Gchil3367.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3367.t1
Unique NameGchil3367.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:538062..539003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1168067.JAGP01000001_gene975
PFAMsMethyltransf_25
Max annot lvl72273|Thiotrichales
Evalue1.78e-33
EggNOG OGsCOG0220@1|root,COG0607@1|root,COG0220@2|Bacteria,COG0607@2|Bacteria,1QVWK@1224|Proteobacteria,1S7J8@1236|Gammaproteobacteria,460TB@72273|Thiotrichales
DescriptionTellurite resistance protein TehB
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3367Gchil3367Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 538062..539003 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3367.t1.stop1Gchil3367.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 538062..538064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3367.t1.CDS1Gchil3367.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 538062..539003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3367.t1.exon1Gchil3367.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 538062..539003 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3367.t1.start1Gchil3367.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 539001..539003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3367.t1Gchil3367.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 538062..539003 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3367.t1 ID=Gchil3367.t1|Name=Gchil3367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=314bp
MGFPSSHNPEVPALSKSQWLSAFILLPVHMKPPFIDIRRKLDFEKTHVAH
ASSFPFSGEESIDSRLHELPAVSGQSRIAVFGDPDNSSVVSKKLERRGFP
CPILLNEEDISSLPRAQGPSRALWSPATILIEELPRLHAHSMRTALDIGC
GSGRDATFLAFAGFFVTAVDRDSKLTDKASKLCLRNQYHSLLPSPRANGK
VITMTRTFGANLAEDRDFLRRHAAGLLIVVRFLRRGVLELLHEGVRSGGL
VIYEHFLTGCERFGSPAKPSQMLRRGELREVFSPARNFTIIRDEECSLQD
GRPVVRFVALKSV*
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spliced messenger RNA

>Gchil3367.t1 ID=Gchil3367.t1|Name=Gchil3367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000168_pilon:538062..539003- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTTCCGAGCTCTCACAATCCTGAAGTCCCTGCTTTGAGTAAGTC
ACAATGGCTGTCGGCATTCATTCTTCTCCCAGTGCATATGAAACCACCCT
TTATCGACATTCGCCGTAAGCTGGACTTTGAAAAAACGCACGTGGCTCAT
GCATCAAGCTTTCCTTTCTCTGGAGAAGAGAGTATAGATTCCAGGCTGCA
TGAGCTTCCGGCAGTCTCTGGTCAGTCTCGCATCGCAGTTTTTGGGGATC
CGGATAATAGTTCTGTCGTTTCAAAGAAACTGGAAAGAAGAGGCTTTCCT
TGCCCGATTTTATTAAACGAGGAGGACATAAGCAGTCTCCCTCGAGCGCA
AGGTCCCAGTCGGGCCCTGTGGTCTCCGGCCACAATTCTGATTGAAGAAT
TACCTCGACTGCATGCACATTCTATGCGTACAGCTCTCGATATTGGTTGT
GGAAGTGGGCGTGATGCAACTTTCCTGGCCTTTGCAGGGTTCTTTGTGAC
AGCAGTTGACCGAGATTCTAAATTGACAGACAAGGCGAGCAAGCTCTGCT
TGAGAAACCAATACCACTCGCTCTTACCAAGTCCTCGCGCTAACGGGAAA
GTCATCACCATGACACGCACTTTCGGGGCCAACCTCGCTGAAGATCGCGA
TTTCCTGCGAAGGCATGCTGCTGGGCTGCTGATTGTAGTTCGTTTTCTGC
GTCGAGGCGTTCTGGAGCTTCTGCATGAGGGAGTACGATCCGGTGGGCTA
GTAATTTACGAGCATTTTCTGACTGGATGTGAACGGTTTGGGTCCCCCGC
AAAGCCTTCTCAAATGCTACGCCGAGGCGAACTTCGGGAGGTGTTCAGCC
CAGCGAGGAACTTCACAATTATCAGGGACGAAGAATGCTCTTTACAAGAC
GGGCGCCCTGTGGTTAGATTTGTGGCTCTGAAGAGTGTTTAG
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protein sequence of Gchil3367.t1

