Gchil3360.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3360.t1
Unique Name	Gchil3360.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:421196..422464 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3360	Gchil3360	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 421196..422464 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3360.t1.start1	Gchil3360.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 421196..421198 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3360.t1.CDS1	Gchil3360.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 421196..422464 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3360.t1.exon1	Gchil3360.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 421196..422464 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3360.t1.stop1	Gchil3360.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 422462..422464 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3360.t1	Gchil3360.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 421196..422464 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:421196..422464+
coding sequence from alignment at tig00000168_pilon:421196..422464+

mRNA sequence

>Gchil3360.t1 ID=Gchil3360.t1|Name=Gchil3360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp
MPRSPVKILTRKDTADADSKHLGVLRRPWIRIRNNRIPDRVLVMAKRNYK
VYADLGLHTQFMVRYLTVLDTGAGPNVIVESVLPPPLRSLIRSETVPDVS
DANNNPLKTAGVIDLVVRLGRMVVKLTFIVCRSLAAPVILGCDYCDRFVD
AIRPRLKQVELEDGSTVPIVCQPLKRASRKHVPLPAAQEPTPANRNCTKL
RVASSVTIPPESQVMVSVSSRQHGLRVVQPLPSLYEKFQLTVANGIVQVT
PNSPFRVLVANLGKAPQTLAKNQVIGSVTLHPLAMLPTKVTAAEVLGITP
STEDGLPVSGAETSGEAQQLALDKTVKTDAFTTSLVPTPDTRAQPTSYDK
IDPIKALEDLDLSHVPVSHRDRLRGMLREFTTMWDGSLGEINTTEHRIDL
LPDARPVAQPPYRAGPKAREEE*

spliced messenger RNA

>Gchil3360.t1 ID=Gchil3360.t1|Name=Gchil3360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000168_pilon:421196..422464+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcctcgctccccggtgaaaatcctgacaaggaaggacaccgcagacgc
ggactctaaacacctcggtgttttgcgtcgaccgtggatacggattagaa
ataaccggatcccggatagagtcttggtaatggccaagcgtaactacaag
gtttacgctgaccttggtctgcacacgcagtttatggtgagatatctcac
ggtcctggatacaggtgctgggccgaacgttattgtggaatcggttttac
ccccgccattgcggtcactcatccgttctgaaacggtacccgacgtctca
gacgccaataacaacccgttgaaaacggctggtgtgatcgacctggtcgt
caggctagggcggatggtggttaaactaacttttattgtgtgccgctctc
tggccgcgccagttatactgggatgtgactactgcgacaggtttgtcgac
gccatccgcccacgccttaagcaggtggaacttgaggacggatcgaccgt
ccccattgtttgtcaaccgctgaagcgggcatcgaggaaacacgttcctc
tacctgctgcgcaggaacccacaccggcgaaccggaattgtacgaagcta
cgcgttgcctcgtcagtcaccatacccccggagagccaggttatggtttc
agtcagttcccgtcaacacggtcttcgggttgttcagcccttgccctcgt
tgtacgagaaatttcagttaaccgttgcgaacggaatcgtgcaagtcacg
ccaaattcccctttcagggtgttggttgccaatctgggaaaggctcccca
gacgctggcaaagaaccaagtcattgggtctgtgacgctgcacccgctcg
cgatgctccctacaaaggtgacggctgccgaagtactcggaataactccc
tctaccgaggatggtctcccggtatccggtgcagaaacctccggggaggc
acagcagttggcgctcgataaaaccgtcaagacggatgcatttacgacct
cgttggttcccacacctgacaccagggcacagcctacgagctacgataag
atagacccgatcaaggccctcgaggacctggacctgagtcatgtaccggt
ctcacatcgggaccgcttacgcggaatgctacgcgagtttaccacaatgt
gggacggctcactgggtgagatcaatacaaccgaacatcggatagacttg
ctaccggacgcacgtccggttgcacaacccccttacagggcgggaccgaa
agctcgggaggaggaataa

protein sequence of Gchil3360.t1

>Gchil3360.t1 ID=Gchil3360.t1|Name=Gchil3360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=423bp
MPRSPVKILTRKDTADADSKHLGVLRRPWIRIRNNRIPDRVLVMAKRNYK
VYADLGLHTQFMVRYLTVLDTGAGPNVIVESVLPPPLRSLIRSETVPDVS
DANNNPLKTAGVIDLVVRLGRMVVKLTFIVCRSLAAPVILGCDYCDRFVD
AIRPRLKQVELEDGSTVPIVCQPLKRASRKHVPLPAAQEPTPANRNCTKL
RVASSVTIPPESQVMVSVSSRQHGLRVVQPLPSLYEKFQLTVANGIVQVT
PNSPFRVLVANLGKAPQTLAKNQVIGSVTLHPLAMLPTKVTAAEVLGITP
STEDGLPVSGAETSGEAQQLALDKTVKTDAFTTSLVPTPDTRAQPTSYDK
IDPIKALEDLDLSHVPVSHRDRLRGMLREFTTMWDGSLGEINTTEHRIDL
LPDARPVAQPPYRAGPKAREEE*

