Gchil3391.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3391.t1
Unique NameGchil3391.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:862680..863265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ26866
PFAMsTen1_2
Max annot lvl35493|Streptophyta
GOsGO:0000723,GO:0000781,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0006139,GO:0006259,GO:0006457,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010521,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0019827,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032200,GO:0032501,GO:0032502,GO:0034641,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044092,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048367,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051338,GO:0051348,GO:0051972,GO:0051974,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098727,GO:0098772,GO:1901360,GO:2000112,GO:2000113,GO:2000278,GO:2000279
Evalue1.02e-12
EggNOG OGs2BP4Y@1|root,2S1R3@2759|Eukaryota,37VJ9@33090|Viridiplantae,3GJNK@35493|Streptophyta
DescriptionCST complex subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3391Gchil3391Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 862680..863265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3391.t1Gchil3391.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 862680..863265 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3391.t1.start1Gchil3391.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 862680..862682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3391.t1.CDS1Gchil3391.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 862680..862795 +
Gchil3391.t1.CDS2Gchil3391.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 862874..863033 +
Gchil3391.t1.CDS3Gchil3391.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 863134..863265 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3391.t1.exon1Gchil3391.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 862680..862795 +
Gchil3391.t1.exon2Gchil3391.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 862874..863033 +
Gchil3391.t1.exon3Gchil3391.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 863134..863265 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3391.t1.intron1Gchil3391.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 862796..862873 +
Gchil3391.t1.intron2Gchil3391.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 863034..863133 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3391.t1.stop1Gchil3391.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 863263..863265 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3391.t1 ID=Gchil3391.t1|Name=Gchil3391.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=136bp
MAAAINMPDIKSGKLLQIDELDNWSPDERHGNAVRIMGRVKRVDFGRDVV
FLEYHGRELAVHTAEIQDPRIGLDHIGTMFMCLGELERFENELLLRARIV
KEMKGVDVNLYDRCLKIRKDFDKNVLDSTERKNDL*
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spliced messenger RNA

>Gchil3391.t1 ID=Gchil3391.t1|Name=Gchil3391.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000168_pilon:862680..863265+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGGCTATCAATATGCCTGACATTAAGAGCGGGAAACTTTTGCA
AATAGACGAGCTGGACAACTGGAGCCCAGACGAGCGTCATGGAAATGCCG
TGCGAATAATGGGAAGAGTAAAGCGCGTGGATTTCGGCAGGGATGTAGTC
TTTCTCGAATACCATGGAAGAGAACTCGCTGTACATACCGCTGAAATCCA
AGACCCTAGAATCGGATTGGACCACATCGGAACAATGTTTATGTGTCTGG
GAGAACTGGAAAGATTTGAAAATGAGTTGCTCCTCAGAGCAAGGATTGTG
AAAGAAATGAAAGGTGTAGATGTAAATCTGTATGACAGATGCCTGAAGAT
CAGAAAGGATTTCGACAAGAACGTCTTGGACTCGACCGAACGAAAGAATG
ATCTGTGA
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protein sequence of Gchil3391.t1

>Gchil3391.t1 ID=Gchil3391.t1|Name=Gchil3391.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=136bp
MAAAINMPDIKSGKLLQIDELDNWSPDERHGNAVRIMGRVKRVDFGRDVV
FLEYHGRELAVHTAEIQDPRIGLDHIGTMFMCLGELERFENELLLRARIV
KEMKGVDVNLYDRCLKIRKDFDKNVLDSTERKNDL*
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mRNA from alignment at tig00000168_pilon:862680..863265+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3391.t1 ID=Gchil3391.t1|Name=Gchil3391.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=586bp|location=Sequence derived from alignment at tig00000168_pilon:862680..863265+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCGGCTATCAATATGCCTGACATTAAGAGCGGGAAACTTTTGCA
AATAGACGAGCTGGACAACTGGAGCCCAGACGAGCGTCATGGAAATGCCG
TGCGAATAATGGGAAGGTGTGTCATCAACAACATAAATTGCTGCCAACCC
TTGAAGCACATCTAACTTTATGAACGATTCTTACCTTTTGAAAGAGTAAA
GCGCGTGGATTTCGGCAGGGATGTAGTCTTTCTCGAATACCATGGAAGAG
AACTCGCTGTACATACCGCTGAAATCCAAGACCCTAGAATCGGATTGGAC
CACATCGGAACAATGTTTATGTGTCTGGGAGAACTGGAAAGATTTGAAAA
TGAGGTATGTAGGAAAGAAACGCGATTTGTGTATCAAGGGGATTGTGTAG
GTATATTTGACGTTAACCATGTCTGACAATTTGCATCCTCTTGTTTGGAA
ATAGTTGCTCCTCAGAGCAAGGATTGTGAAAGAAATGAAAGGTGTAGATG
TAAATCTGTATGACAGATGCCTGAAGATCAGAAAGGATTTCGACAAGAAC
GTCTTGGACTCGACCGAACGAAAGAATGATCTGTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:862680..863265+

>Gchil3391.t1 ID=Gchil3391.t1|Name=Gchil3391.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000168_pilon:862680..863265+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCGGCTATCAATATGCCTGACATTAAGAGCGGGAAACTTTTGCA
AATAGACGAGCTGGACAACTGGAGCCCAGACGAGCGTCATGGAAATGCCG
TGCGAATAATGGGAAGAGTAAAGCGCGTGGATTTCGGCAGGGATGTAGTC
TTTCTCGAATACCATGGAAGAGAACTCGCTGTACATACCGCTGAAATCCA
AGACCCTAGAATCGGATTGGACCACATCGGAACAATGTTTATGTGTCTGG
GAGAACTGGAAAGATTTGAAAATGAGTTGCTCCTCAGAGCAAGGATTGTG
AAAGAAATGAAAGGTGTAGATGTAAATCTGTATGACAGATGCCTGAAGAT
CAGAAAGGATTTCGACAAGAACGTCTTGGACTCGACCGAACGAAAGAATG
ATCTGTGA
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