Gchil10466.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10466.t1
Unique NameGchil10466.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length821
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:52306..54768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10466Gchil10466Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 52306..54768 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10466.t1.stop1Gchil10466.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 52306..52308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10466.t1.CDS1Gchil10466.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 52306..54768 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10466.t1.exon1Gchil10466.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 52306..54768 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10466.t1.start1Gchil10466.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 54766..54768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10466.t1Gchil10466.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 52306..54768 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10466.t1 ID=Gchil10466.t1|Name=Gchil10466.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=821bp
MKRVGNRSAQLVRSASRRGKTSSRFQFDITVHRVDGVKPGLTYHVKWSRG
VKVATTKPVSGTKESAQSGLSFNEKLSLLVTLYKEDGNKFDPKDAKLALI
AVNQKKQIRTAAKLHFDLSQYAGVPTASVQRVLKLSDKVSIHATIESRFL
KSAGKRTGSAGASSALSGVSARSSDDFDDDFDDLAVDDVPEPEVVTASAV
RTKRTSPPLTKSVAPKLASHPSPLSSSASPANAAPRDPDATATATANSTA
PISSTTNPSTTTTAAASPPPPPLRRARPATVRKEDVKALRAAEEHTRLSE
LHAENERLLSELQRFKAKRSNSEDKHRRELDQLRAQIRNEAGKANDADVR
CSSMQTTIDELRKQNDDVSQRADALVSELSETRRSRDEFNARCKKLSAAE
EKCKQLSRDIDRLTVAMSQSGGSANDSSELEERLLSLRKEKEALEARIKG
HESHALKVKDAYQSLTGMYNKLRDENMKMTKQVERQEKELLSRSVTTAVV
PNSGAQDEVVELRAQLEEALQQVSDEKSNKESLQSDYDRLDQQVRALQDR
SAKTIQELEESREETKTLYASIEDIKSQRDAAMKRASQDGNTLSTELLKK
ELAGQTEEEKRELKERFEKEQSRLSKKTEELENEITVLREDIEYEKAEKV
KAREERDKLRDHARLLERKTSQAAKQADELHSVRRQLSTQQMRDKDQTDM
ITDLRAQVKQLQIDLGNVKVEEAEKPSSSIEDIGEVLQELVAAKLALAQA
EDDKLNLQFSMKKLRKNERMTQQRLAAHASRLEVKLGQATEELEKFHKEK
KLGKGLDSRRYNELDSDIDY*
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spliced messenger RNA

