Gchil3306.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3306.t1
Unique NameGchil3306.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:95731..97019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_1735
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue9.82e-81
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3306Gchil3306Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 95731..97019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3306.t1Gchil3306.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 95731..97019 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3306.t1.start1Gchil3306.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 95731..95733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3306.t1.CDS1Gchil3306.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 95731..95945 +
Gchil3306.t1.CDS2Gchil3306.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 96029..97019 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3306.t1.exon1Gchil3306.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 95731..95945 +
Gchil3306.t1.exon2Gchil3306.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 96029..97019 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3306.t1.intron1Gchil3306.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000168_pilon 95946..96028 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3306.t1.stop1Gchil3306.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 97017..97019 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3306.t1 ID=Gchil3306.t1|Name=Gchil3306.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp
MYCFVPTASRFTPLQGRVLRHGSNRTARRPLWVGPVAERQVAAPQTTPTT
PTIDKNLPSKRICVFSDGSWNSPDIETLTNVSYLAQAVQYAGPSGVPQLV
FYDQGVGTEGDALDKIKGGAMGVGIDLNIKQLYTFLVMNYVEGDEIYLFG
FSRGAYTVRSLAGMMFESGLLYRNKLDFVTEAYTLYRENIDVESERAKEF
RAEHARRVPITALVCFDTVGALGVPSYAPFPFSLFSRNEKYAFHDTTLSE
LVNNAIHVVSIDEEMVPFEPTLMSHNPKVGPSQLTQVYMPGRHGGIGGGN
KQAEPLARNALKFVVDEMKRRGLALDVDCSVVPEEYVLDCMPKERASRLS
LFGLVGLTMGMRSRKIDSLDSLHECVPKMYRTLKWRPGALEPFKEQLLGD
G*
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spliced messenger RNA

>Gchil3306.t1 ID=Gchil3306.t1|Name=Gchil3306.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000168_pilon:95731..97019+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTGCTTCGTTCCCACCGCTTCTCGTTTCACGCCTCTGCAGGGCCG
TGTTTTGCGCCATGGCTCGAATCGCACAGCGCGTCGACCATTATGGGTCG
GGCCAGTGGCGGAGCGTCAGGTTGCAGCCCCTCAAACAACGCCCACAACT
