Gchil3421.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3421.t2
Unique NameGchil3421.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:1192852..1194207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4897.EEB05019
PFAMsDEAD,Helicase_C,OrsD
Max annot lvl4751|Fungi
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042592,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901363
Evalue1.87e-07
EggNOG OGsCOG0514@1|root,KOG0351@2759|Eukaryota,39XWQ@33154|Opisthokonta,3P10I@4751|Fungi,3RKKE@4890|Ascomycota,3ME62@451866|Taphrinomycotina
EC3.6.4.12
Descriptionhelicase superfamily c-terminal domain
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3421Gchil3421Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 1192852..1194207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3421.t2Gchil3421.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 1192852..1194207 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3421.t2.stop1Gchil3421.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 1192852..1192854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3421.t2.CDS1Gchil3421.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 1192852..1193293 -
Gchil3421.t2.CDS2Gchil3421.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 1193547..1193823 -
Gchil3421.t2.CDS3Gchil3421.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 1193934..1193937 -
Gchil3421.t2.CDS4Gchil3421.t2.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 1194064..1194207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3421.t2.exon1Gchil3421.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 1192852..1193293 -
Gchil3421.t2.exon2Gchil3421.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 1193547..1193823 -
Gchil3421.t2.exon3Gchil3421.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 1193934..1193937 -
Gchil3421.t2.exon4Gchil3421.t2.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 1194064..1194207 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3421.t2.intron1Gchil3421.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 1193294..1193546 -
Gchil3421.t2.intron2Gchil3421.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 1193824..1193933 -
Gchil3421.t2.intron3Gchil3421.t2.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 1193938..1194063 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3421.t2.start1Gchil3421.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 1194205..1194207 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3421.t2 ID=Gchil3421.t2|Name=Gchil3421.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=289bp
MEMGLRERNKQCVILLTRTLRKSIALQTLSRRGMFRLEMESLSKEVRTTE
RWENVFVIMPTGSANSLCVLLPIFMTRGVFSSILIVPLLSLAKEFEQRTM
DLDLITCTTFHAPRGEKEDLYILTPQQLRSESFLKLISSLVRKDIENYAD
VISTSYILLSSSPYDERPNLDLQLVVLQYHGGMGTEIKERMYGLWCTPRY
VRRKNDSFNAAKVVVLVCLCDFGAGIDAPNVSLVLQVGGSSSPKDYAKEA
GRAGRDGDGGLFLVLYSEAYADYFQYHVESVDKETHSE*
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spliced messenger RNA

>Gchil3421.t2 ID=Gchil3421.t2|Name=Gchil3421.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000168_pilon:1192852..1194207- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATGGGCCTGCGAGAACGAAACAAACAGTGTGTAATCCTGCTGAC
AAGAACGCTTCGAAAATCAATTGCTCTCCAAACACTCAGCCGGAGAGGCA
TGTTTCGTCTTGAAATGGAATCCCTTTCCAAAGAAGTCAGAACGACAGAG
AGGTGGGAAAATGTATTTGTTATCATGCCAACCGGATCGGCTAATTCACT
CTGTGTCTTGCTCCCAATCTTCATGACTCGCGGAGTTTTTTCATCCATTC
TAATCGTCCCGCTGCTATCTTTGGCAAAAGAGTTTGAACAGAGGACGATG
GACCTTGATCTGATAACATGTACGACCTTTCATGCTCCTCGTGGAGAGAA
AGAAGACCTGTACATTCTCACACCTCAACAATTGAGAAGCGAAAGTTTCC
TCAAACTCATTTCGTCTTTAGTCAGGAAAGATATTGAGAATTATGCAGAC
GTGATAAGTACCTCCTACATTCTGTTATCCTCCTCACCGTATGACGAACG
TCCTAACCTAGATCTGCAGCTGGTTGTGCTTCAATACCATGGAGGAATGG
GTACCGAAATTAAGGAGAGAATGTACGGTCTGTGGTGCACTCCTCGTTAC
GTTCGGCGAAAGAACGATTCGTTTAATGCAGCAAAAGTAGTTGTACTGGT
CTGTCTGTGTGACTTTGGAGCAGGAATTGATGCTCCAAATGTGAGCCTTG
TTCTCCAAGTTGGAGGCTCATCATCTCCCAAAGACTATGCAAAGGAGGCG
GGCCGCGCTGGTCGGGATGGTGATGGTGGCCTTTTTCTCGTTCTTTACTC
CGAAGCATATGCTGATTACTTTCAGTACCACGTAGAGAGTGTCGACAAGG
AAACACATTCCGAGTGA
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protein sequence of Gchil3421.t2

