Gchil3335.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3335.t1
Unique NameGchil3335.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:221364..223150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog592029.DDD_1649
PFAMsMacro
Max annot lvl2|Bacteria
Evalue1.99e-06
EggNOG OGsCOG2110@1|root,COG2110@2|Bacteria
Descriptionphosphatase homologous to the C-terminal domain of histone macroH2A1
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3335Gchil3335Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 221364..223150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3335.t1Gchil3335.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 221364..223150 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3335.t1.stop1Gchil3335.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 221364..221366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3335.t1.CDS1Gchil3335.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 221364..221478 -
Gchil3335.t1.CDS2Gchil3335.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 221810..222607 -
Gchil3335.t1.CDS3Gchil3335.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 222753..223150 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3335.t1.exon1Gchil3335.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 221364..221478 -
Gchil3335.t1.exon2Gchil3335.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 221810..222607 -
Gchil3335.t1.exon3Gchil3335.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 222753..223150 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3335.t1.intron1Gchil3335.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 221479..221809 -
Gchil3335.t1.intron2Gchil3335.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 222608..222752 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3335.t1.start1Gchil3335.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 223148..223150 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3335.t1 ID=Gchil3335.t1|Name=Gchil3335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=437bp
MPDMKIVYGDINKYARCGKVDVLIKPMSGRSACLGTVKIGPSQPGANGHT
FIVIHAYVIHACSSGDYVDLTGLYKAFKCIRDKFSKLRIAYPKIGEGLKG
PSWAVICRTINSALKCCHHTVVVPKKKKCKPKDLALSRSPVLSLADRVGR
RAVVVAMFASTSTAALAATPARRVVSPAIRVTLAVALKLLSTVGALRIVA
DRAAASRLPEPLPSGLLQSRLLPVRRPPNRRPPSRRPQSHHRLPRNRLKN
LRTSRSNPNTPPRHRVPVPQAPASAVSKGRSTVARRFPSIPVTTRTPAGA
VAIVGNVPKLCRALVHCRVESLAVSRAAARLARSVRLCRRRVPVRMTLAR
NALALHPAPSAWRIRPNRLPVTCLRRLRRPSRVLVPSVALAPAHAVLHRH
DRGLVHLAVRDFDWFMEKLGPVASRSVCFVVQFHVS*
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spliced messenger RNA

>Gchil3335.t1 ID=Gchil3335.t1|Name=Gchil3335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000168_pilon:221364..223150- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGATATGAAGATAGTCTACGGCGACATCAACAAGTACGCGCGATG
CGGAAAGGTTGATGTCCTCATCAAGCCCATGTCCGGACGCAGCGCCTGTC