>Gchil10466.t1 ID=Gchil10466.t1|Name=Gchil10466.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00000159_pilon:52306..54768- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGCGTCGGAAACAGGTCTGCTCAGTTGGTGCGCAGCGCCTCGCG
CCGCGGAAAGACCTCGTCGCGATTCCAGTTCGACATCACCGTGCACCGCG
TGGACGGCGTGAAGCCCGGTCTCACCTACCACGTCAAATGGTCTCGCGGC
GTCAAGGTCGCCACCACAAAACCAGTTTCTGGGACAAAAGAATCTGCTCA
GTCCGGGCTCTCCTTCAACGAAAAGCTCTCCCTTCTCGTCACTCTTTATA
AAGAGGACGGCAACAAATTCGACCCCAAAGACGCAAAGCTCGCCCTCATC
GCCGTCAACCAAAAGAAGCAGATTCGCACAGCCGCAAAGCTCCACTTTGA
CCTTTCCCAATATGCGGGCGTCCCCACCGCTTCCGTGCAGCGCGTTCTCA
AGCTCTCGGATAAGGTCTCCATCCATGCTACCATTGAATCGCGTTTCCTG
AAGTCCGCCGGAAAGCGCACCGGCAGCGCGGGCGCCTCTTCTGCTCTCAG
CGGCGTATCAGCACGCTCTTCCGACGATTTTGATGATGATTTCGATGACC
TGGCCGTCGACGACGTCCCCGAGCCGGAAGTCGTCACAGCCAGTGCTGTG
CGCACCAAGAGGACTTCCCCGCCTCTGACGAAGAGCGTGGCCCCCAAACT
TGCTTCACATCCTTCACCATTATCGTCGTCGGCGTCTCCTGCCAACGCTG
CTCCACGCGACCCGGACGCCACCGCCACCGCCACCGCTAACTCCACTGCT
CCCATTTCGTCCACCACCAACCCCTCTACTACAACTACCGCCGCTGCGTC
GCCGCCGCCGCCGCCGTTGCGCCGCGCCCGGCCCGCCACTGTGCGCAAGG
AGGACGTAAAAGCCCTTCGAGCCGCGGAAGAGCACACGCGACTTTCCGAG
CTGCACGCCGAGAACGAACGATTGCTGTCAGAGTTGCAGCGATTCAAGGC
GAAGCGTAGCAATTCGGAAGACAAGCATCGTCGCGAGCTTGACCAGCTTC
GGGCGCAAATTCGCAATGAGGCGGGAAAAGCAAACGACGCGGACGTTCGC
TGCTCATCGATGCAGACTACTATCGACGAGCTGCGAAAACAGAATGACGA
CGTTTCGCAGCGCGCTGACGCTCTTGTGAGCGAGTTGAGCGAGACAAGGC
GAAGCCGCGATGAGTTTAATGCGCGATGCAAGAAGCTTAGCGCCGCAGAG
GAAAAGTGCAAGCAACTCTCGCGCGATATTGATAGATTAACTGTAGCCAT
GAGTCAGAGCGGCGGCTCGGCGAACGATTCCTCGGAGTTGGAGGAACGGC
TTCTTTCGCTGCGTAAGGAGAAGGAAGCTTTGGAAGCGCGCATCAAGGGG
CACGAATCGCATGCTTTGAAGGTGAAGGACGCGTATCAGAGTCTGACAGG
CATGTACAATAAACTTCGCGACGAGAACATGAAGATGACGAAACAGGTGG
AGAGGCAGGAGAAGGAATTGCTATCTCGATCGGTTACCACCGCAGTGGTT
CCCAATTCTGGCGCGCAAGACGAGGTGGTGGAGCTGCGTGCGCAATTGGA
AGAGGCTTTGCAACAGGTCAGTGACGAAAAATCTAACAAGGAATCACTTC
AATCAGATTATGATCGGCTTGACCAGCAGGTCCGCGCCCTCCAGGATCGC
AGCGCGAAGACGATACAGGAACTAGAGGAATCCAGAGAAGAGACTAAGAC
GCTTTACGCATCAATAGAGGACATCAAATCTCAGCGGGATGCTGCTATGA
AAAGGGCTTCCCAAGACGGCAACACTCTTTCCACCGAGCTTCTGAAGAAA
GAGCTTGCGGGGCAGACGGAGGAGGAGAAGCGGGAATTGAAGGAAAGGTT
CGAGAAAGAACAAAGTCGTTTAAGCAAAAAGACTGAAGAGCTGGAAAACG
AGATCACAGTTCTAAGGGAGGATATCGAATATGAAAAGGCTGAGAAAGTG
AAGGCGCGAGAGGAGCGAGACAAACTACGAGACCACGCTCGTCTACTGGA