CCCACGATAGACAAAAATCTTCCGTCAAAACGTATATGCGTGTTCTCCGA
CGGAAGCTGGAATTCTCCTGACATAGAGACTCTGACCAATGTTTCTTACC
TCGCACAGGCCGTTCAGTATGCGGGTCCAAGCGGAGTGCCACAGTTGGTG
TTCTACGACCAAGGGGTGGGAACAGAAGGTGATGCGCTCGACAAGATTAA
AGGCGGGGCGATGGGAGTGGGTATCGACCTGAACATCAAGCAGCTGTACA
CGTTCCTCGTGATGAACTATGTAGAGGGGGATGAGATTTACCTGTTTGGG
TTTTCTCGCGGCGCATATACGGTGCGCTCTCTTGCAGGGATGATGTTCGA
ATCCGGTTTGCTGTACCGAAACAAACTGGACTTTGTGACAGAGGCGTACA
CGTTGTACCGAGAAAATATAGATGTGGAATCTGAACGCGCTAAAGAATTT
CGGGCCGAGCACGCACGTCGTGTGCCAATCACCGCGCTGGTGTGCTTCGA
CACGGTAGGGGCGTTGGGAGTTCCGTCATACGCGCCATTTCCGTTTTCGC
TGTTCTCTCGAAATGAAAAGTACGCGTTTCACGACACGACGCTTTCCGAA
CTGGTGAACAATGCGATTCACGTGGTGTCCATCGACGAGGAGATGGTTCC
GTTCGAGCCGACGCTGATGTCGCACAACCCCAAGGTTGGGCCGTCGCAAC
TGACGCAGGTGTACATGCCGGGTCGGCACGGGGGCATTGGAGGTGGGAAC
AAGCAGGCGGAACCGCTGGCTAGAAACGCGCTCAAGTTTGTGGTGGATGA
GATGAAGCGAAGGGGGCTTGCGTTGGATGTGGACTGCAGTGTGGTGCCCG
AGGAGTACGTGCTGGATTGCATGCCCAAGGAGCGCGCTTCGAGACTGTCT
CTGTTTGGTTTGGTGGGACTGACGATGGGCATGCGAAGCCGCAAAATCGA
CTCGTTGGATAGCCTGCACGAGTGCGTTCCGAAGATGTACCGCACACTCA
AGTGGCGTCCTGGCGCGCTGGAGCCGTTCAAGGAGCAGCTGCTCGGCGAT
GGGTGA
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protein sequence of Gchil3306.t1

>Gchil3306.t1 ID=Gchil3306.t1|Name=Gchil3306.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MYCFVPTASRFTPLQGRVLRHGSNRTARRPLWVGPVAERQVAAPQTTPTT
PTIDKNLPSKRICVFSDGSWNSPDIETLTNVSYLAQAVQYAGPSGVPQLV
FYDQGVGTEGDALDKIKGGAMGVGIDLNIKQLYTFLVMNYVEGDEIYLFG
FSRGAYTVRSLAGMMFESGLLYRNKLDFVTEAYTLYRENIDVESERAKEF
RAEHARRVPITALVCFDTVGALGVPSYAPFPFSLFSRNEKYAFHDTTLSE
LVNNAIHVVSIDEEMVPFEPTLMSHNPKVGPSQLTQVYMPGRHGGIGGGN
KQAEPLARNALKFVVDEMKRRGLALDVDCSVVPEEYVLDCMPKERASRLS
LFGLVGLTMGMRSRKIDSLDSLHECVPKMYRTLKWRPGALEPFKEQLLGD
G*
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mRNA from alignment at tig00000168_pilon:95731..97019+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3306.t1 ID=Gchil3306.t1|Name=Gchil3306.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1289bp|location=Sequence derived from alignment at tig00000168_pilon:95731..97019+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATTGCTTCGTTCCCACCGCTTCTCGTTTCACGCCTCTGCAGGGCCG
TGTTTTGCGCCATGGCTCGAATCGCACAGCGCGTCGACCATTATGGGTCG
GGCCAGTGGCGGAGCGTCAGGTTGCAGCCCCTCAAACAACGCCCACAACT
CCCACGATAGACAAAAATCTTCCGTCAAAACGTATATGCGTGTTCTCCGA
CGGAAGCTGGAATTCGTAAGTGCTTGTTGATATGGGCGCGGATGGCGGGG
GAAGTTGTGTGCGAAAGCTAACAGTGTCATGTGTTTCGCGAACGCAAGTC
CTGACATAGAGACTCTGACCAATGTTTCTTACCTCGCACAGGCCGTTCAG
TATGCGGGTCCAAGCGGAGTGCCACAGTTGGTGTTCTACGACCAAGGGGT