mRNA from alignment at tig00000168_pilon:421196..422464+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3360.t1 ID=Gchil3360.t1|Name=Gchil3360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000168_pilon:421196..422464+ (Gracilaria chilensis NLEC103_M9 male)
atgcctcgctccccggtgaaaatcctgacaaggaaggacaccgcagacgc
ggactctaaacacctcggtgttttgcgtcgaccgtggatacggattagaa
ataaccggatcccggatagagtcttggtaatggccaagcgtaactacaag
gtttacgctgaccttggtctgcacacgcagtttatggtgagatatctcac
ggtcctggatacaggtgctgggccgaacgttattgtggaatcggttttac
ccccgccattgcggtcactcatccgttctgaaacggtacccgacgtctca
gacgccaataacaacccgttgaaaacggctggtgtgatcgacctggtcgt
caggctagggcggatggtggttaaactaacttttattgtgtgccgctctc
tggccgcgccagttatactgggatgtgactactgcgacaggtttgtcgac
gccatccgcccacgccttaagcaggtggaacttgaggacggatcgaccgt
ccccattgtttgtcaaccgctgaagcgggcatcgaggaaacacgttcctc
tacctgctgcgcaggaacccacaccggcgaaccggaattgtacgaagcta
cgcgttgcctcgtcagtcaccatacccccggagagccaggttatggtttc
agtcagttcccgtcaacacggtcttcgggttgttcagcccttgccctcgt
tgtacgagaaatttcagttaaccgttgcgaacggaatcgtgcaagtcacg
ccaaattcccctttcagggtgttggttgccaatctgggaaaggctcccca
gacgctggcaaagaaccaagtcattgggtctgtgacgctgcacccgctcg
cgatgctccctacaaaggtgacggctgccgaagtactcggaataactccc
tctaccgaggatggtctcccggtatccggtgcagaaacctccggggaggc
acagcagttggcgctcgataaaaccgtcaagacggatgcatttacgacct
cgttggttcccacacctgacaccagggcacagcctacgagctacgataag
atagacccgatcaaggccctcgaggacctggacctgagtcatgtaccggt
ctcacatcgggaccgcttacgcggaatgctacgcgagtttaccacaatgt
gggacggctcactgggtgagatcaatacaaccgaacatcggatagacttg
ctaccggacgcacgtccggttgcacaacccccttacagggcgggaccgaa
agctcgggaggaggaataa

Coding sequence (CDS) from alignment at tig00000168_pilon:421196..422464+

>Gchil3360.t1 ID=Gchil3360.t1|Name=Gchil3360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000168_pilon:421196..422464+ (Gracilaria chilensis NLEC103_M9 male)
atgcctcgctccccggtgaaaatcctgacaaggaaggacaccgcagacgc
ggactctaaacacctcggtgttttgcgtcgaccgtggatacggattagaa
ataaccggatcccggatagagtcttggtaatggccaagcgtaactacaag
gtttacgctgaccttggtctgcacacgcagtttatggtgagatatctcac
ggtcctggatacaggtgctgggccgaacgttattgtggaatcggttttac
ccccgccattgcggtcactcatccgttctgaaacggtacccgacgtctca
gacgccaataacaacccgttgaaaacggctggtgtgatcgacctggtcgt
caggctagggcggatggtggttaaactaacttttattgtgtgccgctctc
tggccgcgccagttatactgggatgtgactactgcgacaggtttgtcgac
gccatccgcccacgccttaagcaggtggaacttgaggacggatcgaccgt
ccccattgtttgtcaaccgctgaagcgggcatcgaggaaacacgttcctc
tacctgctgcgcaggaacccacaccggcgaaccggaattgtacgaagcta
cgcgttgcctcgtcagtcaccatacccccggagagccaggttatggtttc
agtcagttcccgtcaacacggtcttcgggttgttcagcccttgccctcgt
tgtacgagaaatttcagttaaccgttgcgaacggaatcgtgcaagtcacg
ccaaattcccctttcagggtgttggttgccaatctgggaaaggctcccca
gacgctggcaaagaaccaagtcattgggtctgtgacgctgcacccgctcg
cgatgctccctacaaaggtgacggctgccgaagtactcggaataactccc
tctaccgaggatggtctcccggtatccggtgcagaaacctccggggaggc
acagcagttggcgctcgataaaaccgtcaagacggatgcatttacgacct
cgttggttcccacacctgacaccagggcacagcctacgagctacgataag
atagacccgatcaaggccctcgaggacctggacctgagtcatgtaccggt
ctcacatcgggaccgcttacgcggaatgctacgcgagtttaccacaatgt
gggacggctcactgggtgagatcaatacaaccgaacatcggatagacttg
ctaccggacgcacgtccggttgcacaacccccttacagggcgggaccgaa
agctcgggaggaggaataa