Gchil7449.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7449.t1
Unique NameGchil7449.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1274870..1275309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7449Gchil7449Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1274870..1275309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7449.t1Gchil7449.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1274870..1275309 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7449.t1.stop1Gchil7449.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1274870..1274872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7449.t1.CDS1Gchil7449.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1274870..1274919 -
Gchil7449.t1.CDS2Gchil7449.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1275030..1275150 -
Gchil7449.t1.CDS3Gchil7449.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1275259..1275309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7449.t1.exon1Gchil7449.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1274870..1274919 -
Gchil7449.t1.exon2Gchil7449.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1275030..1275150 -
Gchil7449.t1.exon3Gchil7449.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1275259..1275309 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7449.t1.intron1Gchil7449.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1274920..1275029 -
Gchil7449.t1.intron2Gchil7449.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1275151..1275258 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7449.t1.start1Gchil7449.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1275307..1275309 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7449.t1 ID=Gchil7449.t1|Name=Gchil7449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=74bp
MRRIPFHQLSTYHKAQEAPYPYQRIPYPPNTYLKMPRNPYPQAPQGAVPN
PVDIDPKDSLHLQWENTPANQQE*
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spliced messenger RNA

>Gchil7449.t1 ID=Gchil7449.t1|Name=Gchil7449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00000007_pilon:1274870..1275309- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACGCATACCGTTCCATCAACTAAGCACGTACCACAAGGCGCAAGA
GGCTCCCTACCCGTATCAACGGATCCCATATCCGCCCAACACGTATCTCA
AAATGCCCCGCAATCCTTATCCACAGGCACCACAGGGGGCAGTCCCCAAT
CCCGTCGACATCGACCCCAAAGACTCCTTGCACCTACAGTGGGAGAATAC
ACCTGCAAACCAACAGGAATAG
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protein sequence of Gchil7449.t1

>Gchil7449.t1 ID=Gchil7449.t1|Name=Gchil7449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=74bp
MRRIPFHQLSTYHKAQEAPYPYQRIPYPPNTYLKMPRNPYPQAPQGAVPN
PVDIDPKDSLHLQWENTPANQQE*
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mRNA from alignment at tig00000007_pilon:1274870..1275309-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7449.t1 ID=Gchil7449.t1|Name=Gchil7449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=440bp|location=Sequence derived from alignment at tig00000007_pilon:1274870..1275309- (Gracilaria chilensis NLEC103_M9 male)
ATGCGACGCATACCGTTCCATCAACTAAGCACGTACCACAAGGCGCAAGA
GGTACGCTGCAACCACGTCGACGCCCAGTGCCGAGACATAACACACCCGA
AATATGCCGTTATCAAAACGCAGGCAAACTACTTACAAGTCGGCGCCGCA
CCTCCACAGGCTCCCTACCCGTATCAACGGATCCCATATCCGCCCAACAC
GTATCTCAAAATGCCCCGCAATCCTTATCCACAGGCACCACAGGGGGCAG
TCCCCAATCCCGTCGACATCGACCCCAAAGGTACGTTCATCCTTGACAGC
GGATCGCATCCAACACACATCATACACCCTTACCCCACCATACAACCTCT
CCACATACATATCCTAACCCACTCCGCCACTCACCATCAGACTCCTTGCA
CCTACAGTGGGAGAATACACCTGCAAACCAACAGGAATAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:1274870..1275309-

>Gchil7449.t1 ID=Gchil7449.t1|Name=Gchil7449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00000007_pilon:1274870..1275309- (Gracilaria chilensis NLEC103_M9 male)
ATGCGACGCATACCGTTCCATCAACTAAGCACGTACCACAAGGCGCAAGA
GGCTCCCTACCCGTATCAACGGATCCCATATCCGCCCAACACGTATCTCA
AAATGCCCCGCAATCCTTATCCACAGGCACCACAGGGGGCAGTCCCCAAT
CCCGTCGACATCGACCCCAAAGACTCCTTGCACCTACAGTGGGAGAATAC
ACCTGCAAACCAACAGGAATAG
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