Gchil3307.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3307.t1
Unique Name	Gchil3307.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	695

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:97290..100121 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	321327.CYA_2818
Preferred name	prc
PFAMs	PDZ,PDZ_2,Peptidase_S41,Tricorn_C1
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03797
Evalue	1.62e-39
EggNOG OGs	COG0793@1\|root,COG0793@2\|Bacteria,1G1YJ@1117\|Cyanobacteria,1GYEZ@1129\|Synechococcus
EC	3.4.21.102
Description	Belongs to the peptidase S41A family
COG category	M
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3307	Gchil3307	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 97290..100121 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3307.t1	Gchil3307.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 97290..100121 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3307.t1.start1	Gchil3307.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 97290..97292 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3307.t1.CDS1	Gchil3307.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 97290..98090 +
Gchil3307.t1.CDS2	Gchil3307.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 98838..100121 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3307.t1.exon1	Gchil3307.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 97290..98090 +
Gchil3307.t1.exon2	Gchil3307.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 98838..100121 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3307.t1.intron1	Gchil3307.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00000168_pilon 98091..98837 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3307.t1.stop1	Gchil3307.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 100119..100121 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:97290..100121+
coding sequence from alignment at tig00000168_pilon:97290..100121+

mRNA sequence

>Gchil3307.t1 ID=Gchil3307.t1|Name=Gchil3307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=695bp
MSCFCSVCGSDGRYQCARCDARYCSVPCYRAHSPSCVRAFSRQASAQLAG
VRVSHRERQRFQRLLGRLLRQPQPQLFYGDRAHDDEQLLGDETNREEQHV
AECLEHLAVDMEQMHLTYEQVLERLPSELADKFEHMLRTGELDAMVKPWR
PWWQPCGGDEHAEHAEHAEHAEHAEHEQGEACERPPLPKAEQLLVAPEVA
QRTGSALLLNSVVDVVSAVCVSERLHDGDCVSDARHAAKTMWALSAALHS
DARHATVEQACAAFIQTPPDDADGGKRRAQWRRQVLHDAYHTLLERYVDH
ARVHWPRVRRHLQRRAVAAAESDLQLQRTLHWLLARCHDPFTRYVPPHEL
HAMRHDIDGTTTGVGIELGAEQTAARWWRRGVRHLVVQHVVRASPAARAG
LRLGDRITAIDLRPTARMHEAEARARLAGEPGRTVMLCFHRAGVHACVQL
RRSRRVRSVSVWARRIVVRDVGDVAYVRVREFSRYTARDAAVALRALRPR
PEEHDAHVALCVLDLRANGGGLVERAVQLAAMFVPPRRVLVRFAARDGKQ
WAERGGARHIMRATPVLVLVDGATASAAELVTAALRDNCRAVVLGARTYG
KASVQAIVPLSEGAGAIAVTVARYATPRGEPVAGCGLQPDRVCAHLPPGE
RAVHRLFARGAQRRMRWIHHRLRMCAAAGDFGEEVATVSSNKND*