>Gchil3367.t1 ID=Gchil3367.t1|Name=Gchil3367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=314bp
MGFPSSHNPEVPALSKSQWLSAFILLPVHMKPPFIDIRRKLDFEKTHVAH
ASSFPFSGEESIDSRLHELPAVSGQSRIAVFGDPDNSSVVSKKLERRGFP
CPILLNEEDISSLPRAQGPSRALWSPATILIEELPRLHAHSMRTALDIGC
GSGRDATFLAFAGFFVTAVDRDSKLTDKASKLCLRNQYHSLLPSPRANGK
VITMTRTFGANLAEDRDFLRRHAAGLLIVVRFLRRGVLELLHEGVRSGGL
VIYEHFLTGCERFGSPAKPSQMLRRGELREVFSPARNFTIIRDEECSLQD
GRPVVRFVALKSV*
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mRNA from alignment at tig00000168_pilon:538062..539003-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3367.t1 ID=Gchil3367.t1|Name=Gchil3367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000168_pilon:538062..539003- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTTTCCGAGCTCTCACAATCCTGAAGTCCCTGCTTTGAGTAAGTC
ACAATGGCTGTCGGCATTCATTCTTCTCCCAGTGCATATGAAACCACCCT
TTATCGACATTCGCCGTAAGCTGGACTTTGAAAAAACGCACGTGGCTCAT
GCATCAAGCTTTCCTTTCTCTGGAGAAGAGAGTATAGATTCCAGGCTGCA
TGAGCTTCCGGCAGTCTCTGGTCAGTCTCGCATCGCAGTTTTTGGGGATC
CGGATAATAGTTCTGTCGTTTCAAAGAAACTGGAAAGAAGAGGCTTTCCT
TGCCCGATTTTATTAAACGAGGAGGACATAAGCAGTCTCCCTCGAGCGCA
AGGTCCCAGTCGGGCCCTGTGGTCTCCGGCCACAATTCTGATTGAAGAAT
TACCTCGACTGCATGCACATTCTATGCGTACAGCTCTCGATATTGGTTGT
GGAAGTGGGCGTGATGCAACTTTCCTGGCCTTTGCAGGGTTCTTTGTGAC
AGCAGTTGACCGAGATTCTAAATTGACAGACAAGGCGAGCAAGCTCTGCT
TGAGAAACCAATACCACTCGCTCTTACCAAGTCCTCGCGCTAACGGGAAA
GTCATCACCATGACACGCACTTTCGGGGCCAACCTCGCTGAAGATCGCGA
TTTCCTGCGAAGGCATGCTGCTGGGCTGCTGATTGTAGTTCGTTTTCTGC
GTCGAGGCGTTCTGGAGCTTCTGCATGAGGGAGTACGATCCGGTGGGCTA
GTAATTTACGAGCATTTTCTGACTGGATGTGAACGGTTTGGGTCCCCCGC
AAAGCCTTCTCAAATGCTACGCCGAGGCGAACTTCGGGAGGTGTTCAGCC
CAGCGAGGAACTTCACAATTATCAGGGACGAAGAATGCTCTTTACAAGAC
GGGCGCCCTGTGGTTAGATTTGTGGCTCTGAAGAGTGTTTAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:538062..539003-

>Gchil3367.t1 ID=Gchil3367.t1|Name=Gchil3367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000168_pilon:538062..539003- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTTTCCGAGCTCTCACAATCCTGAAGTCCCTGCTTTGAGTAAGTC
ACAATGGCTGTCGGCATTCATTCTTCTCCCAGTGCATATGAAACCACCCT
TTATCGACATTCGCCGTAAGCTGGACTTTGAAAAAACGCACGTGGCTCAT
GCATCAAGCTTTCCTTTCTCTGGAGAAGAGAGTATAGATTCCAGGCTGCA
TGAGCTTCCGGCAGTCTCTGGTCAGTCTCGCATCGCAGTTTTTGGGGATC
CGGATAATAGTTCTGTCGTTTCAAAGAAACTGGAAAGAAGAGGCTTTCCT
TGCCCGATTTTATTAAACGAGGAGGACATAAGCAGTCTCCCTCGAGCGCA
AGGTCCCAGTCGGGCCCTGTGGTCTCCGGCCACAATTCTGATTGAAGAAT
TACCTCGACTGCATGCACATTCTATGCGTACAGCTCTCGATATTGGTTGT
GGAAGTGGGCGTGATGCAACTTTCCTGGCCTTTGCAGGGTTCTTTGTGAC
AGCAGTTGACCGAGATTCTAAATTGACAGACAAGGCGAGCAAGCTCTGCT
TGAGAAACCAATACCACTCGCTCTTACCAAGTCCTCGCGCTAACGGGAAA
GTCATCACCATGACACGCACTTTCGGGGCCAACCTCGCTGAAGATCGCGA
TTTCCTGCGAAGGCATGCTGCTGGGCTGCTGATTGTAGTTCGTTTTCTGC
GTCGAGGCGTTCTGGAGCTTCTGCATGAGGGAGTACGATCCGGTGGGCTA
GTAATTTACGAGCATTTTCTGACTGGATGTGAACGGTTTGGGTCCCCCGC
AAAGCCTTCTCAAATGCTACGCCGAGGCGAACTTCGGGAGGTGTTCAGCC
CAGCGAGGAACTTCACAATTATCAGGGACGAAGAATGCTCTTTACAAGAC
GGGCGCCCTGTGGTTAGATTTGTGGCTCTGAAGAGTGTTTAG
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