Gchil3354.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3354.t1
Unique NameGchil3354.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:403809..404827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708003.1
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08910,ko:K08911
KEGG Pathwayko00196,map00196
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009521,GO:0009522,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009782,GO:0009941,GO:0009987,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0046983,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:0098796,GO:1901363
Evalue4.81e-47
EggNOG OGs2BTIX@1|root,2S212@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3354Gchil3354Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 403809..404827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3354.t1Gchil3354.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 403809..404827 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3354.t1.start1Gchil3354.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 403809..403811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3354.t1.CDS1Gchil3354.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 403809..403992 +
Gchil3354.t1.CDS2Gchil3354.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 404065..404527 +
Gchil3354.t1.CDS3Gchil3354.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 404683..404827 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3354.t1.exon1Gchil3354.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 403809..403992 +
Gchil3354.t1.exon2Gchil3354.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 404065..404527 +
Gchil3354.t1.exon3Gchil3354.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 404683..404827 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3354.t1.intron1Gchil3354.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 403993..404064 +
Gchil3354.t1.intron2Gchil3354.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 404528..404682 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3354.t1.stop1Gchil3354.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 404825..404827 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3354.t1 ID=Gchil3354.t1|Name=Gchil3354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp
MAFVSSFVPVFAGARAAFGARVCAMPRHSSPAVVMAEKSPSVPFMDAPSA
LTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSEVYQ
FPWYTDYPHLVINRHNWAVSNGSLSQILLWCSFFEIMTLPAVTQMVTGKS
DRSPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAISN
QNLVEQLTSGNILPKFKIVAFGNLPGTNSLTHALPSPRTGKTHEIQPVNA
VQANVVNVATNLT*
back to top

spliced messenger RNA

>Gchil3354.t1 ID=Gchil3354.t1|Name=Gchil3354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000168_pilon:403809..404827+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTTGTTTCATCTTTCGTCCCGGTGTTCGCTGGCGCTCGCGCAGC
GTTCGGCGCGCGCGTTTGTGCCATGCCAAGGCATAGTTCACCTGCCGTCG
TTATGGCCGAGAAGAGCCCGTCCGTCCCCTTCATGGATGCTCCATCCGCC
CTCACCCCGGACATGCCCGGCTACGTTGGTTTTGACCCGTTTAACATCTC
TGCATACCTCAACGTCAAGTGGCTACAAGAAGCCGAAATCAAGCACGCAC
GCATTTGTCTTCTTGCCATTCTAGGTTTCATCGTCTCTGAAGTTTACCAG
TTTCCATGGTACACGGACTACCCCCACCTCGTTATCAACCGCCATAACTG
GGCTGTTTCCAATGGCTCGCTTTCTCAAATACTTCTGTGGTGCTCATTCT
TTGAGATTATGACTCTGCCAGCTGTCACTCAGATGGTCACTGGAAAGAGT
GATAGATCTCCGGGAGATTTCAAGTTTGATCCCTTGGGTCTTGCCAAGGA
CCCGGCAAAGATGGCTGTATACAAGGTCAATGAGATTAAGAACGGACGTC
TGGCCATGATTGCTGTCTCCGGTGCCATCCATCACGCAGCTATTAGTAAC
CAGAACCTTGTTGAGCAGCTCACCTCTGGAAATATCCTGCCCAAATTTAA
AATCGTAGCATTTGGCAACCTTCCTGGGACTAATTCTTTGACCCATGCAC
TGCCATCGCCAAGAACCGGCAAAACACATGAAATTCAGCCAGTAAACGCA
GTTCAAGCCAACGTAGTTAACGTCGCTACCAACCTTACCTAA
back to top

protein sequence of Gchil3354.t1

>Gchil3354.t1 ID=Gchil3354.t1|Name=Gchil3354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=264bp
MAFVSSFVPVFAGARAAFGARVCAMPRHSSPAVVMAEKSPSVPFMDAPSA
LTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSEVYQ
FPWYTDYPHLVINRHNWAVSNGSLSQILLWCSFFEIMTLPAVTQMVTGKS
DRSPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAISN
QNLVEQLTSGNILPKFKIVAFGNLPGTNSLTHALPSPRTGKTHEIQPVNA
VQANVVNVATNLT*
back to top