spliced messenger RNA

>Gchil3307.t1 ID=Gchil3307.t1|Name=Gchil3307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2085bp|location=Sequence derived from alignment at tig00000168_pilon:97290..100121+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGCTTCTGCTCAGTGTGCGGCAGTGACGGGCGGTACCAATGCGC
GCGCTGCGACGCGCGCTACTGCTCCGTGCCGTGCTACCGCGCGCACTCGC
CGTCGTGCGTGCGCGCGTTTTCGCGCCAGGCGTCGGCGCAGCTGGCCGGC
GTGCGCGTGTCGCACCGCGAGAGGCAACGTTTTCAGCGCTTGCTTGGGCG
TCTGCTGCGGCAGCCGCAGCCGCAGCTGTTCTATGGCGACCGTGCCCATG
ATGATGAGCAATTGCTTGGCGATGAAACCAATCGCGAAGAGCAGCACGTT
GCAGAGTGTCTCGAACACCTGGCGGTGGACATGGAGCAAATGCATTTGAC
GTACGAGCAGGTGCTGGAAAGACTGCCCAGCGAGCTGGCCGACAAATTCG
AGCACATGTTGAGGACAGGCGAGCTGGACGCCATGGTGAAGCCGTGGCGG
CCGTGGTGGCAACCCTGCGGCGGGGACgagcacgcggagcacgcggagca
cgcggagcacgcggagcacgcggagcacgAGCAAGGGGAAGCATGCGAGC
GGCCGCCGCTTCCAAAGGCGGAGCAGCTGCTGGTGGCGCCGGAGGTGGCG
CAGCGCACAGGCTCGGCGCTGCTGCTCAACAGCGTAGTGGACGTGGTAAG
CGCCGTGTGCGTGAGCGAACGGCTGCACGACGGCGACTGCGTGTCGGACG
CGCGACATGCAGCCAAGACCATGTGGGCACTATCGGCAGCACTGCACTCG
GACGCGCGCCACGCCACGGTGGAGCAGGCGTGCGCGGCGTTCATACAGAC
GCCGCCCGACGATGCCGACGGCGGCAAGCGCCGCGCGCAGTGGCGCCGCC
AAGTGCTGCACGATGCGTACCACACGCTGCTCGAGCGCTACGTGGATCAC
GCCCGCGTGCATTGGCCGCGCGTGCGTCGTcacctgcagcgtcgcgccgt
cgccgccgctgagagcgatctgcagctgcagcgcacgctgcaTTGGCTGC
TGGCGCGCTGTCATGACCCCTTCACGCGCTACGTGCCGCCGCACGAGCTG
CACGCCATGCGCCACGACATTGACGGCACCACCACCGGCGTGGGAATCGA
GCTGGGAGCCGAGCAAACCGCAGCGCGCTGGTGGCGCCGCGGCGTGCGCC
ATCTCGTCGTGCAGCACGTCGTACGTGCTTCGCCGGCCGCACGCGCCGGT
CTGCGTCTAGGCGACCGCATCACCGCCATCGACTTGCGCCCCACTGCGCG
CATGCACGAGGCAGAGGCGCGCGCGCGTCTCGCCGGCGAGCCGGGGCGCA
CCGTCATGCTATGTTTCCATCGTGCCGGCGTTCACGCTTGCGTGCAACTG
CGCCGCTCCCGTCGCGTGCGATCTGTCAGCGTGTGGGCGCGTCGCATCGT
CGTACGCGATGTGGGTGATGTGGCTTATGTGCGCGTGCGTGAGTTCTCTC
GATATACCGCTCGCGACGCCGCTGTCGCGCTGCGCGCGCTGCGTCCACGC
CCAGAAGAGCATGATGCGCACGTCGCGCTATGCGTGCTAGACCTGCGCGC
TAACGGCGGCGGGCTGGTGGAACGTGCCGTGCAATTAGCCGCAATGTTCG
TGCCGCCGCGCCGTGTGTTGGTGCGTTTTGCGGCGCGCGACGGTAAACAA
TGGGCGGAGCGCGGCGGCGCGCGTCACATCATGCGCGCCACGCCCGTGTT
GGTGTTGGTGGACGGCGCCACGGCCAGCGCCGCCGAGCTGGTCACCGCCG
CGTTACGCGATAACTGTCGCGCCGTCGTGCTTGGCGCGCGCACGTATGGG
AAAGCGTCCGTGCAGGCCATCGTGCCGCTGAGTGAGGGCGCCGGCGCTAT
CGCCGTTACTGTTGCGCGCTATGCTACGCCGCGCGGCGAGCCTGTCGCCG
GCTGCGGGCTGCAGCCGGATCGTGTGTGTGCGCATCTGCCGCCGGGCGAG
CGTGCAGTGCATCGTCTTTTTGCGCGAGGCGCGCAGCGCCGGATGCGATG
GATTCACCATCGGCTGCGCATGTGCGCGGCGGCTGGCGACTTTGGCGAGG
AAGTTGCGACTGTTTCTTCAAACAAGAACGATTAG