TCGGCACCGTCAAGATCGGCCCCTCCCAGCCCGGTGCAAACGGCCACACC
TTCATCGTCATCCACGCCTATGTCATTCACGCATGCTCCAGCGGCGACTA
CGTCGATCTCACCGGCCTCTACAAGGCCTTCAAGTGCATCCGCGACAAGT
TCTCCAAGCTCCGCATCGCGTATCCGAAGATTGGTGAAGGTCTCAAGGGC
CCGTCTTGGGCCGTCATCTGTCGTACAATCAACTCGGCCCTCAAGTGTTG
TCACCACACCGTCGTCGTTCCGAAGAAGAAGAAGTGCAAGCCGAAAGACC
TTGCCCTGAGCCGCAGCCCTGTCCTGAGCCTTGCAGACCGTGTAGGCCGT
CGTGCGGTAGTGGTGGCTATGTTCGCATCAACATCAACAGCGGCGCTTGC
TGCAACCCCTGCACGCCGTGTTGTGAGCCCTGCAATCCGTGTGACTCTTG
CAGTGGCCCTAAAATTGTTGTCAACCGTGGGTGCCCTCCGGATTGTTGCA
GACCGTGCTGCAGCAAGCCGTCTACCAGAGCCACTTCCATCAGGCCTTCT
ACAAAGCCGCCTTCTACCCGTCCGCCGACCACCAAACCGCCGACCACCAA
GCCGCCGACCACAAAGCCACCACCGTCTTCCAAGAAATCGTCTAAAAAAT
CTTCGCACAAGTCGATCAAATCCAAATACACCACCAAGGCATCGAGTTCC
TGTGCCCCAAGCACCCGCAAGTGCTGTTTCAAAAGGGAGAAGTACTGTTG
CCCGGCGCTTTCCGTCGATCCCTGTGACGACCCGGACTCCTGCAGGGGCT
GTGGCGATTGTAGGAAATGTTCCGAAACTTTGTCGTGCGCTGGTACATTG
TCGTGTGGAAAGTCTTGCGGTAAGTCGTGCAGCAGCTCGTCTTGCAAGGA
GTGTAAGACTATGTCGAAGAAGAGTTCCTGTCCGGATGACTCTTGCTCGG
AATGCACTAGCACTACATCCTGCTCCGAGTGCATGGCGTATTCGGCCAAA
CCGTCTTCCCGTTACATGTCTTCGTCGTCTTCGTCGTCCAAGTCGAGTTC
TTGTTCCGAGTGTAGCTCTAGCTCCTGCTCATGCTGTACTTCATCGTCAT
GATCGTGGACTTGTGCACCTCGCTGTGCGGGATTTCGATTGGTTCATGGA
AAAGCTTGGACCCGTTGCGTCTCGCTCTGTGTGTTTCGTTGTTCAATTTC
ATGTCTCATGA
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protein sequence of Gchil3335.t1

>Gchil3335.t1 ID=Gchil3335.t1|Name=Gchil3335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=437bp
MPDMKIVYGDINKYARCGKVDVLIKPMSGRSACLGTVKIGPSQPGANGHT
FIVIHAYVIHACSSGDYVDLTGLYKAFKCIRDKFSKLRIAYPKIGEGLKG
PSWAVICRTINSALKCCHHTVVVPKKKKCKPKDLALSRSPVLSLADRVGR
RAVVVAMFASTSTAALAATPARRVVSPAIRVTLAVALKLLSTVGALRIVA
DRAAASRLPEPLPSGLLQSRLLPVRRPPNRRPPSRRPQSHHRLPRNRLKN
LRTSRSNPNTPPRHRVPVPQAPASAVSKGRSTVARRFPSIPVTTRTPAGA
VAIVGNVPKLCRALVHCRVESLAVSRAAARLARSVRLCRRRVPVRMTLAR
NALALHPAPSAWRIRPNRLPVTCLRRLRRPSRVLVPSVALAPAHAVLHRH
DRGLVHLAVRDFDWFMEKLGPVASRSVCFVVQFHVS*
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mRNA from alignment at tig00000168_pilon:221364..223150-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3335.t1 ID=Gchil3335.t1|Name=Gchil3335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1787bp|location=Sequence derived from alignment at tig00000168_pilon:221364..223150- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGATATGAAGATAGTCTACGGCGACATCAACAAGTACGCGCGATG
CGGAAAGGTTGATGTCCTCATCAAGCCCATGTCCGGACGCAGCGCCTGTC
TCGGCACCGTCAAGATCGGCCCCTCCCAGCCCGGTGCAAACGGCCACACC
TTCATCGTCATCCACGCCTATGTCATTCACGCATGCTCCAGCGGCGACTA
CGTCGATCTCACCGGCCTCTACAAGGCCTTCAAGTGCATCCGCGACAAGT
TCTCCAAGCTCCGCATCGCGTATCCGAAGATTGGTGAAGGTCTCAAGGGC
CCGTCTTGGGCCGTCATCTGTCGTACAATCAACTCGGCCCTCAAGTGTTG
TCACCACACCGTCGTCGTTCCGAAGAAGAAGAAGTGCAAGCCGAAAGAGT
GCGTCGAAGAGGAGGAGGAGTGCCCGGAACCGGAGCCCTGCCCTGAGCCG
GAGCCTTGCCCTGAGCCGGAGCCTTGTCCGGAGCCCGAACCTTGCCCGGA
GCCCGAACCTTGCCCTGAGCCGGAACCTTGCCCCGAGCCGCAGCCTTGCC
CTGAGCCGCAGCCCTGTCCTGAGCCTTGCAGACCGTGTAGGCCGTCGTGC
