Gchil3348.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3348.t1
Unique NameGchil3348.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:309510..310751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_01875T0
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
Evalue1.11e-139
EggNOG OGsCOG0436@1|root,KOG0257@2759|Eukaryota
Descriptiontransferase activity, transferring nitrogenous groups
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3348Gchil3348Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 309510..310751 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3348.t1.start1Gchil3348.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 309510..309512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3348.t1.CDS1Gchil3348.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 309510..310751 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3348.t1.exon1Gchil3348.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 309510..310751 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3348.t1.stop1Gchil3348.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 310749..310751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3348.t1Gchil3348.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 309510..310751 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3348.t1 ID=Gchil3348.t1|Name=Gchil3348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MGSISNCRDPLADRLGRLGTETAYAVALEAGQFKATGKTVYPFHIGDLNF
RTPKVVVDACKQALDDGFTGYCPAAGIPSLRAALADHYNQVFGLEYSASN
VSIQSGGKPGIGKFLMCVCNDGDEVLFPSPGYPIYESMARFLNTKPVPYC
YKETENGFELDIADLEAKVTSRTKAIFLNNFQNPMGVAHTLHELEDIAAL
CIEKDLLVFSDDPYYQIIFSDFPQTDFVHIAKLPGMLSRTVCDYTFSKSF
AMTGWRLGGVLGPKWLIDQVTKINTNDEACTTHFVQVAGVTALTDPAAAK
FTKDMVSDLEERRDVLYSVLNDVPGFKALKPKATFYMMCNVTEAMSKMGV
QDIEEFRSEVLQNTGVSFCTRAHFGTPIPGETEKYVRFAFSGVNIDQIKA
AGKALKPYLSKFF*
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spliced messenger RNA

>Gchil3348.t1 ID=Gchil3348.t1|Name=Gchil3348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000168_pilon:309510..310751+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATCTATTTCTAACTGCCGTGACCCTTTGGCGGACCGCCTTGGTCG
CTTGGGTACTGAGACCGCCTACGCTGTCGCGCTTGAGGCCGGACAGTTCA
AGGCCACTGGTAAGACCGTCTACCCCTTCCACATTGGAGACCTTAACTTC
CGCACACCGAAGGTGGTCGTCGATGCCTGCAAGCAGGCTTTGGATGATGG
CTTCACTGGCTACTGCCCCGCTGCCGGAATTCCGTCTCTTCGCGCCGCCC
TTGCCGATCACTACAACCAGGTATTCGGCCTTGAGTACTCTGCCTCCAAT