protein sequence of Gchil3307.t1

>Gchil3307.t1 ID=Gchil3307.t1|Name=Gchil3307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=695bp
MSCFCSVCGSDGRYQCARCDARYCSVPCYRAHSPSCVRAFSRQASAQLAG
VRVSHRERQRFQRLLGRLLRQPQPQLFYGDRAHDDEQLLGDETNREEQHV
AECLEHLAVDMEQMHLTYEQVLERLPSELADKFEHMLRTGELDAMVKPWR
PWWQPCGGDEHAEHAEHAEHAEHAEHEQGEACERPPLPKAEQLLVAPEVA
QRTGSALLLNSVVDVVSAVCVSERLHDGDCVSDARHAAKTMWALSAALHS
DARHATVEQACAAFIQTPPDDADGGKRRAQWRRQVLHDAYHTLLERYVDH
ARVHWPRVRRHLQRRAVAAAESDLQLQRTLHWLLARCHDPFTRYVPPHEL
HAMRHDIDGTTTGVGIELGAEQTAARWWRRGVRHLVVQHVVRASPAARAG
LRLGDRITAIDLRPTARMHEAEARARLAGEPGRTVMLCFHRAGVHACVQL
RRSRRVRSVSVWARRIVVRDVGDVAYVRVREFSRYTARDAAVALRALRPR
PEEHDAHVALCVLDLRANGGGLVERAVQLAAMFVPPRRVLVRFAARDGKQ
WAERGGARHIMRATPVLVLVDGATASAAELVTAALRDNCRAVVLGARTYG
KASVQAIVPLSEGAGAIAVTVARYATPRGEPVAGCGLQPDRVCAHLPPGE
RAVHRLFARGAQRRMRWIHHRLRMCAAAGDFGEEVATVSSNKND*

