNQRAVNVLLPDLTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKLDLDNGYAEFER 261
            ++LF +  E+E Y++++ +++++ ATE LE  +AR  AI Q +Y  +C KLI Q+R+   +        + F+  Y+    +A  RL K GVP  +         +   V    T+ H+ T+   + + QRAV+ L P L+ LM  L R+P   ++FE  +KI  W++KLNAM A +++ E DA QL LDLD+ YAEF R
Sbjct:   26 IELFESSKEREAYDNLADLYTIILATEHLERSYAR-DAITQKEYTTECNKLISQFRLAEKAALGKTMTTETFMNLYQMDCPRATERLLKMGVPEQIKTSDAAGHHVAVTVAE--TVQHFITTMDAVKLEQRAVDELQPLLSDLMHALTRLPETPDDFEPNRKISKWLQKLNAMRAVEQIDEDDARQLYLDLDSAYAEFTR 222          
The following BLAST results are available for this feature:
BLAST of Gchil7608.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITP2_9FLOR7.590e-14076.53Vacuolar protein sorting-associated protein 28-lik... [more]
R7QHR5_CHOCR1.490e-7861.11Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
D8RLH9_SELML1.670e-3240.89Vacuolar protein sorting-associated protein 28 hom... [more]
A0A448Z4F2_9STRA9.050e-3134.67Vacuolar protein sorting-associated protein 28 hom... [more]
A0A2R6W1H5_MARPO2.450e-3037.88Vacuolar protein sorting-associated protein 28 hom... [more]
I0Z9P7_COCSC7.370e-3035.86Vacuolar protein sorting-associated protein 28 hom... [more]
A0A6V2IMC3_9STRA2.270e-2935.50Vacuolar protein sorting-associated protein 28 hom... [more]
A0A834SMB3_9FABA5.210e-2935.68Vacuolar protein sorting-associated protein 28 hom... [more]
A0A1U8GKQ7_CAPAN9.380e-2935.18Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7S4J7U8_9STRA1.080e-2836.00Vacuolar protein sorting-associated protein 28 hom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037206VPS28, C-terminal domain superfamilyGENE3D1.20.120.1130coord: 165..263
e-value: 5.3E-22
score: 79.6
IPR037206VPS28, C-terminal domain superfamilySUPERFAMILY140427VPS28 C-terminal domain-likecoord: 170..261
IPR038358VPS28, N-terminal domain superfamilyGENE3D1.20.1440.200coord: 65..159
e-value: 2.3E-22
score: 81.2
IPR007143Vacuolar protein sorting-associated Vps28PFAMPF03997VPS28coord: 80..261
e-value: 1.2E-40
score: 139.3
IPR007143Vacuolar protein sorting-associated Vps28PANTHERPTHR12937VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28coord: 64..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..37
IPR017898Vacuolar protein sorting-associated, VPS28, N-terminalPROSITEPS51313VPS28_Ncoord: 54..161
score: 11.136271
IPR017899Vacuolar protein sorting-associated, VPS28, C-terminalPROSITEPS51310VPS28_Ccoord: 168..264
score: 19.879288
IPR037202ESCRT assembly domainSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 64..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2199675..2200472 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7608.t1Gchil7608.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 2199675..2200472 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7608.t1 ID=Gchil7608.t1|Name=Gchil7608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MAARVPESGYWEPQVPAAVSVPPHTTYNPSSSDPTNFAMQIPPPPQLAIP
QAPLFSTKPPSGTPVKLFSNKAEKEMYEDMSAVFSLLTATERLENIWARR
GAIAQNDYEQQCEKLIQQYRVLRTSTEKSIPNIDKFIAEYECKASKARPR
LKAGVPATVAVVSNTTKDLGKFVMRCTTLFHYCTSCIDMNQRAVNVLLPD
LTSLMKTLARVPALGNNFEFGKKIRVWVEKLNAMPANDELTEQDAAQLKL
DLDNGYAEFERAYND*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037206VPS28_C_sf
IPR038358VPS28_N_sf
IPR007143Vps28
IPR017898VPS28_N
IPR017899VPS28_C
IPR037202ESCRT_assembly_dom