GTGTCCATTCAGAGTGGTGGAAAGCCTGGAATTGGAAAATTCCTCATGTG
CGTATGCAATGACGGTGATGAAGTACTGTTCCCTAGCCCTGGTTATCCCA
TCTACGAAAGTATGGCTCGCTTCTTGAACACCAAGCCCGTGCCCTACTGC
TACAAGGAAACTGAAAACGGATTTGAGCTTGATATCGCCGACCTGGAGGC
AAAGGTAACCAGCCGCACTAAAGCTATCTTCCTCAACAACTTCCAGAACC
CAATGGGTGTGGCGCACACCCTTCACGAGCTTGAGGACATCGCCGCCCTT
TGCATCGAGAAGGACCTACTCGTGTTTTCTGATGACCCCTACTACCAGAT
CATCTTCTCGGACTTTCCTCAGACTGACTTTGTTCACATTGCTAAACTGC
CTGGCATGCTTTCTCGTACCGTTTGTGACTACACGTTCTCCAAGAGTTTT
GCCATGACTGGATGGCGCCTTGGAGGTGTGCTTGGCCCCAAATGGCTCAT
TGATCAAGTGACCAAGATCAACACCAATGATGAAGCCTGCACCACTCACT
TTGTTCAAGTGGCAGGCGTGACTGCGCTCACGGACCCAGCTGCTGCCAAG
TTCACAAAGGATATGGTGAGCGATCTCGAAGAACGCCGTGACGTGCTGTA
CAGCGTTTTAAACGATGTGCCCGGTTTCAAGGCCCTCAAGCCTAAGGCAA
CCTTCTACATGATGTGCAATGTAACAGAAGCTATGAGCAAGATGGGCGTG
CAAGACATTGAAGAATTCAGATCAGAAGTGCTACAAAACACCGGAGTGTC
GTTCTGTACGAGAGCACACTTTGGCACTCCAATCCCTGGAGAGACGGAGA
AGTACGTTCGATTTGCGTTCTCCGGTGTGAACATTGATCAAATCAAGGCA
GCTGGAAAAGCACTTAAGCCATATCTCTCGAAATTCTTTTAG
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protein sequence of Gchil3348.t1

>Gchil3348.t1 ID=Gchil3348.t1|Name=Gchil3348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MGSISNCRDPLADRLGRLGTETAYAVALEAGQFKATGKTVYPFHIGDLNF
RTPKVVVDACKQALDDGFTGYCPAAGIPSLRAALADHYNQVFGLEYSASN
VSIQSGGKPGIGKFLMCVCNDGDEVLFPSPGYPIYESMARFLNTKPVPYC
YKETENGFELDIADLEAKVTSRTKAIFLNNFQNPMGVAHTLHELEDIAAL
CIEKDLLVFSDDPYYQIIFSDFPQTDFVHIAKLPGMLSRTVCDYTFSKSF
AMTGWRLGGVLGPKWLIDQVTKINTNDEACTTHFVQVAGVTALTDPAAAK
FTKDMVSDLEERRDVLYSVLNDVPGFKALKPKATFYMMCNVTEAMSKMGV
QDIEEFRSEVLQNTGVSFCTRAHFGTPIPGETEKYVRFAFSGVNIDQIKA
AGKALKPYLSKFF*
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mRNA from alignment at tig00000168_pilon:309510..310751+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3348.t1 ID=Gchil3348.t1|Name=Gchil3348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000168_pilon:309510..310751+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATCTATTTCTAACTGCCGTGACCCTTTGGCGGACCGCCTTGGTCG
CTTGGGTACTGAGACCGCCTACGCTGTCGCGCTTGAGGCCGGACAGTTCA
AGGCCACTGGTAAGACCGTCTACCCCTTCCACATTGGAGACCTTAACTTC
CGCACACCGAAGGTGGTCGTCGATGCCTGCAAGCAGGCTTTGGATGATGG
CTTCACTGGCTACTGCCCCGCTGCCGGAATTCCGTCTCTTCGCGCCGCCC
TTGCCGATCACTACAACCAGGTATTCGGCCTTGAGTACTCTGCCTCCAAT
GTGTCCATTCAGAGTGGTGGAAAGCCTGGAATTGGAAAATTCCTCATGTG
CGTATGCAATGACGGTGATGAAGTACTGTTCCCTAGCCCTGGTTATCCCA
TCTACGAAAGTATGGCTCGCTTCTTGAACACCAAGCCCGTGCCCTACTGC