>Gchil3421.t2 ID=Gchil3421.t2|Name=Gchil3421.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=289bp
MEMGLRERNKQCVILLTRTLRKSIALQTLSRRGMFRLEMESLSKEVRTTE
RWENVFVIMPTGSANSLCVLLPIFMTRGVFSSILIVPLLSLAKEFEQRTM
DLDLITCTTFHAPRGEKEDLYILTPQQLRSESFLKLISSLVRKDIENYAD
VISTSYILLSSSPYDERPNLDLQLVVLQYHGGMGTEIKERMYGLWCTPRY
VRRKNDSFNAAKVVVLVCLCDFGAGIDAPNVSLVLQVGGSSSPKDYAKEA
GRAGRDGDGGLFLVLYSEAYADYFQYHVESVDKETHSE*
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mRNA from alignment at tig00000168_pilon:1192852..1194207-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3421.t2 ID=Gchil3421.t2|Name=Gchil3421.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000168_pilon:1192852..1194207- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGATGGGCCTGCGAGAACGAAACAAACAGTGTGTAATCCTGCTGAC
AAGAACGCTTCGAAAATCAATTGCTCTCCAAACACTCAGCCGGAGAGGCA
TGTTTCGTCTTGAAATGGAATCCCTTTCCAAAGAAGTCAGAACGGTAAGA
TGATATTCGAAAGCCAGAATGCCTTTGACTACGGTCAGAAGAAAGGCCCC
AAGAACATGTTGACTTCTATAATACCTGGCTGGCAATTCTCACTAACCTC
TCTCGTTGAAGATGATTCAGACAGGTATGAGAATATGGTAACGTCCTTCT
TGAAAAACCTGAAATCAATATTGACAGACCCATTGGCAACCTTCAAATCC
CAAACACAATACAATGTCACACCCACTGTCACAGAGAGGTGGGAAAATGT
ATTTGTTATCATGCCAACCGGATCGGCTAATTCACTCTGTGTCTTGCTCC
CAATCTTCATGACTCGCGGAGTTTTTTCATCCATTCTAATCGTCCCGCTG
CTATCTTTGGCAAAAGAGTTTGAACAGAGGACGATGGACCTTGATCTGAT
AACATGTACGACCTTTCATGCTCCTCGTGGAGAGAAAGAAGACCTGTACA
TTCTCACACCTCAACAATTGAGAAGCGAAAGTTTCCTCAAACTCATTTCG
TCTTTAGTCAGGTCAGGCTCTCTCGCTCGTGTTGTGGTAGATGAAGCGCA
TCTTACGACCACGTGGTCTAGTTTTCGTCAGCCGCTATGGGATATAAGAT
ATGCCTTGCTTTATGTGCCGTGCTGCGTCCCGAGAGTGTTCTTAAGTGCG
GCAGTTCCCCCTTAAGTTGGGGCCGGAAAAGGCATCTGATCAAGACTTTC
TTGTTTCCAGCCATGATGGGACTCACCTTCCATTCTTCCGAGTAATCATC
TACGTATTGCGAAGGAAAGATATTGAGAATTATGCAGACGTGATAAGTAC
CTCCTACATTCTGTTATCCTCCTCACCGTATGACGAACGTCCTAACCTAG
ATCTGCAGCTGGTTGTGCTTCAATACCATGGAGGAATGGGTACCGAAATT
AAGGAGAGAATGTACGGTCTGTGGTGCACTCCTCGTTACGTTCGGCGAAA
GAACGATTCGTTTAATGCAGCAAAAGTAGTTGTACTGGTCTGTCTGTGTG
ACTTTGGAGCAGGAATTGATGCTCCAAATGTGAGCCTTGTTCTCCAAGTT
GGAGGCTCATCATCTCCCAAAGACTATGCAAAGGAGGCGGGCCGCGCTGG
TCGGGATGGTGATGGTGGCCTTTTTCTCGTTCTTTACTCCGAAGCATATG
CTGATTACTTTCAGTACCACGTAGAGAGTGTCGACAAGGAAACACATTCC
GAGTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:1192852..1194207-

>Gchil3421.t2 ID=Gchil3421.t2|Name=Gchil3421.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000168_pilon:1192852..1194207- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGATGGGCCTGCGAGAACGAAACAAACAGTGTGTAATCCTGCTGAC
AAGAACGCTTCGAAAATCAATTGCTCTCCAAACACTCAGCCGGAGAGGCA
TGTTTCGTCTTGAAATGGAATCCCTTTCCAAAGAAGTCAGAACGACAGAG
AGGTGGGAAAATGTATTTGTTATCATGCCAACCGGATCGGCTAATTCACT
CTGTGTCTTGCTCCCAATCTTCATGACTCGCGGAGTTTTTTCATCCATTC
TAATCGTCCCGCTGCTATCTTTGGCAAAAGAGTTTGAACAGAGGACGATG
GACCTTGATCTGATAACATGTACGACCTTTCATGCTCCTCGTGGAGAGAA
AGAAGACCTGTACATTCTCACACCTCAACAATTGAGAAGCGAAAGTTTCC
TCAAACTCATTTCGTCTTTAGTCAGGAAAGATATTGAGAATTATGCAGAC
GTGATAAGTACCTCCTACATTCTGTTATCCTCCTCACCGTATGACGAACG
TCCTAACCTAGATCTGCAGCTGGTTGTGCTTCAATACCATGGAGGAATGG
GTACCGAAATTAAGGAGAGAATGTACGGTCTGTGGTGCACTCCTCGTTAC
GTTCGGCGAAAGAACGATTCGTTTAATGCAGCAAAAGTAGTTGTACTGGT
CTGTCTGTGTGACTTTGGAGCAGGAATTGATGCTCCAAATGTGAGCCTTG
TTCTCCAAGTTGGAGGCTCATCATCTCCCAAAGACTATGCAAAGGAGGCG
GGCCGCGCTGGTCGGGATGGTGATGGTGGCCTTTTTCTCGTTCTTTACTC
CGAAGCATATGCTGATTACTTTCAGTACCACGTAGAGAGTGTCGACAAGG
AAACACATTCCGAGTGA
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