mRNA from alignment at tig00000168_pilon:97290..100121+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3307.t1 ID=Gchil3307.t1|Name=Gchil3307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2832bp|location=Sequence derived from alignment at tig00000168_pilon:97290..100121+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTGCTTCTGCTCAGTGTGCGGCAGTGACGGGCGGTACCAATGCGC
GCGCTGCGACGCGCGCTACTGCTCCGTGCCGTGCTACCGCGCGCACTCGC
CGTCGTGCGTGCGCGCGTTTTCGCGCCAGGCGTCGGCGCAGCTGGCCGGC
GTGCGCGTGTCGCACCGCGAGAGGCAACGTTTTCAGCGCTTGCTTGGGCG
TCTGCTGCGGCAGCCGCAGCCGCAGCTGTTCTATGGCGACCGTGCCCATG
ATGATGAGCAATTGCTTGGCGATGAAACCAATCGCGAAGAGCAGCACGTT
GCAGAGTGTCTCGAACACCTGGCGGTGGACATGGAGCAAATGCATTTGAC
GTACGAGCAGGTGCTGGAAAGACTGCCCAGCGAGCTGGCCGACAAATTCG
AGCACATGTTGAGGACAGGCGAGCTGGACGCCATGGTGAAGCCGTGGCGG
CCGTGGTGGCAACCCTGCGGCGGGGACgagcacgcggagcacgcggagca
cgcggagcacgcggagcacgcggagcacgAGCAAGGGGAAGCATGCGAGC
GGCCGCCGCTTCCAAAGGCGGAGCAGCTGCTGGTGGCGCCGGAGGTGGCG
CAGCGCACAGGCTCGGCGCTGCTGCTCAACAGCGTAGTGGACGTGGTAAG
CGCCGTGTGCGTGAGCGAACGGCTGCACGACGGCGACTGCGTGTCGGACG
CGCGACATGCAGCCAAGACCATGTGGGCACTATCGGCAGCACTGCACTCG
GACGCGCGCCACGCCACGGTGGAGCAGGCGTGCGCGGCGTTCATACAGAC
GGTGCTTgaggcgcgcggcgcggagacgacggcactacgcgcgctacgcg
acgcgGCATGCGTGCTGGACGGAGGCATCGACGGCGTGGCACGCAGCTTG
TTCCTAGCTCAGACCGTGCTGCAgcgcgcacgcggccaagtgcgcgatgc
gcgcgcgcgtcgcgccgtctcgctacgcgTTAGAAAGATATCCTTCATGC
TGGCGTGGACACTTTGTCAGCCCGCGGCCGCAATGCGCGCCGCGGCCGCG
CGAGTGCGCACCTTCGTCGAGCTGCTTCACGGTCGCTGTGTCGAGTTGCG
cgtcgccgccgccgccgtacgtctgctgccgctgccagaccgacgccact
gcgcgccgccgccTATGTAAGCCGCGCGCGTTTACAGACGCATCTCCCCG
CCAGCTCTTATCTGCCGATCGCGTTCTGCACCTTGTGGTTGCATGGGTAT
GAGCGTGCGCCCGCGCGGCCGCGGAGAAAGGCAGACCATGCGCGTGCGGC
GGCTGCATCATTCGTGcgcgcacgccgctgcgttgacgcgcgtcgctgtc
gcgcgcgccgccgttgttgccgttgccgccaccgttgccgccgtcgccgt
cgtggcgccgtcgccggttgccgcgcacgtcgtGTACGCCGCTGCGCATG
TTGCccgtctgcatcgccgccgccgtcgccgccaccacctccgcgcagcg
tctgccgtgctgctaccgctgccgctactgTGGGAGCGCGACGCGCAGCC
GCCCGACGATGCCGACGGCGGCAAGCGCCGCGCGCAGTGGCGCCGCCAAG
TGCTGCACGATGCGTACCACACGCTGCTCGAGCGCTACGTGGATCACGCC
CGCGTGCATTGGCCGCGCGTGCGTCGTcacctgcagcgtcgcgccgtcgc
cgccgctgagagcgatctgcagctgcagcgcacgctgcaTTGGCTGCTGG
CGCGCTGTCATGACCCCTTCACGCGCTACGTGCCGCCGCACGAGCTGCAC
GCCATGCGCCACGACATTGACGGCACCACCACCGGCGTGGGAATCGAGCT
GGGAGCCGAGCAAACCGCAGCGCGCTGGTGGCGCCGCGGCGTGCGCCATC
TCGTCGTGCAGCACGTCGTACGTGCTTCGCCGGCCGCACGCGCCGGTCTG
CGTCTAGGCGACCGCATCACCGCCATCGACTTGCGCCCCACTGCGCGCAT
GCACGAGGCAGAGGCGCGCGCGCGTCTCGCCGGCGAGCCGGGGCGCACCG
TCATGCTATGTTTCCATCGTGCCGGCGTTCACGCTTGCGTGCAACTGCGC
CGCTCCCGTCGCGTGCGATCTGTCAGCGTGTGGGCGCGTCGCATCGTCGT
ACGCGATGTGGGTGATGTGGCTTATGTGCGCGTGCGTGAGTTCTCTCGAT
ATACCGCTCGCGACGCCGCTGTCGCGCTGCGCGCGCTGCGTCCACGCCCA
GAAGAGCATGATGCGCACGTCGCGCTATGCGTGCTAGACCTGCGCGCTAA
CGGCGGCGGGCTGGTGGAACGTGCCGTGCAATTAGCCGCAATGTTCGTGC
CGCCGCGCCGTGTGTTGGTGCGTTTTGCGGCGCGCGACGGTAAACAATGG
GCGGAGCGCGGCGGCGCGCGTCACATCATGCGCGCCACGCCCGTGTTGGT
GTTGGTGGACGGCGCCACGGCCAGCGCCGCCGAGCTGGTCACCGCCGCGT
TACGCGATAACTGTCGCGCCGTCGTGCTTGGCGCGCGCACGTATGGGAAA
GCGTCCGTGCAGGCCATCGTGCCGCTGAGTGAGGGCGCCGGCGCTATCGC
CGTTACTGTTGCGCGCTATGCTACGCCGCGCGGCGAGCCTGTCGCCGGCT
GCGGGCTGCAGCCGGATCGTGTGTGTGCGCATCTGCCGCCGGGCGAGCGT
GCAGTGCATCGTCTTTTTGCGCGAGGCGCGCAGCGCCGGATGCGATGGAT
TCACCATCGGCTGCGCATGTGCGCGGCGGCTGGCGACTTTGGCGAGGAAG
TTGCGACTGTTTCTTCAAACAAGAACGATTAG