TACAAGGAAACTGAAAACGGATTTGAGCTTGATATCGCCGACCTGGAGGC
AAAGGTAACCAGCCGCACTAAAGCTATCTTCCTCAACAACTTCCAGAACC
CAATGGGTGTGGCGCACACCCTTCACGAGCTTGAGGACATCGCCGCCCTT
TGCATCGAGAAGGACCTACTCGTGTTTTCTGATGACCCCTACTACCAGAT
CATCTTCTCGGACTTTCCTCAGACTGACTTTGTTCACATTGCTAAACTGC
CTGGCATGCTTTCTCGTACCGTTTGTGACTACACGTTCTCCAAGAGTTTT
GCCATGACTGGATGGCGCCTTGGAGGTGTGCTTGGCCCCAAATGGCTCAT
TGATCAAGTGACCAAGATCAACACCAATGATGAAGCCTGCACCACTCACT
TTGTTCAAGTGGCAGGCGTGACTGCGCTCACGGACCCAGCTGCTGCCAAG
TTCACAAAGGATATGGTGAGCGATCTCGAAGAACGCCGTGACGTGCTGTA
CAGCGTTTTAAACGATGTGCCCGGTTTCAAGGCCCTCAAGCCTAAGGCAA
CCTTCTACATGATGTGCAATGTAACAGAAGCTATGAGCAAGATGGGCGTG
CAAGACATTGAAGAATTCAGATCAGAAGTGCTACAAAACACCGGAGTGTC
GTTCTGTACGAGAGCACACTTTGGCACTCCAATCCCTGGAGAGACGGAGA
AGTACGTTCGATTTGCGTTCTCCGGTGTGAACATTGATCAAATCAAGGCA
GCTGGAAAAGCACTTAAGCCATATCTCTCGAAATTCTTTTAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:309510..310751+

>Gchil3348.t1 ID=Gchil3348.t1|Name=Gchil3348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000168_pilon:309510..310751+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATCTATTTCTAACTGCCGTGACCCTTTGGCGGACCGCCTTGGTCG
CTTGGGTACTGAGACCGCCTACGCTGTCGCGCTTGAGGCCGGACAGTTCA
AGGCCACTGGTAAGACCGTCTACCCCTTCCACATTGGAGACCTTAACTTC
CGCACACCGAAGGTGGTCGTCGATGCCTGCAAGCAGGCTTTGGATGATGG
CTTCACTGGCTACTGCCCCGCTGCCGGAATTCCGTCTCTTCGCGCCGCCC
TTGCCGATCACTACAACCAGGTATTCGGCCTTGAGTACTCTGCCTCCAAT
GTGTCCATTCAGAGTGGTGGAAAGCCTGGAATTGGAAAATTCCTCATGTG
CGTATGCAATGACGGTGATGAAGTACTGTTCCCTAGCCCTGGTTATCCCA
TCTACGAAAGTATGGCTCGCTTCTTGAACACCAAGCCCGTGCCCTACTGC
TACAAGGAAACTGAAAACGGATTTGAGCTTGATATCGCCGACCTGGAGGC
AAAGGTAACCAGCCGCACTAAAGCTATCTTCCTCAACAACTTCCAGAACC
CAATGGGTGTGGCGCACACCCTTCACGAGCTTGAGGACATCGCCGCCCTT
TGCATCGAGAAGGACCTACTCGTGTTTTCTGATGACCCCTACTACCAGAT
CATCTTCTCGGACTTTCCTCAGACTGACTTTGTTCACATTGCTAAACTGC
CTGGCATGCTTTCTCGTACCGTTTGTGACTACACGTTCTCCAAGAGTTTT
GCCATGACTGGATGGCGCCTTGGAGGTGTGCTTGGCCCCAAATGGCTCAT
TGATCAAGTGACCAAGATCAACACCAATGATGAAGCCTGCACCACTCACT
TTGTTCAAGTGGCAGGCGTGACTGCGCTCACGGACCCAGCTGCTGCCAAG
TTCACAAAGGATATGGTGAGCGATCTCGAAGAACGCCGTGACGTGCTGTA
CAGCGTTTTAAACGATGTGCCCGGTTTCAAGGCCCTCAAGCCTAAGGCAA
CCTTCTACATGATGTGCAATGTAACAGAAGCTATGAGCAAGATGGGCGTG
CAAGACATTGAAGAATTCAGATCAGAAGTGCTACAAAACACCGGAGTGTC
GTTCTGTACGAGAGCACACTTTGGCACTCCAATCCCTGGAGAGACGGAGA
AGTACGTTCGATTTGCGTTCTCCGGTGTGAACATTGATCAAATCAAGGCA
GCTGGAAAAGCACTTAAGCCATATCTCTCGAAATTCTTTTAG
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