Gchil3413.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3413.t1
Unique Name	Gchil3413.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	364

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:1013703..1014794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2K1G5
Preferred name	MCA1
PFAMs	Peptidase_C14
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006515,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009987,GO:0012501,GO:0016787,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	5.37e-63
EggNOG OGs	KOG1546@1\|root,KOG1546@2759\|Eukaryota,38EI0@33154\|Opisthokonta,3NW3X@4751\|Fungi,1GV2T@112252\|Fungi incertae sedis
Description	Mortierella verticillata NRRL 6337
COG category	DO

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3413	Gchil3413	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 1013703..1014794 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3413.t1.start1	Gchil3413.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 1013703..1013705 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3413.t1.CDS1	Gchil3413.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 1013703..1014794 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3413.t1.exon1	Gchil3413.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 1013703..1014794 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3413.t1.stop1	Gchil3413.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 1014792..1014794 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3413.t1	Gchil3413.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 1013703..1014794 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:1013703..1014794+
coding sequence from alignment at tig00000168_pilon:1013703..1014794+

mRNA sequence

>Gchil3413.t1 ID=Gchil3413.t1|Name=Gchil3413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=364bp
MQQYPPQQQPHLQQSYSGARSYRPPQPRPSSSSTHSAPRYYSNPHAPSIS
TFRPTGSKRAVLVGINYAGTKDELRGCVRDVTFVHHLLRRRFNFRDKDFI
VLTDVPSKIKNVQTGRPDRRTILDSLKWLVDRARPGESLWFSFSGHGSQV
LDTSGDESDGYDETLLSVDYKVAGPIVDDELYKIVRRLPAGARLTVLLDA
CHSGTGLDLPYQHDVFGAGTGQKISSGGRPMSLTNGLFSLTNHIFNGNPS
AALQTGLSLMNRKKKPKPPPGPDPNAGEVLLFAGCKDNQTAADTSKFAKG
LTTGAMTYALVEAIEHSTVGDWRNYNYRKLLQTMRMKLRENKMTQTPQFS
TSHPFDVSSPFVL*

spliced messenger RNA

>Gchil3413.t1 ID=Gchil3413.t1|Name=Gchil3413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000168_pilon:1013703..1014794+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACAGTATCCACCCCAACAGCAACCGCACCTCCAACAATCCTACTC
AGGCGCGCGTTCCTACCGCCCGCCCCAGCCGCGTCCCTCCTCTTCTTCCA
CCCACTCGGCCCCCCGTTACTACTCCAACCCGCACGCCCCCTCTATCAGC
ACCTTCCGCCCCACCGGCAGCAAGCGCGCCGTCCTCGTCGGCATCAACTA
CGCCGGTACCAAGGATGAGCTACGCGGTTGCGTGCGAGACGTCACCTTTG
TCCATCATCTGCTCAGGAGGCGTTTCAACTTTCGAGACAAGGACTTCATC
GTTCTCACCGACGTCCCCTCAAAAATTAAAAACGTCCAAACCGGCCGTCC
GGACCGCCGTACCATTCTCGACTCGCTCAAGTGGCTTGTGGACCGCGCGC
GCCCCGGAGAGTCGCTCTGGTTTTCCTTCTCCGGCCACGGCTCCCAGGTG
CTGGATACCAGCGGCGACGAAAGCGATGGCTACGACGAGACCCTCCTTTC
TGTCGACTACAAAGTCGCGGGGCCTATTGTGGACGATGAGCTCTACAAAA
TTGTGCGAAGACTCCCGGCTGGCGCCCGTCTCACCGTCTTGTTAGACGCT
TGCCATTCGGGCACCGGCCTGGACCTCCCGTATCAGCACGATGTCTTCGG
CGCTGGCACGGGACAGAAAATCAGCTCCGGCGGCCGACCTATGAGTTTGA
CAAATGGACTCTTCAGCCTCACCAACCACATTTTCAACGGCAACCCCTCA
GCCGCCCTGCAGACTGGTCTTAGTCTCATGAACCGCAAGAAGAAGCCCAA
GCCGCCCCCGGGCCCAGATCCCAACGCTGGCGAGGTTTTGCTTTTTGCTG
GCTGTAAGGACAATCAGACTGCTGCCGATACTTCCAAGTTTGCCAAGGGG
CTTACTACTGGTGCAATGACTTATGCGCTCGTTGAAGCCATTGAACATTC
CACTGTGGGCGACTGGCGCAATTACAACTACCGCAAGCTGTTGCAGACTA
TGAGAATGAAACTGCGTGAGAACAAAATGACTCAAACGCCGCAGTTTTCC
ACTTCTCACCCGTTTGATGTCTCATCTCCTTTTGTTCTTTAG

protein sequence of Gchil3413.t1

>Gchil3413.t1 ID=Gchil3413.t1|Name=Gchil3413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MQQYPPQQQPHLQQSYSGARSYRPPQPRPSSSSTHSAPRYYSNPHAPSIS
TFRPTGSKRAVLVGINYAGTKDELRGCVRDVTFVHHLLRRRFNFRDKDFI
VLTDVPSKIKNVQTGRPDRRTILDSLKWLVDRARPGESLWFSFSGHGSQV
LDTSGDESDGYDETLLSVDYKVAGPIVDDELYKIVRRLPAGARLTVLLDA
CHSGTGLDLPYQHDVFGAGTGQKISSGGRPMSLTNGLFSLTNHIFNGNPS
AALQTGLSLMNRKKKPKPPPGPDPNAGEVLLFAGCKDNQTAADTSKFAKG
LTTGAMTYALVEAIEHSTVGDWRNYNYRKLLQTMRMKLRENKMTQTPQFS
TSHPFDVSSPFVL*

