Gchil3358.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3358.t1
Unique Name	Gchil3358.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	474

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:419043..420464 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3358	Gchil3358	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 419043..420464 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3358.t1.start1	Gchil3358.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 419043..419045 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3358.t1.CDS1	Gchil3358.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 419043..420464 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3358.t1.exon1	Gchil3358.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 419043..420464 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3358.t1.stop1	Gchil3358.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 420462..420464 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3358.t1	Gchil3358.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 419043..420464 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:419043..420464+
coding sequence from alignment at tig00000168_pilon:419043..420464+

mRNA sequence

>Gchil3358.t1 ID=Gchil3358.t1|Name=Gchil3358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
METPATRSRSRQSGDARSTDVPQALAPTPDSREIPGTGTEDPQPDSGLTT
VATVVSPPPRLVDQSRTVRLEEQLRSLRAAHNTLSREFTSLRGSLANPPP
SELAEDIRVSRSDVNTLLECFGAPSSYAEGMENRFERLRSRIESVERTLT
SPANAARPVVSHRETQSRNRKSRKDRDSNRKHGHPSDSSSESDGKPSDSE
SSDSSVSDDPQDLYGRSSRSKRSSATYGAIRSRPKGRRHPGLKPFKPTNP
LYRTFLSYRYYRLEDSSLVRTPRNTGKVKDCIKRMQLSLRNRSSTGDDPI
LVLDFLHSFVAEDHILGMNEGQAYVALPYFLRGFAEDQFLSVRGSSPACE
GGVTCWPEAVQYLLRSYATNSAIQAAILALRDTRQRSGELETDYSVRLNK
AFHRCGNVYPAWERCTMFIDGLDPAIKTVVARYREQEPKVTYLELVQFAR
AEGDALRARNPGSWSKAAKALLL*

spliced messenger RNA

>Gchil3358.t1 ID=Gchil3358.t1|Name=Gchil3358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000168_pilon:419043..420464+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggagactcctgcaacacgcagccgttcccgccaaagcggtgatgccag
gagcactgatgttccacaggccctggctccaacaccggattcccgggaga
taccgggcaccggcactgaagacccgcagcccgattccgggttaacgacc
gtcgcaacggtggtttctccgcctccgcggttggtcgaccaatcgcggac
tgtacgcttggaagagcagctccgctccctgcgggctgctcacaataccc
tttcgagggagttcacctctttacgaggaagcctcgctaacccccctcca
agtgagttagccgaggatatccgcgtatcgcggtcggacgtcaatacact
actcgagtgttttggcgctccgtcttcctacgcagaaggtatggagaatc
gcttcgagcgtctccgaagccgaattgagtcggtcgagaggacgttaacc
tcgcccgcgaacgcggctagaccggttgtctctcaccgagagacccagtc
gcggaaccggaagagccggaaggaccgggattctaaccgtaagcacggac
acccgtccgactcatcatctgagtcggacggtaaaccgagtgactcggag
agttccgattcgtcggtgagcgatgacccacaggatctttatgggcgctc
ttcccgctcaaagcggtcctctgccacctacggggccatccggtcgcgcc
ccaagggtcggcgacatccgggcctcaaaccctttaagcccaccaaccct
ctgtacaggacattcctgtcctaccggtattaccggctagaagattcgtc
tttagttcggacaccgcgtaacacgggtaaagtgaaagactgcatcaagc
ggatgcagctttcacttcgtaaccggtcgtctactggggatgatccaatt
ctggtcttggatttcctacacagctttgtagcggaagaccatatactcgg
aatgaacgaaggacaagcctacgtggcgctaccctactttctacggggtt
tcgctgaagatcagtttttgtcggttcggggctcgtcgccagcctgcgaa
ggaggtgtgacctgctggcccgaggccgtgcagtacctcctgcgttccta
cgcaaccaactccgcgatacaagcggcgatactcgctttgcgagacactc
gacaacgctccggcgagctcgagaccgactactcggtacgcctgaataag
gctttccaccgttgtggtaatgtataccccgcttgggaacgctgtacgat
gttcattgatggcttggatccagccatcaagactgttgtcgcccgttaca
gggaacaagagccgaaggtgacttaccttgaactcgtacagtttgcccgc
gcagagggagatgcactacgtgcacgcaatccgggaagctggtcgaaggc
cgctaaggcattgctgctttag

protein sequence of Gchil3358.t1

>Gchil3358.t1 ID=Gchil3358.t1|Name=Gchil3358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
METPATRSRSRQSGDARSTDVPQALAPTPDSREIPGTGTEDPQPDSGLTT
VATVVSPPPRLVDQSRTVRLEEQLRSLRAAHNTLSREFTSLRGSLANPPP
SELAEDIRVSRSDVNTLLECFGAPSSYAEGMENRFERLRSRIESVERTLT
SPANAARPVVSHRETQSRNRKSRKDRDSNRKHGHPSDSSSESDGKPSDSE
SSDSSVSDDPQDLYGRSSRSKRSSATYGAIRSRPKGRRHPGLKPFKPTNP
LYRTFLSYRYYRLEDSSLVRTPRNTGKVKDCIKRMQLSLRNRSSTGDDPI
LVLDFLHSFVAEDHILGMNEGQAYVALPYFLRGFAEDQFLSVRGSSPACE
GGVTCWPEAVQYLLRSYATNSAIQAAILALRDTRQRSGELETDYSVRLNK
AFHRCGNVYPAWERCTMFIDGLDPAIKTVVARYREQEPKVTYLELVQFAR
AEGDALRARNPGSWSKAAKALLL*

