Gchil3334.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil3334.t1
Unique Name	Gchil3334.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	231

Homology

[Close]

BLAST of Gchil3334.t1 vs. uniprot
Match: R7QMF4_CHOCR (PBPb domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMF4_CHOCR)

HSP 1 Score: 142 bits (358), Expect = 1.080e-35
Identity = 73/170 (42.94%), Postives = 108/170 (63.53%), Query Frame = 0

Query:    1 MVRGGASQDFWNKIVNTSFNRDNC-KWDRRSVGTTVSDLEEGFRYLSERKVDYFYSLRGSVIVRASINCEEYVPVGAPFFSTSVAFVLPRDTNVT--ILRHLDNTTRFLREEDPFPTADDLARANSCGDSVEATITVEKLAAFSIMYVGAWLFLVVYRCAFLWRRRKRQR 167
            M+ GGASQ FW+  VNT+  R +C +W + S+  TV DL EGF  +   + D+FYSL GS+++RA  NC+ + PVG PFFST+V FV+P++      +L  L   TR LRE+D F +   LA  +SC D ++A IT  KL AF +MY   W  L++YR + L+  +++++
Sbjct:  291 MIAGGASQAFWHSAVNTTEVRKDCPQWGKFSM--TVEDLAEGFEAVKSNRADFFYSLEGSIVIRAQKNCDVFAPVGEPFFSTAVGFVMPKNIESLQRVLDELSRETRILREQDGFESVSVLADRSSCEDVIDARITPSKLWAFFVMYALCWGGLLLYRISRLYIMKRKEK 458

The following BLAST results are available for this feature:

BLAST of Gchil3334.t1 vs. uniprot

BLAST of Gchil3334.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QMF4_CHOCR	1.080e-35	42.94	PBPb domain-containing protein n=1 Tax=Chondrus cr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..230
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..136
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 137..160
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 161..230
None	No IPR available	TMHMM	TMhelix		coord: 137..159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:213837..214529 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3334.t1	Gchil3334.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000168_pilon 213837..214529 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil3334.t1 ID=Gchil3334.t1|Name=Gchil3334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=231bp
MVRGGASQDFWNKIVNTSFNRDNCKWDRRSVGTTVSDLEEGFRYLSERKV
DYFYSLRGSVIVRASINCEEYVPVGAPFFSTSVAFVLPRDTNVTILRHLD
NTTRFLREEDPFPTADDLARANSCGDSVEATITVEKLAAFSIMYVGAWLF
LVVYRCAFLWRRRKRQRYEQQEQQEQLFEPKYPDHAHVSISDLSKVGSVD
PDKRDEEEFSSEPNSGSLMNIEGHTHFHAG*