Gchil3403.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3403.t1
Unique NameGchil3403.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:997949..998802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40148.OGLUM03G02370.1
PFAMsGATA
Max annot lvl35493|Streptophyta
Evalue0.00019
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,384IC@33090|Viridiplantae,3GZBZ@35493|Streptophyta,3M76P@4447|Liliopsida,3IJ54@38820|Poales
Descriptionzinc finger binding to DNA consensus sequence [AT]GATA[AG]
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3403Gchil3403Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 997949..998802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3403.t1Gchil3403.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 997949..998802 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3403.t1.start1Gchil3403.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 997949..997951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3403.t1.CDS1Gchil3403.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 997949..998165 +
Gchil3403.t1.CDS2Gchil3403.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 998285..998802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3403.t1.exon1Gchil3403.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 997949..998165 +
Gchil3403.t1.exon2Gchil3403.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 998285..998802 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3403.t1.intron1Gchil3403.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 998166..998284 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3403.t1.stop1Gchil3403.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 998800..998802 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3403.t1 ID=Gchil3403.t1|Name=Gchil3403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MSRHCPPLPPSPPLSPSDSRYLSRARPRGDDGRFVPRAEEHHPADARDRK
VCGWCRRTQTSQWRVGPTTGSLEMGTLCNACGINYRRALQKAPDTMLDLD
QLAQQQGTRLSIQKALKRQRKLSPTLSPALSPALTQFKPNRTAERRHSSL
NMLLSSDTSSPTWHAPPAPVSVPHSNSAPLPPPPPPPLPSMHSYGRARTS
PALPLPSSALSPRHAHGWASSSRHRRADRLPPFQDFIGRLPSRE*
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spliced messenger RNA

>Gchil3403.t1 ID=Gchil3403.t1|Name=Gchil3403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000168_pilon:997949..998802+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgagtcgccactgtccgccgctgccgccgtcgccgccgctttcgccctc
cgactcacgctacctcagtcgcgcccgtccgcgcggcgacgacggtcgtt
TCGTTCCTCGCGCCGAGGAGCATCATCCCGCCGATGCGCGTGACCGCAAA
GTGTGCGGCTGGTGTCGTCGCACACAGACGTCGCAGTGGCGTGTGGGACC
CACAACTGGATCACTCGAGATGGGAACGCTGTGCAATGCATGTGGCATCA
ACTATCGCCGCGCGTTGCAGAAAGCGCCCGATACCATGCTTGACCTCGAT
CAGCTTGCCCAACAACAAGGCACCCGGCTGTCCATTCAAAAGGCGCTCAA
GCGCCAACGCAAGTTATCGCCGACGCTCTCACCCGCCTTGTCGCCCGCTC
TCACCCAGTTCAAACCCAATCGAACCGCCGAGCGGCGGCACTCATCGCTC
AACATGCTGCTGTCGTCTGACACATCGTCACCGACGTGGCACGCGCCTCC
CGCACCCGTGTCCGTGCCGCACTCCAACTCTGcgccgttgccgccgccac
ctccgccgccgcTCCCTAGTATGCACTCGTACGGTCGTGCGCGCACGTCG
CCCGCGCTGCCACTGCCCTCCTCCGCGCTCTCACCGCGCCACGCCCACGG
CTGGGCTTCCAGCAGTAGACATCGGAGGGCCGATCGATTACCGCCGTTTC
AGGACTTTATTGGGCGTTTGCCATCACGCGAGTGA
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protein sequence of Gchil3403.t1