GGGAACAGAAGGTGATGCGCTCGACAAGATTAAAGGCGGGGCGATGGGAG
TGGGTATCGACCTGAACATCAAGCAGCTGTACACGTTCCTCGTGATGAAC
TATGTAGAGGGGGATGAGATTTACCTGTTTGGGTTTTCTCGCGGCGCATA
TACGGTGCGCTCTCTTGCAGGGATGATGTTCGAATCCGGTTTGCTGTACC
GAAACAAACTGGACTTTGTGACAGAGGCGTACACGTTGTACCGAGAAAAT
ATAGATGTGGAATCTGAACGCGCTAAAGAATTTCGGGCCGAGCACGCACG
TCGTGTGCCAATCACCGCGCTGGTGTGCTTCGACACGGTAGGGGCGTTGG
GAGTTCCGTCATACGCGCCATTTCCGTTTTCGCTGTTCTCTCGAAATGAA
AAGTACGCGTTTCACGACACGACGCTTTCCGAACTGGTGAACAATGCGAT
TCACGTGGTGTCCATCGACGAGGAGATGGTTCCGTTCGAGCCGACGCTGA
TGTCGCACAACCCCAAGGTTGGGCCGTCGCAACTGACGCAGGTGTACATG
CCGGGTCGGCACGGGGGCATTGGAGGTGGGAACAAGCAGGCGGAACCGCT
GGCTAGAAACGCGCTCAAGTTTGTGGTGGATGAGATGAAGCGAAGGGGGC
TTGCGTTGGATGTGGACTGCAGTGTGGTGCCCGAGGAGTACGTGCTGGAT
TGCATGCCCAAGGAGCGCGCTTCGAGACTGTCTCTGTTTGGTTTGGTGGG
ACTGACGATGGGCATGCGAAGCCGCAAAATCGACTCGTTGGATAGCCTGC
ACGAGTGCGTTCCGAAGATGTACCGCACACTCAAGTGGCGTCCTGGCGCG
CTGGAGCCGTTCAAGGAGCAGCTGCTCGGCGATGGGTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:95731..97019+

>Gchil3306.t1 ID=Gchil3306.t1|Name=Gchil3306.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000168_pilon:95731..97019+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATTGCTTCGTTCCCACCGCTTCTCGTTTCACGCCTCTGCAGGGCCG
TGTTTTGCGCCATGGCTCGAATCGCACAGCGCGTCGACCATTATGGGTCG
GGCCAGTGGCGGAGCGTCAGGTTGCAGCCCCTCAAACAACGCCCACAACT
CCCACGATAGACAAAAATCTTCCGTCAAAACGTATATGCGTGTTCTCCGA
CGGAAGCTGGAATTCTCCTGACATAGAGACTCTGACCAATGTTTCTTACC
TCGCACAGGCCGTTCAGTATGCGGGTCCAAGCGGAGTGCCACAGTTGGTG
TTCTACGACCAAGGGGTGGGAACAGAAGGTGATGCGCTCGACAAGATTAA
AGGCGGGGCGATGGGAGTGGGTATCGACCTGAACATCAAGCAGCTGTACA
CGTTCCTCGTGATGAACTATGTAGAGGGGGATGAGATTTACCTGTTTGGG
TTTTCTCGCGGCGCATATACGGTGCGCTCTCTTGCAGGGATGATGTTCGA
ATCCGGTTTGCTGTACCGAAACAAACTGGACTTTGTGACAGAGGCGTACA
CGTTGTACCGAGAAAATATAGATGTGGAATCTGAACGCGCTAAAGAATTT
CGGGCCGAGCACGCACGTCGTGTGCCAATCACCGCGCTGGTGTGCTTCGA
CACGGTAGGGGCGTTGGGAGTTCCGTCATACGCGCCATTTCCGTTTTCGC
TGTTCTCTCGAAATGAAAAGTACGCGTTTCACGACACGACGCTTTCCGAA
CTGGTGAACAATGCGATTCACGTGGTGTCCATCGACGAGGAGATGGTTCC
GTTCGAGCCGACGCTGATGTCGCACAACCCCAAGGTTGGGCCGTCGCAAC
TGACGCAGGTGTACATGCCGGGTCGGCACGGGGGCATTGGAGGTGGGAAC
AAGCAGGCGGAACCGCTGGCTAGAAACGCGCTCAAGTTTGTGGTGGATGA
GATGAAGCGAAGGGGGCTTGCGTTGGATGTGGACTGCAGTGTGGTGCCCG
AGGAGTACGTGCTGGATTGCATGCCCAAGGAGCGCGCTTCGAGACTGTCT
CTGTTTGGTTTGGTGGGACTGACGATGGGCATGCGAAGCCGCAAAATCGA
CTCGTTGGATAGCCTGCACGAGTGCGTTCCGAAGATGTACCGCACACTCA
AGTGGCGTCCTGGCGCGCTGGAGCCGTTCAAGGAGCAGCTGCTCGGCGAT
GGGTGA
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