Coding sequence (CDS) from alignment at tig00000168_pilon:97290..100121+

>Gchil3307.t1 ID=Gchil3307.t1|Name=Gchil3307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2085bp|location=Sequence derived from alignment at tig00000168_pilon:97290..100121+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTGCTTCTGCTCAGTGTGCGGCAGTGACGGGCGGTACCAATGCGC
GCGCTGCGACGCGCGCTACTGCTCCGTGCCGTGCTACCGCGCGCACTCGC
CGTCGTGCGTGCGCGCGTTTTCGCGCCAGGCGTCGGCGCAGCTGGCCGGC
GTGCGCGTGTCGCACCGCGAGAGGCAACGTTTTCAGCGCTTGCTTGGGCG
TCTGCTGCGGCAGCCGCAGCCGCAGCTGTTCTATGGCGACCGTGCCCATG
ATGATGAGCAATTGCTTGGCGATGAAACCAATCGCGAAGAGCAGCACGTT
GCAGAGTGTCTCGAACACCTGGCGGTGGACATGGAGCAAATGCATTTGAC
GTACGAGCAGGTGCTGGAAAGACTGCCCAGCGAGCTGGCCGACAAATTCG
AGCACATGTTGAGGACAGGCGAGCTGGACGCCATGGTGAAGCCGTGGCGG
CCGTGGTGGCAACCCTGCGGCGGGGACgagcacgcggagcacgcggagca
cgcggagcacgcggagcacgcggagcacgAGCAAGGGGAAGCATGCGAGC
GGCCGCCGCTTCCAAAGGCGGAGCAGCTGCTGGTGGCGCCGGAGGTGGCG
CAGCGCACAGGCTCGGCGCTGCTGCTCAACAGCGTAGTGGACGTGGTAAG
CGCCGTGTGCGTGAGCGAACGGCTGCACGACGGCGACTGCGTGTCGGACG
CGCGACATGCAGCCAAGACCATGTGGGCACTATCGGCAGCACTGCACTCG
GACGCGCGCCACGCCACGGTGGAGCAGGCGTGCGCGGCGTTCATACAGAC
GCCGCCCGACGATGCCGACGGCGGCAAGCGCCGCGCGCAGTGGCGCCGCC
AAGTGCTGCACGATGCGTACCACACGCTGCTCGAGCGCTACGTGGATCAC
GCCCGCGTGCATTGGCCGCGCGTGCGTCGTcacctgcagcgtcgcgccgt
cgccgccgctgagagcgatctgcagctgcagcgcacgctgcaTTGGCTGC
TGGCGCGCTGTCATGACCCCTTCACGCGCTACGTGCCGCCGCACGAGCTG
CACGCCATGCGCCACGACATTGACGGCACCACCACCGGCGTGGGAATCGA
GCTGGGAGCCGAGCAAACCGCAGCGCGCTGGTGGCGCCGCGGCGTGCGCC
ATCTCGTCGTGCAGCACGTCGTACGTGCTTCGCCGGCCGCACGCGCCGGT
CTGCGTCTAGGCGACCGCATCACCGCCATCGACTTGCGCCCCACTGCGCG
CATGCACGAGGCAGAGGCGCGCGCGCGTCTCGCCGGCGAGCCGGGGCGCA
CCGTCATGCTATGTTTCCATCGTGCCGGCGTTCACGCTTGCGTGCAACTG
CGCCGCTCCCGTCGCGTGCGATCTGTCAGCGTGTGGGCGCGTCGCATCGT
CGTACGCGATGTGGGTGATGTGGCTTATGTGCGCGTGCGTGAGTTCTCTC
GATATACCGCTCGCGACGCCGCTGTCGCGCTGCGCGCGCTGCGTCCACGC
CCAGAAGAGCATGATGCGCACGTCGCGCTATGCGTGCTAGACCTGCGCGC
TAACGGCGGCGGGCTGGTGGAACGTGCCGTGCAATTAGCCGCAATGTTCG
TGCCGCCGCGCCGTGTGTTGGTGCGTTTTGCGGCGCGCGACGGTAAACAA
TGGGCGGAGCGCGGCGGCGCGCGTCACATCATGCGCGCCACGCCCGTGTT
GGTGTTGGTGGACGGCGCCACGGCCAGCGCCGCCGAGCTGGTCACCGCCG
CGTTACGCGATAACTGTCGCGCCGTCGTGCTTGGCGCGCGCACGTATGGG
AAAGCGTCCGTGCAGGCCATCGTGCCGCTGAGTGAGGGCGCCGGCGCTAT
CGCCGTTACTGTTGCGCGCTATGCTACGCCGCGCGGCGAGCCTGTCGCCG
GCTGCGGGCTGCAGCCGGATCGTGTGTGTGCGCATCTGCCGCCGGGCGAG
CGTGCAGTGCATCGTCTTTTTGCGCGAGGCGCGCAGCGCCGGATGCGATG
GATTCACCATCGGCTGCGCATGTGCGCGGCGGCTGGCGACTTTGGCGAGG
AAGTTGCGACTGTTTCTTCAAACAAGAACGATTAG