AAGGAAGACATCTCAAGCCGCCAAGCAAGCTGACGAACTGCACTCCGTTC
GACGACAATTGTCTACACAGCAGATGAGGGACAAAGACCAGACCGACATG
ATCACCGACTTGCGTGCTCAAGTGAAGCAATTGCAAATTGACCTAGGTAA
TGTAAAGGTGGAGGAAGCGGAAAAGCCATCGTCGAGCATTGAGGATATTG
GGGAGGTGTTACAGGAGTTGGTGGCTGCCAAGCTTGCGCTTGCGCAAGCC
GAGGATGATAAGCTTAATTTGCAGTTTTCGATGAAAAAGCTTCGAAAGAA
TGAGAGAATGACACAACAGCGACTAGCCGCTCATGCCTCTCGGTTGGAAG
TGAAGCTAGGGCAGGCGACAGAAGAGCTAGAAAAGTTCCACAAGGAAAAG
AAACTTGGAAAAGGATTGGACTCACGGCGATACAACGAACTCGACAGCGA
CATTGACTACTAG
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protein sequence of Gchil10466.t1

>Gchil10466.t1 ID=Gchil10466.t1|Name=Gchil10466.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=821bp
MKRVGNRSAQLVRSASRRGKTSSRFQFDITVHRVDGVKPGLTYHVKWSRG
VKVATTKPVSGTKESAQSGLSFNEKLSLLVTLYKEDGNKFDPKDAKLALI
AVNQKKQIRTAAKLHFDLSQYAGVPTASVQRVLKLSDKVSIHATIESRFL
KSAGKRTGSAGASSALSGVSARSSDDFDDDFDDLAVDDVPEPEVVTASAV
RTKRTSPPLTKSVAPKLASHPSPLSSSASPANAAPRDPDATATATANSTA
PISSTTNPSTTTTAAASPPPPPLRRARPATVRKEDVKALRAAEEHTRLSE
LHAENERLLSELQRFKAKRSNSEDKHRRELDQLRAQIRNEAGKANDADVR
CSSMQTTIDELRKQNDDVSQRADALVSELSETRRSRDEFNARCKKLSAAE
EKCKQLSRDIDRLTVAMSQSGGSANDSSELEERLLSLRKEKEALEARIKG
HESHALKVKDAYQSLTGMYNKLRDENMKMTKQVERQEKELLSRSVTTAVV
PNSGAQDEVVELRAQLEEALQQVSDEKSNKESLQSDYDRLDQQVRALQDR
SAKTIQELEESREETKTLYASIEDIKSQRDAAMKRASQDGNTLSTELLKK
ELAGQTEEEKRELKERFEKEQSRLSKKTEELENEITVLREDIEYEKAEKV
KAREERDKLRDHARLLERKTSQAAKQADELHSVRRQLSTQQMRDKDQTDM
ITDLRAQVKQLQIDLGNVKVEEAEKPSSSIEDIGEVLQELVAAKLALAQA
EDDKLNLQFSMKKLRKNERMTQQRLAAHASRLEVKLGQATEELEKFHKEK
KLGKGLDSRRYNELDSDIDY*
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mRNA from alignment at tig00000159_pilon:52306..54768-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10466.t1 ID=Gchil10466.t1|Name=Gchil10466.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2463bp|location=Sequence derived from alignment at tig00000159_pilon:52306..54768- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGCGTCGGAAACAGGTCTGCTCAGTTGGTGCGCAGCGCCTCGCG
CCGCGGAAAGACCTCGTCGCGATTCCAGTTCGACATCACCGTGCACCGCG
TGGACGGCGTGAAGCCCGGTCTCACCTACCACGTCAAATGGTCTCGCGGC
GTCAAGGTCGCCACCACAAAACCAGTTTCTGGGACAAAAGAATCTGCTCA
GTCCGGGCTCTCCTTCAACGAAAAGCTCTCCCTTCTCGTCACTCTTTATA