mRNA from alignment at tig00000168_pilon:419043..420464+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3358.t1 ID=Gchil3358.t1|Name=Gchil3358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000168_pilon:419043..420464+ (Gracilaria chilensis NLEC103_M9 male)
atggagactcctgcaacacgcagccgttcccgccaaagcggtgatgccag
gagcactgatgttccacaggccctggctccaacaccggattcccgggaga
taccgggcaccggcactgaagacccgcagcccgattccgggttaacgacc
gtcgcaacggtggtttctccgcctccgcggttggtcgaccaatcgcggac
tgtacgcttggaagagcagctccgctccctgcgggctgctcacaataccc
tttcgagggagttcacctctttacgaggaagcctcgctaacccccctcca
agtgagttagccgaggatatccgcgtatcgcggtcggacgtcaatacact
actcgagtgttttggcgctccgtcttcctacgcagaaggtatggagaatc
gcttcgagcgtctccgaagccgaattgagtcggtcgagaggacgttaacc
tcgcccgcgaacgcggctagaccggttgtctctcaccgagagacccagtc
gcggaaccggaagagccggaaggaccgggattctaaccgtaagcacggac
acccgtccgactcatcatctgagtcggacggtaaaccgagtgactcggag
agttccgattcgtcggtgagcgatgacccacaggatctttatgggcgctc
ttcccgctcaaagcggtcctctgccacctacggggccatccggtcgcgcc
ccaagggtcggcgacatccgggcctcaaaccctttaagcccaccaaccct
ctgtacaggacattcctgtcctaccggtattaccggctagaagattcgtc
tttagttcggacaccgcgtaacacgggtaaagtgaaagactgcatcaagc
ggatgcagctttcacttcgtaaccggtcgtctactggggatgatccaatt
ctggtcttggatttcctacacagctttgtagcggaagaccatatactcgg
aatgaacgaaggacaagcctacgtggcgctaccctactttctacggggtt
tcgctgaagatcagtttttgtcggttcggggctcgtcgccagcctgcgaa
ggaggtgtgacctgctggcccgaggccgtgcagtacctcctgcgttccta
cgcaaccaactccgcgatacaagcggcgatactcgctttgcgagacactc
gacaacgctccggcgagctcgagaccgactactcggtacgcctgaataag
gctttccaccgttgtggtaatgtataccccgcttgggaacgctgtacgat
gttcattgatggcttggatccagccatcaagactgttgtcgcccgttaca
gggaacaagagccgaaggtgacttaccttgaactcgtacagtttgcccgc
gcagagggagatgcactacgtgcacgcaatccgggaagctggtcgaaggc
cgctaaggcattgctgctttag

Coding sequence (CDS) from alignment at tig00000168_pilon:419043..420464+

>Gchil3358.t1 ID=Gchil3358.t1|Name=Gchil3358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000168_pilon:419043..420464+ (Gracilaria chilensis NLEC103_M9 male)
atggagactcctgcaacacgcagccgttcccgccaaagcggtgatgccag
gagcactgatgttccacaggccctggctccaacaccggattcccgggaga
taccgggcaccggcactgaagacccgcagcccgattccgggttaacgacc
gtcgcaacggtggtttctccgcctccgcggttggtcgaccaatcgcggac
tgtacgcttggaagagcagctccgctccctgcgggctgctcacaataccc
tttcgagggagttcacctctttacgaggaagcctcgctaacccccctcca
agtgagttagccgaggatatccgcgtatcgcggtcggacgtcaatacact
actcgagtgttttggcgctccgtcttcctacgcagaaggtatggagaatc
gcttcgagcgtctccgaagccgaattgagtcggtcgagaggacgttaacc
tcgcccgcgaacgcggctagaccggttgtctctcaccgagagacccagtc
gcggaaccggaagagccggaaggaccgggattctaaccgtaagcacggac
acccgtccgactcatcatctgagtcggacggtaaaccgagtgactcggag
agttccgattcgtcggtgagcgatgacccacaggatctttatgggcgctc
ttcccgctcaaagcggtcctctgccacctacggggccatccggtcgcgcc
ccaagggtcggcgacatccgggcctcaaaccctttaagcccaccaaccct
ctgtacaggacattcctgtcctaccggtattaccggctagaagattcgtc
tttagttcggacaccgcgtaacacgggtaaagtgaaagactgcatcaagc
ggatgcagctttcacttcgtaaccggtcgtctactggggatgatccaatt
ctggtcttggatttcctacacagctttgtagcggaagaccatatactcgg
aatgaacgaaggacaagcctacgtggcgctaccctactttctacggggtt
tcgctgaagatcagtttttgtcggttcggggctcgtcgccagcctgcgaa
ggaggtgtgacctgctggcccgaggccgtgcagtacctcctgcgttccta
cgcaaccaactccgcgatacaagcggcgatactcgctttgcgagacactc
gacaacgctccggcgagctcgagaccgactactcggtacgcctgaataag
gctttccaccgttgtggtaatgtataccccgcttgggaacgctgtacgat
gttcattgatggcttggatccagccatcaagactgttgtcgcccgttaca
gggaacaagagccgaaggtgacttaccttgaactcgtacagtttgcccgc
gcagagggagatgcactacgtgcacgcaatccgggaagctggtcgaaggc
cgctaaggcattgctgctttag