Gchil3340.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3340.t1
Unique NameGchil3340.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length114
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:281893..282234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.008G061400.1
PFAMsRhodanese
Max annot lvl35493|Streptophyta
Evalue1.65e-15
EggNOG OGsCOG0607@1|root,KOG1530@2759|Eukaryota,37UIG@33090|Viridiplantae,3GJMQ@35493|Streptophyta
DescriptionThiosulfate sulfurtransferase 16
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3340Gchil3340Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 281893..282234 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3340.t1.start1Gchil3340.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 281893..281895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3340.t1.CDS1Gchil3340.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 281893..282234 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3340.t1.exon1Gchil3340.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 281893..282234 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3340.t1.stop1Gchil3340.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 282232..282234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3340.t1Gchil3340.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 281893..282234 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3340.t1 ID=Gchil3340.t1|Name=Gchil3340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=114bp
MVTQLSPQAANEKMNQSSAIYVDVRTPAEFAAGHIPKSLNVSLTTPDMKP
LASFVDDFRAAVGDASEIIVGCKSGKRSTAAIVKLNEAGIEGLMELEGGF
SSWQSDSTLPVEK*
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spliced messenger RNA

>Gchil3340.t1 ID=Gchil3340.t1|Name=Gchil3340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp|location=Sequence derived from alignment at tig00000168_pilon:281893..282234+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACTCAGCTATCCCCGCAGGCTGCCAATGAAAAGATGAACCAATC
ATCTGCAATCTATGTCGACGTGCGAACGCCCGCCGAATTCGCTGCTGGAC
ACATACCCAAGTCCCTCAACGTGTCGCTCACCACTCCCGACATGAAACCG
CTTGCCTCCTTTGTTGATGATTTCCGTGCCGCTGTCGGTGATGCATCCGA
GATCATTGTCGGTTGCAAGAGTGGCAAACGGAGCACTGCCGCCATCGTCA
AGCTCAACGAAGCCGGCATTGAGGGCCTTATGGAGCTTGAGGGTGGTTTT
AGCAGCTGGCAAAGCGATTCCACTCTCCCAGTTGAAAAGTAA
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protein sequence of Gchil3340.t1

>Gchil3340.t1 ID=Gchil3340.t1|Name=Gchil3340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=114bp
MVTQLSPQAANEKMNQSSAIYVDVRTPAEFAAGHIPKSLNVSLTTPDMKP
LASFVDDFRAAVGDASEIIVGCKSGKRSTAAIVKLNEAGIEGLMELEGGF
SSWQSDSTLPVEK*
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mRNA from alignment at tig00000168_pilon:281893..282234+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3340.t1 ID=Gchil3340.t1|Name=Gchil3340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp|location=Sequence derived from alignment at tig00000168_pilon:281893..282234+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGACTCAGCTATCCCCGCAGGCTGCCAATGAAAAGATGAACCAATC
ATCTGCAATCTATGTCGACGTGCGAACGCCCGCCGAATTCGCTGCTGGAC
ACATACCCAAGTCCCTCAACGTGTCGCTCACCACTCCCGACATGAAACCG
CTTGCCTCCTTTGTTGATGATTTCCGTGCCGCTGTCGGTGATGCATCCGA
GATCATTGTCGGTTGCAAGAGTGGCAAACGGAGCACTGCCGCCATCGTCA
AGCTCAACGAAGCCGGCATTGAGGGCCTTATGGAGCTTGAGGGTGGTTTT
AGCAGCTGGCAAAGCGATTCCACTCTCCCAGTTGAAAAGTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:281893..282234+

>Gchil3340.t1 ID=Gchil3340.t1|Name=Gchil3340.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=342bp|location=Sequence derived from alignment at tig00000168_pilon:281893..282234+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGACTCAGCTATCCCCGCAGGCTGCCAATGAAAAGATGAACCAATC
ATCTGCAATCTATGTCGACGTGCGAACGCCCGCCGAATTCGCTGCTGGAC
ACATACCCAAGTCCCTCAACGTGTCGCTCACCACTCCCGACATGAAACCG
CTTGCCTCCTTTGTTGATGATTTCCGTGCCGCTGTCGGTGATGCATCCGA
GATCATTGTCGGTTGCAAGAGTGGCAAACGGAGCACTGCCGCCATCGTCA
AGCTCAACGAAGCCGGCATTGAGGGCCTTATGGAGCTTGAGGGTGGTTTT
AGCAGCTGGCAAAGCGATTCCACTCTCCCAGTTGAAAAGTAA
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