mRNA from alignment at tig00000168_pilon:403809..404827+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3354.t1 ID=Gchil3354.t1|Name=Gchil3354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1019bp|location=Sequence derived from alignment at tig00000168_pilon:403809..404827+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTTGTTTCATCTTTCGTCCCGGTGTTCGCTGGCGCTCGCGCAGC
GTTCGGCGCGCGCGTTTGTGCCATGCCAAGGCATAGTTCACCTGCCGTCG
TTATGGCCGAGAAGAGCCCGTCCGTCCCCTTCATGGATGCTCCATCCGCC
CTCACCCCGGACATGCCCGGCTACGTTGGTTTTGGTAAGTTTCCCCCTTC
TAAGCCCCAATGGGCATCATTTACGCAAATTTGTCAAGCTAACCACATCA
ATGTAGACCCGTTTAACATCTCTGCATACCTCAACGTCAAGTGGCTACAA
GAAGCCGAAATCAAGCACGCACGCATTTGTCTTCTTGCCATTCTAGGTTT
CATCGTCTCTGAAGTTTACCAGTTTCCATGGTACACGGACTACCCCCACC
TCGTTATCAACCGCCATAACTGGGCTGTTTCCAATGGCTCGCTTTCTCAA
ATACTTCTGTGGTGCTCATTCTTTGAGATTATGACTCTGCCAGCTGTCAC
TCAGATGGTCACTGGAAAGAGTGATAGATCTCCGGGAGATTTCAAGTTTG
ATCCCTTGGGTCTTGCCAAGGACCCGGCAAAGATGGCTGTATACAAGGTC
AATGAGATTAAGAACGGACGTCTGGCCATGATTGCTGTCTCCGGTGCCAT
CCATCACGCAGCTATTAGTAACCAGAACCTTGTTGAGCAGCTCACCTCTG
GAAATATCCTGCCCAAATTGTAAGTTAAGTTTGGCGAATGAATTCGTGCA
CCACTTTTTGTCTGTACTTTGCAGTAAAAGCTTTTTCTTTGAACATCATT
TCCACCATCCTTCCCGCGAGATGTATCGGGAACCTAACTCTGGGTTTAAC
TTCCTGACCTGTTCATCTGAGAAGTAAAATCGTAGCATTTGGCAACCTTC
CTGGGACTAATTCTTTGACCCATGCACTGCCATCGCCAAGAACCGGCAAA
ACACATGAAATTCAGCCAGTAAACGCAGTTCAAGCCAACGTAGTTAACGT
CGCTACCAACCTTACCTAA
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:403809..404827+

>Gchil3354.t1 ID=Gchil3354.t1|Name=Gchil3354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000168_pilon:403809..404827+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTTGTTTCATCTTTCGTCCCGGTGTTCGCTGGCGCTCGCGCAGC
GTTCGGCGCGCGCGTTTGTGCCATGCCAAGGCATAGTTCACCTGCCGTCG
TTATGGCCGAGAAGAGCCCGTCCGTCCCCTTCATGGATGCTCCATCCGCC
CTCACCCCGGACATGCCCGGCTACGTTGGTTTTGACCCGTTTAACATCTC
TGCATACCTCAACGTCAAGTGGCTACAAGAAGCCGAAATCAAGCACGCAC
GCATTTGTCTTCTTGCCATTCTAGGTTTCATCGTCTCTGAAGTTTACCAG
TTTCCATGGTACACGGACTACCCCCACCTCGTTATCAACCGCCATAACTG
GGCTGTTTCCAATGGCTCGCTTTCTCAAATACTTCTGTGGTGCTCATTCT
TTGAGATTATGACTCTGCCAGCTGTCACTCAGATGGTCACTGGAAAGAGT
GATAGATCTCCGGGAGATTTCAAGTTTGATCCCTTGGGTCTTGCCAAGGA
CCCGGCAAAGATGGCTGTATACAAGGTCAATGAGATTAAGAACGGACGTC
TGGCCATGATTGCTGTCTCCGGTGCCATCCATCACGCAGCTATTAGTAAC
CAGAACCTTGTTGAGCAGCTCACCTCTGGAAATATCCTGCCCAAATTTAA
AATCGTAGCATTTGGCAACCTTCCTGGGACTAATTCTTTGACCCATGCAC
TGCCATCGCCAAGAACCGGCAAAACACATGAAATTCAGCCAGTAAACGCA
GTTCAAGCCAACGTAGTTAACGTCGCTACCAACCTTACCTAA
back to top