>Gchil3403.t1 ID=Gchil3403.t1|Name=Gchil3403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MSRHCPPLPPSPPLSPSDSRYLSRARPRGDDGRFVPRAEEHHPADARDRK
VCGWCRRTQTSQWRVGPTTGSLEMGTLCNACGINYRRALQKAPDTMLDLD
QLAQQQGTRLSIQKALKRQRKLSPTLSPALSPALTQFKPNRTAERRHSSL
NMLLSSDTSSPTWHAPPAPVSVPHSNSAPLPPPPPPPLPSMHSYGRARTS
PALPLPSSALSPRHAHGWASSSRHRRADRLPPFQDFIGRLPSRE*
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mRNA from alignment at tig00000168_pilon:997949..998802+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3403.t1 ID=Gchil3403.t1|Name=Gchil3403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=854bp|location=Sequence derived from alignment at tig00000168_pilon:997949..998802+ (Gracilaria chilensis NLEC103_M9 male)
atgagtcgccactgtccgccgctgccgccgtcgccgccgctttcgccctc
cgactcacgctacctcagtcgcgcccgtccgcgcggcgacgacggtcgtt
TCGTTCCTCGCGCCGAGGAGCATCATCCCGCCGATGCGCGTGACCGCAAA
GTGTGCGGCTGGTGTCGTCGCACACAGACGTCGCAGTGGCGTGTGGGACC
CACAACTGGATCACTCGGTAAGTAACTTGTACAACATGCAACATCCCTCC
AtcccctttcttcttcccctttcttcttcccctttcccctcttcTTTGCG
TCCCTAACCGTGCTTGTTCTCGCTGCCACTCTGCAGAGATGGGAACGCTG
TGCAATGCATGTGGCATCAACTATCGCCGCGCGTTGCAGAAAGCGCCCGA
TACCATGCTTGACCTCGATCAGCTTGCCCAACAACAAGGCACCCGGCTGT
CCATTCAAAAGGCGCTCAAGCGCCAACGCAAGTTATCGCCGACGCTCTCA
CCCGCCTTGTCGCCCGCTCTCACCCAGTTCAAACCCAATCGAACCGCCGA
GCGGCGGCACTCATCGCTCAACATGCTGCTGTCGTCTGACACATCGTCAC
CGACGTGGCACGCGCCTCCCGCACCCGTGTCCGTGCCGCACTCCAACTCT
GcgccgttgccgccgccacctccgccgccgcTCCCTAGTATGCACTCGTA
CGGTCGTGCGCGCACGTCGCCCGCGCTGCCACTGCCCTCCTCCGCGCTCT
CACCGCGCCACGCCCACGGCTGGGCTTCCAGCAGTAGACATCGGAGGGCC
GATCGATTACCGCCGTTTCAGGACTTTATTGGGCGTTTGCCATCACGCGA
GTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:997949..998802+

>Gchil3403.t1 ID=Gchil3403.t1|Name=Gchil3403.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000168_pilon:997949..998802+ (Gracilaria chilensis NLEC103_M9 male)
atgagtcgccactgtccgccgctgccgccgtcgccgccgctttcgccctc
cgactcacgctacctcagtcgcgcccgtccgcgcggcgacgacggtcgtt
TCGTTCCTCGCGCCGAGGAGCATCATCCCGCCGATGCGCGTGACCGCAAA
GTGTGCGGCTGGTGTCGTCGCACACAGACGTCGCAGTGGCGTGTGGGACC
CACAACTGGATCACTCGAGATGGGAACGCTGTGCAATGCATGTGGCATCA
ACTATCGCCGCGCGTTGCAGAAAGCGCCCGATACCATGCTTGACCTCGAT
CAGCTTGCCCAACAACAAGGCACCCGGCTGTCCATTCAAAAGGCGCTCAA
GCGCCAACGCAAGTTATCGCCGACGCTCTCACCCGCCTTGTCGCCCGCTC
TCACCCAGTTCAAACCCAATCGAACCGCCGAGCGGCGGCACTCATCGCTC
AACATGCTGCTGTCGTCTGACACATCGTCACCGACGTGGCACGCGCCTCC
CGCACCCGTGTCCGTGCCGCACTCCAACTCTGcgccgttgccgccgccac
ctccgccgccgcTCCCTAGTATGCACTCGTACGGTCGTGCGCGCACGTCG
CCCGCGCTGCCACTGCCCTCCTCCGCGCTCTCACCGCGCCACGCCCACGG
CTGGGCTTCCAGCAGTAGACATCGGAGGGCCGATCGATTACCGCCGTTTC
AGGACTTTATTGGGCGTTTGCCATCACGCGAGTGA
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