GGTAGTGGTGGCTATGTTCGCATCAACATCAACAGCGGCGCTTGCTGCAA
CCCCTGCACGCCGTGTTGTGAGCCCTGCAATCCGTGTGACTCTTGCAGTG
GCCCTAAAATTGTTGTCAACCGTGGGTGCCCTCCGGATTGTTGCAGACCG
TGCTGCAGCAAGCCGTCTACCAGAGCCACTTCCATCAGGCCTTCTACAAA
GCCGCCTTCTACCCGTCCGCCGACCACCAAACCGCCGACCACCAAGCCGC
CGACCACAAAGCCACCACCGTCTTCCAAGAAATCGTCTAAAAAATCTTCG
CACAAGTCGATCAAATCCAAATACACCACCAAGGCATCGAGTTCCTGTGC
CCCAAGCACCCGCAAGTGCTGTTTCAAAAGGGAGAAGTACTGTTGCCCGG
CGCTTTCCGTCGATCCCTGTGACGACCCGGACTCCTGCAGGGGCTGTGGC
GATTGTAGGAAATGTTCCGAAACTTTGTCGTGCGCTGGTACATTGTCGTG
TGGAAAGTCTTGCGGTAAGTCGTGCAGCAGCTCGTCTTGCAAGGAGTGTA
AGACTATGTCGAAGAAGAGTTCCTGTCCGGATGACTCTTGCTCGGAATGC
ACTAGCACTACATCCTGCTCCGAGTGCATGGCGTATTCGGCCAAACCGTC
TTCCCGTTACATGTCTTCGTCGTCTTCGTCGTCCAAGTCGAGTTCTTGTT
CCGAGTGTAGCTCTAGCTCCTGCTCATGCTGTACTTCATCGGTGAGTTGC
ACTACCCCGTCGTCATCTTCGTCGTCTCTGTACTACGCTGCACCTTCCAA
TGCACACGGGCGCTCTTCACGCACTGCTCGTAGCAGGCCGTACTCCAAGG
ACTCTGCGGGAGTTTGCGTGGAGTGTAAGGATATTGATATTTTGTCAAGA
GACGGTCGATGCAGCCGTTGCTCCTAACTGTGCGCGTGTGTGTTGGAAGC
GCTGCGGAAGTTTTTGACGTTGCCAAATTTAGTGCGAAAACGAACTTCTA
ATAGGATTACTAACGTTCAACTGGTTTTGTGTTTTCGCTTCTTTCTTGTG
ATATTTATCTTTTTCAACGTAGTCATGATCGTGGACTTGTGCACCTCGCT
GTGCGGGATTTCGATTGGTTCATGGAAAAGCTTGGACCCGTTGCGTCTCG
CTCTGTGTGTTTCGTTGTTCAATTTCATGTCTCATGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:221364..223150-

>Gchil3335.t1 ID=Gchil3335.t1|Name=Gchil3335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000168_pilon:221364..223150- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGATATGAAGATAGTCTACGGCGACATCAACAAGTACGCGCGATG
CGGAAAGGTTGATGTCCTCATCAAGCCCATGTCCGGACGCAGCGCCTGTC
TCGGCACCGTCAAGATCGGCCCCTCCCAGCCCGGTGCAAACGGCCACACC
TTCATCGTCATCCACGCCTATGTCATTCACGCATGCTCCAGCGGCGACTA
CGTCGATCTCACCGGCCTCTACAAGGCCTTCAAGTGCATCCGCGACAAGT
TCTCCAAGCTCCGCATCGCGTATCCGAAGATTGGTGAAGGTCTCAAGGGC
CCGTCTTGGGCCGTCATCTGTCGTACAATCAACTCGGCCCTCAAGTGTTG
TCACCACACCGTCGTCGTTCCGAAGAAGAAGAAGTGCAAGCCGAAAGACC
TTGCCCTGAGCCGCAGCCCTGTCCTGAGCCTTGCAGACCGTGTAGGCCGT
CGTGCGGTAGTGGTGGCTATGTTCGCATCAACATCAACAGCGGCGCTTGC
TGCAACCCCTGCACGCCGTGTTGTGAGCCCTGCAATCCGTGTGACTCTTG
CAGTGGCCCTAAAATTGTTGTCAACCGTGGGTGCCCTCCGGATTGTTGCA
GACCGTGCTGCAGCAAGCCGTCTACCAGAGCCACTTCCATCAGGCCTTCT
ACAAAGCCGCCTTCTACCCGTCCGCCGACCACCAAACCGCCGACCACCAA
GCCGCCGACCACAAAGCCACCACCGTCTTCCAAGAAATCGTCTAAAAAAT
CTTCGCACAAGTCGATCAAATCCAAATACACCACCAAGGCATCGAGTTCC
TGTGCCCCAAGCACCCGCAAGTGCTGTTTCAAAAGGGAGAAGTACTGTTG
CCCGGCGCTTTCCGTCGATCCCTGTGACGACCCGGACTCCTGCAGGGGCT
GTGGCGATTGTAGGAAATGTTCCGAAACTTTGTCGTGCGCTGGTACATTG
TCGTGTGGAAAGTCTTGCGGTAAGTCGTGCAGCAGCTCGTCTTGCAAGGA
GTGTAAGACTATGTCGAAGAAGAGTTCCTGTCCGGATGACTCTTGCTCGG
AATGCACTAGCACTACATCCTGCTCCGAGTGCATGGCGTATTCGGCCAAA
CCGTCTTCCCGTTACATGTCTTCGTCGTCTTCGTCGTCCAAGTCGAGTTC
TTGTTCCGAGTGTAGCTCTAGCTCCTGCTCATGCTGTACTTCATCGTCAT
GATCGTGGACTTGTGCACCTCGCTGTGCGGGATTTCGATTGGTTCATGGA
AAAGCTTGGACCCGTTGCGTCTCGCTCTGTGTGTTTCGTTGTTCAATTTC
ATGTCTCATGA
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