Gchil3393.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3393.t1
Unique NameGchil3393.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:868913..869251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5691.EAN79052
PFAMsDynein_light
Max annot lvl5653|Kinetoplastida
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Evalue1.82e-36
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota,3XVQ1@5653|Kinetoplastida
DescriptionDynein light chain
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3393Gchil3393Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 868913..869251 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3393.t1.stop1Gchil3393.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 868913..868915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3393.t1.CDS1Gchil3393.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 868913..869251 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3393.t1.exon1Gchil3393.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 868913..869251 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3393.t1.start1Gchil3393.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 869249..869251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3393.t1Gchil3393.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 868913..869251 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3393.t1 ID=Gchil3393.t1|Name=Gchil3393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=113bp
MTTAAEAPGAVRGQVADQKFVPVDKQPRVVVKSADMPEDMQRKAIELALT
ALDRFELERDMAKFLKKEFDNRYQPSWHCIVGRHFGSYVTHETSGFLYFY
IEKTAVLLFRSG*
back to top

spliced messenger RNA

>Gchil3393.t1 ID=Gchil3393.t1|Name=Gchil3393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp|location=Sequence derived from alignment at tig00000168_pilon:868913..869251- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACTGCAGCCGAAGCGCCCGGCGCAGTCCGCGGCCAAGTGGCGGA
CCAAAAATTCGTACCAGTAGACAAGCAGCCCCGCGTCGTCGTTAAGTCCG
CCGATATGCCGGAGGACATGCAGCGTAAAGCCATTGAGCTTGCGCTGACA
GCGCTTGATCGCTTCGAGCTTGAGCGCGATATGGCCAAGTTTCTGAAGAA
GGAGTTTGACAATCGCTATCAACCCTCCTGGCATTGCATAGTGGGCCGCC
ATTTTGGAAGCTATGTCACACACGAAACTTCGGGATTCCTGTACTTCTAC
ATCGAAAAGACAGCCGTTTTGTTATTCCGCAGTGGATAG
back to top

protein sequence of Gchil3393.t1

>Gchil3393.t1 ID=Gchil3393.t1|Name=Gchil3393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=113bp
MTTAAEAPGAVRGQVADQKFVPVDKQPRVVVKSADMPEDMQRKAIELALT
ALDRFELERDMAKFLKKEFDNRYQPSWHCIVGRHFGSYVTHETSGFLYFY
IEKTAVLLFRSG*
back to top

mRNA from alignment at tig00000168_pilon:868913..869251-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3393.t1 ID=Gchil3393.t1|Name=Gchil3393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp|location=Sequence derived from alignment at tig00000168_pilon:868913..869251- (Gracilaria chilensis NLEC103_M9 male)
ATGACGACTGCAGCCGAAGCGCCCGGCGCAGTCCGCGGCCAAGTGGCGGA
CCAAAAATTCGTACCAGTAGACAAGCAGCCCCGCGTCGTCGTTAAGTCCG
CCGATATGCCGGAGGACATGCAGCGTAAAGCCATTGAGCTTGCGCTGACA
GCGCTTGATCGCTTCGAGCTTGAGCGCGATATGGCCAAGTTTCTGAAGAA
GGAGTTTGACAATCGCTATCAACCCTCCTGGCATTGCATAGTGGGCCGCC
ATTTTGGAAGCTATGTCACACACGAAACTTCGGGATTCCTGTACTTCTAC
ATCGAAAAGACAGCCGTTTTGTTATTCCGCAGTGGATAG
back to top

Coding sequence (CDS) from alignment at tig00000168_pilon:868913..869251-

>Gchil3393.t1 ID=Gchil3393.t1|Name=Gchil3393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=339bp|location=Sequence derived from alignment at tig00000168_pilon:868913..869251- (Gracilaria chilensis NLEC103_M9 male)
ATGACGACTGCAGCCGAAGCGCCCGGCGCAGTCCGCGGCCAAGTGGCGGA
CCAAAAATTCGTACCAGTAGACAAGCAGCCCCGCGTCGTCGTTAAGTCCG
CCGATATGCCGGAGGACATGCAGCGTAAAGCCATTGAGCTTGCGCTGACA
GCGCTTGATCGCTTCGAGCTTGAGCGCGATATGGCCAAGTTTCTGAAGAA
GGAGTTTGACAATCGCTATCAACCCTCCTGGCATTGCATAGTGGGCCGCC
ATTTTGGAAGCTATGTCACACACGAAACTTCGGGATTCCTGTACTTCTAC
ATCGAAAAGACAGCCGTTTTGTTATTCCGCAGTGGATAG
back to top