mRNA from alignment at tig00000168_pilon:1013703..1014794+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3413.t1 ID=Gchil3413.t1|Name=Gchil3413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000168_pilon:1013703..1014794+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACAGTATCCACCCCAACAGCAACCGCACCTCCAACAATCCTACTC
AGGCGCGCGTTCCTACCGCCCGCCCCAGCCGCGTCCCTCCTCTTCTTCCA
CCCACTCGGCCCCCCGTTACTACTCCAACCCGCACGCCCCCTCTATCAGC
ACCTTCCGCCCCACCGGCAGCAAGCGCGCCGTCCTCGTCGGCATCAACTA
CGCCGGTACCAAGGATGAGCTACGCGGTTGCGTGCGAGACGTCACCTTTG
TCCATCATCTGCTCAGGAGGCGTTTCAACTTTCGAGACAAGGACTTCATC
GTTCTCACCGACGTCCCCTCAAAAATTAAAAACGTCCAAACCGGCCGTCC
GGACCGCCGTACCATTCTCGACTCGCTCAAGTGGCTTGTGGACCGCGCGC
GCCCCGGAGAGTCGCTCTGGTTTTCCTTCTCCGGCCACGGCTCCCAGGTG
CTGGATACCAGCGGCGACGAAAGCGATGGCTACGACGAGACCCTCCTTTC
TGTCGACTACAAAGTCGCGGGGCCTATTGTGGACGATGAGCTCTACAAAA
TTGTGCGAAGACTCCCGGCTGGCGCCCGTCTCACCGTCTTGTTAGACGCT
TGCCATTCGGGCACCGGCCTGGACCTCCCGTATCAGCACGATGTCTTCGG
CGCTGGCACGGGACAGAAAATCAGCTCCGGCGGCCGACCTATGAGTTTGA
CAAATGGACTCTTCAGCCTCACCAACCACATTTTCAACGGCAACCCCTCA
GCCGCCCTGCAGACTGGTCTTAGTCTCATGAACCGCAAGAAGAAGCCCAA
GCCGCCCCCGGGCCCAGATCCCAACGCTGGCGAGGTTTTGCTTTTTGCTG
GCTGTAAGGACAATCAGACTGCTGCCGATACTTCCAAGTTTGCCAAGGGG
CTTACTACTGGTGCAATGACTTATGCGCTCGTTGAAGCCATTGAACATTC
CACTGTGGGCGACTGGCGCAATTACAACTACCGCAAGCTGTTGCAGACTA
TGAGAATGAAACTGCGTGAGAACAAAATGACTCAAACGCCGCAGTTTTCC
ACTTCTCACCCGTTTGATGTCTCATCTCCTTTTGTTCTTTAG

Coding sequence (CDS) from alignment at tig00000168_pilon:1013703..1014794+

>Gchil3413.t1 ID=Gchil3413.t1|Name=Gchil3413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000168_pilon:1013703..1014794+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACAGTATCCACCCCAACAGCAACCGCACCTCCAACAATCCTACTC
AGGCGCGCGTTCCTACCGCCCGCCCCAGCCGCGTCCCTCCTCTTCTTCCA
CCCACTCGGCCCCCCGTTACTACTCCAACCCGCACGCCCCCTCTATCAGC
ACCTTCCGCCCCACCGGCAGCAAGCGCGCCGTCCTCGTCGGCATCAACTA
CGCCGGTACCAAGGATGAGCTACGCGGTTGCGTGCGAGACGTCACCTTTG
TCCATCATCTGCTCAGGAGGCGTTTCAACTTTCGAGACAAGGACTTCATC
GTTCTCACCGACGTCCCCTCAAAAATTAAAAACGTCCAAACCGGCCGTCC
GGACCGCCGTACCATTCTCGACTCGCTCAAGTGGCTTGTGGACCGCGCGC
GCCCCGGAGAGTCGCTCTGGTTTTCCTTCTCCGGCCACGGCTCCCAGGTG
CTGGATACCAGCGGCGACGAAAGCGATGGCTACGACGAGACCCTCCTTTC
TGTCGACTACAAAGTCGCGGGGCCTATTGTGGACGATGAGCTCTACAAAA
TTGTGCGAAGACTCCCGGCTGGCGCCCGTCTCACCGTCTTGTTAGACGCT
TGCCATTCGGGCACCGGCCTGGACCTCCCGTATCAGCACGATGTCTTCGG
CGCTGGCACGGGACAGAAAATCAGCTCCGGCGGCCGACCTATGAGTTTGA
CAAATGGACTCTTCAGCCTCACCAACCACATTTTCAACGGCAACCCCTCA
GCCGCCCTGCAGACTGGTCTTAGTCTCATGAACCGCAAGAAGAAGCCCAA
GCCGCCCCCGGGCCCAGATCCCAACGCTGGCGAGGTTTTGCTTTTTGCTG
GCTGTAAGGACAATCAGACTGCTGCCGATACTTCCAAGTTTGCCAAGGGG
CTTACTACTGGTGCAATGACTTATGCGCTCGTTGAAGCCATTGAACATTC
CACTGTGGGCGACTGGCGCAATTACAACTACCGCAAGCTGTTGCAGACTA
TGAGAATGAAACTGCGTGAGAACAAAATGACTCAAACGCCGCAGTTTTCC
ACTTCTCACCCGTTTGATGTCTCATCTCCTTTTGTTCTTTAG