Gchil3363.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3363.t1
Unique NameGchil3363.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:437768..438897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3363Gchil3363Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 437768..438897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3363.t1Gchil3363.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 437768..438897 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3363.t1.start1Gchil3363.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 437768..437770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3363.t1.CDS1Gchil3363.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 437768..437789 +
Gchil3363.t1.CDS2Gchil3363.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 438544..438690 +
Gchil3363.t1.CDS3Gchil3363.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 438866..438897 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3363.t1.exon1Gchil3363.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 437768..437789 +
Gchil3363.t1.exon2Gchil3363.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 438544..438690 +
Gchil3363.t1.exon3Gchil3363.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 438866..438897 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3363.t1.intron1Gchil3363.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 437790..438543 +
Gchil3363.t1.intron2Gchil3363.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 438691..438865 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3363.t1.stop1Gchil3363.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 438895..438897 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3363.t1 ID=Gchil3363.t1|Name=Gchil3363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=67bp
MADANPTMVFLHSLSTETFYSLFSSFDSTSVLSANGPSKLTDFAPLRPSF
YTLFFSVLIFYRPVQN*
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spliced messenger RNA

>Gchil3363.t1 ID=Gchil3363.t1|Name=Gchil3363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=201bp|location=Sequence derived from alignment at tig00000168_pilon:437768..438897+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACGCCAACCCCACGATGGTTTTTCTGCACAGCCTTTCTACTGA
AACTTTTTATTCATTATTCTCATCCTTTGACAGCACCTCCGTTCTCTCCG
CTAATGGCCCGTCCAAACTAACCGATTTTGCTCCATTGAGGCCTTCCTTT
TATACCCTCTTCTTTTCAGTGCTTATTTTTTATAGACCAGTTCAAAACTG
A
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protein sequence of Gchil3363.t1

>Gchil3363.t1 ID=Gchil3363.t1|Name=Gchil3363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=67bp
MADANPTMVFLHSLSTETFYSLFSSFDSTSVLSANGPSKLTDFAPLRPSF
YTLFFSVLIFYRPVQN*
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mRNA from alignment at tig00000168_pilon:437768..438897+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3363.t1 ID=Gchil3363.t1|Name=Gchil3363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1130bp|location=Sequence derived from alignment at tig00000168_pilon:437768..438897+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACGCCAACCCCACGAGTAGCTTGTGGAACAGCGTGTGCCACAG
ATCGCGCATCTTTCAATCCACCTTGGGCTGACGTCATCGAGAGATACCGC
ACTTTTTTCTAGGTCGCCCACGCGTGTCAGAACAAACGGGACACGTGCGT
GCCACGTGTCATTACGCCACGACCCCAAATTCACCCGCAACCATCGCCAA
TTGGACGTTCTTAAAACCACCGTGCGCATATGTTGTTTTTCCCGGATTTC
AGTACCAGCCAGCACATCACATAACGATTTAGCTGAAAAGCTACCGCAGC
TCCGTTCTGCCACCACAGAGCATCTGGCCATAGCCAATCCCCCTCGTCGG
CGACAAGCTGGCAAAAGGCGTCCCCCTTGTTTCCATCTCTAGCCCGCAAA
TCTCTCAGCTGTCAATCTCCCCGCCCTATCCCTGCTATCGCCCACCACAT
GCATTGCGcacacacccacccacacacccacccacacacacacccCTCCC
TTTCAGACCAGGTCATCAGCGACCAGCGAAAATGCCCACATCCTCATACA
CGACTCATTTTTCGTTTTTTTCTGTTGCATGACTTTGCACTCTGAACTGA
TTTTGACGAACTCATTCATCTTTACAAATAATTAATTACTCGTTGTGCCA
CAGTCAACCCATCTACCAGTCAACATTTAGTTTCCGACGACTCGTCTAAA
AACATCTATCTCACACGTTCTCTTGCGTCCATCACGTGCTTGTTTTGACC
CCTGCTCTCTTCGTCCACACATCTAGTGGTTTTTCTGCACAGCCTTTCTA
CTGAAACTTTTTATTCATTATTCTCATCCTTTGACAGCACCTCCGTTCTC
TCCGCTAATGGCCCGTCCAAACTAACCGATTTTGCTCCATTGAGGCCTTC
CTTTTATACCCTCTTCTTTTCAGGTATGCGATGATCGCCCTTTCCAGTGC
TCATTCTTTAGCACTGTTGCTTCTCAGGCTCTTTGCTGGGGTACTATGTC
GTCAATTTTTCCATGAGCCGTTTGCAGAGCCCTCTCAGCATTTCACTAAC
ACAAACACTGCGTGTTCGTTTGCTTTTCGTTTCTTGCTCATCACCCAGTG
CTTATTTTTTATAGACCAGTTCAAAACTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:437768..438897+

>Gchil3363.t1 ID=Gchil3363.t1|Name=Gchil3363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=201bp|location=Sequence derived from alignment at tig00000168_pilon:437768..438897+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACGCCAACCCCACGATGGTTTTTCTGCACAGCCTTTCTACTGA
AACTTTTTATTCATTATTCTCATCCTTTGACAGCACCTCCGTTCTCTCCG
CTAATGGCCCGTCCAAACTAACCGATTTTGCTCCATTGAGGCCTTCCTTT
TATACCCTCTTCTTTTCAGTGCTTATTTTTTATAGACCAGTTCAAAACTG
A
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