Gchil3329.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3329.t1
Unique NameGchil3329.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:203781..204221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog907348.TresaDRAFT_0491
PFAMsHSP20
Max annot lvl203691|Spirochaetes
KEGG koko:K06335,ko:K13993
KEGG Pathwayko04141,map04141
Evalue7.82e-10
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,2J88K@203691|Spirochaetes
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3329Gchil3329Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 203781..204221 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3329.t1.start1Gchil3329.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 203781..203783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3329.t1.CDS1Gchil3329.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 203781..204221 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3329.t1.exon1Gchil3329.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 203781..204221 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3329.t1.stop1Gchil3329.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 204219..204221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3329.t1Gchil3329.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 203781..204221 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3329.t1 ID=Gchil3329.t1|Name=Gchil3329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=147bp
MVMYITPFDIPTFTLVELGPKLQRKTRQTATHVKPAVFTKQTDAGEKILQ
IDLPGVERKHVSVEMNGRKLIVSGKRYKSVGHTTLGPQNEAKTDKQDTGA
IVYRRAFELGRDVDLNAVRVGSLEDGVLTLLLPRKAQAQPRKIVIE*
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spliced messenger RNA

>Gchil3329.t1 ID=Gchil3329.t1|Name=Gchil3329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000168_pilon:203781..204221+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATGTACATCACCCCGTTCGATATTCCAACGTTCACTTTGGTAGA
GCTGGGCCCTAAACTCCAGCGCAAAACGAGGCAAACAGCAACTCATGTGA
AGCCGGCAGTATTTACGAAACAAACAGATGCAGGAGAGAAAATTTTGCAG
ATAGATTTACCAGGTGTTGAAAGAAAACATGTTTCTGTGGAGATGAACGG
TCGCAAACTAATCGTATCTGGCAAAAGGTACAAATCTGTAGGTCATACCA
CTTTGGGGCCTCAGAATGAAGCTAAAACCGATAAACAAGACACTGGTGCC
ATTGTGTACAGAAGGGCTTTTGAACTTGGGCGCGATGTCGATCTTAACGC
TGTCAGAGTTGGAAGCCTTGAGGATGGAGTTTTGACTCTTCTGCTGCCAA
GAAAAGCGCAAGCACAGCCGAGAAAAATCGTGATCGAGTAA
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protein sequence of Gchil3329.t1

>Gchil3329.t1 ID=Gchil3329.t1|Name=Gchil3329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=147bp
MVMYITPFDIPTFTLVELGPKLQRKTRQTATHVKPAVFTKQTDAGEKILQ
IDLPGVERKHVSVEMNGRKLIVSGKRYKSVGHTTLGPQNEAKTDKQDTGA
IVYRRAFELGRDVDLNAVRVGSLEDGVLTLLLPRKAQAQPRKIVIE*
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mRNA from alignment at tig00000168_pilon:203781..204221+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3329.t1 ID=Gchil3329.t1|Name=Gchil3329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000168_pilon:203781..204221+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATGTACATCACCCCGTTCGATATTCCAACGTTCACTTTGGTAGA
GCTGGGCCCTAAACTCCAGCGCAAAACGAGGCAAACAGCAACTCATGTGA
AGCCGGCAGTATTTACGAAACAAACAGATGCAGGAGAGAAAATTTTGCAG
ATAGATTTACCAGGTGTTGAAAGAAAACATGTTTCTGTGGAGATGAACGG
TCGCAAACTAATCGTATCTGGCAAAAGGTACAAATCTGTAGGTCATACCA
CTTTGGGGCCTCAGAATGAAGCTAAAACCGATAAACAAGACACTGGTGCC
ATTGTGTACAGAAGGGCTTTTGAACTTGGGCGCGATGTCGATCTTAACGC
TGTCAGAGTTGGAAGCCTTGAGGATGGAGTTTTGACTCTTCTGCTGCCAA
GAAAAGCGCAAGCACAGCCGAGAAAAATCGTGATCGAGTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:203781..204221+

>Gchil3329.t1 ID=Gchil3329.t1|Name=Gchil3329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000168_pilon:203781..204221+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATGTACATCACCCCGTTCGATATTCCAACGTTCACTTTGGTAGA
GCTGGGCCCTAAACTCCAGCGCAAAACGAGGCAAACAGCAACTCATGTGA
AGCCGGCAGTATTTACGAAACAAACAGATGCAGGAGAGAAAATTTTGCAG
ATAGATTTACCAGGTGTTGAAAGAAAACATGTTTCTGTGGAGATGAACGG
TCGCAAACTAATCGTATCTGGCAAAAGGTACAAATCTGTAGGTCATACCA
CTTTGGGGCCTCAGAATGAAGCTAAAACCGATAAACAAGACACTGGTGCC
ATTGTGTACAGAAGGGCTTTTGAACTTGGGCGCGATGTCGATCTTAACGC
TGTCAGAGTTGGAAGCCTTGAGGATGGAGTTTTGACTCTTCTGCTGCCAA
GAAAAGCGCAAGCACAGCCGAGAAAAATCGTGATCGAGTAA
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