AAGAGGACGGCAACAAATTCGACCCCAAAGACGCAAAGCTCGCCCTCATC
GCCGTCAACCAAAAGAAGCAGATTCGCACAGCCGCAAAGCTCCACTTTGA
CCTTTCCCAATATGCGGGCGTCCCCACCGCTTCCGTGCAGCGCGTTCTCA
AGCTCTCGGATAAGGTCTCCATCCATGCTACCATTGAATCGCGTTTCCTG
AAGTCCGCCGGAAAGCGCACCGGCAGCGCGGGCGCCTCTTCTGCTCTCAG
CGGCGTATCAGCACGCTCTTCCGACGATTTTGATGATGATTTCGATGACC
TGGCCGTCGACGACGTCCCCGAGCCGGAAGTCGTCACAGCCAGTGCTGTG
CGCACCAAGAGGACTTCCCCGCCTCTGACGAAGAGCGTGGCCCCCAAACT
TGCTTCACATCCTTCACCATTATCGTCGTCGGCGTCTCCTGCCAACGCTG
CTCCACGCGACCCGGACGCCACCGCCACCGCCACCGCTAACTCCACTGCT
CCCATTTCGTCCACCACCAACCCCTCTACTACAACTACCGCCGCTGCGTC
GCCGCCGCCGCCGCCGTTGCGCCGCGCCCGGCCCGCCACTGTGCGCAAGG
AGGACGTAAAAGCCCTTCGAGCCGCGGAAGAGCACACGCGACTTTCCGAG
CTGCACGCCGAGAACGAACGATTGCTGTCAGAGTTGCAGCGATTCAAGGC
GAAGCGTAGCAATTCGGAAGACAAGCATCGTCGCGAGCTTGACCAGCTTC
GGGCGCAAATTCGCAATGAGGCGGGAAAAGCAAACGACGCGGACGTTCGC
TGCTCATCGATGCAGACTACTATCGACGAGCTGCGAAAACAGAATGACGA
CGTTTCGCAGCGCGCTGACGCTCTTGTGAGCGAGTTGAGCGAGACAAGGC
GAAGCCGCGATGAGTTTAATGCGCGATGCAAGAAGCTTAGCGCCGCAGAG
GAAAAGTGCAAGCAACTCTCGCGCGATATTGATAGATTAACTGTAGCCAT
GAGTCAGAGCGGCGGCTCGGCGAACGATTCCTCGGAGTTGGAGGAACGGC
TTCTTTCGCTGCGTAAGGAGAAGGAAGCTTTGGAAGCGCGCATCAAGGGG
CACGAATCGCATGCTTTGAAGGTGAAGGACGCGTATCAGAGTCTGACAGG
CATGTACAATAAACTTCGCGACGAGAACATGAAGATGACGAAACAGGTGG
AGAGGCAGGAGAAGGAATTGCTATCTCGATCGGTTACCACCGCAGTGGTT
CCCAATTCTGGCGCGCAAGACGAGGTGGTGGAGCTGCGTGCGCAATTGGA
AGAGGCTTTGCAACAGGTCAGTGACGAAAAATCTAACAAGGAATCACTTC
AATCAGATTATGATCGGCTTGACCAGCAGGTCCGCGCCCTCCAGGATCGC
AGCGCGAAGACGATACAGGAACTAGAGGAATCCAGAGAAGAGACTAAGAC
GCTTTACGCATCAATAGAGGACATCAAATCTCAGCGGGATGCTGCTATGA
AAAGGGCTTCCCAAGACGGCAACACTCTTTCCACCGAGCTTCTGAAGAAA
GAGCTTGCGGGGCAGACGGAGGAGGAGAAGCGGGAATTGAAGGAAAGGTT
CGAGAAAGAACAAAGTCGTTTAAGCAAAAAGACTGAAGAGCTGGAAAACG
AGATCACAGTTCTAAGGGAGGATATCGAATATGAAAAGGCTGAGAAAGTG
AAGGCGCGAGAGGAGCGAGACAAACTACGAGACCACGCTCGTCTACTGGA
AAGGAAGACATCTCAAGCCGCCAAGCAAGCTGACGAACTGCACTCCGTTC
GACGACAATTGTCTACACAGCAGATGAGGGACAAAGACCAGACCGACATG
ATCACCGACTTGCGTGCTCAAGTGAAGCAATTGCAAATTGACCTAGGTAA
TGTAAAGGTGGAGGAAGCGGAAAAGCCATCGTCGAGCATTGAGGATATTG
GGGAGGTGTTACAGGAGTTGGTGGCTGCCAAGCTTGCGCTTGCGCAAGCC
GAGGATGATAAGCTTAATTTGCAGTTTTCGATGAAAAAGCTTCGAAAGAA
TGAGAGAATGACACAACAGCGACTAGCCGCTCATGCCTCTCGGTTGGAAG
TGAAGCTAGGGCAGGCGACAGAAGAGCTAGAAAAGTTCCACAAGGAAAAG
AAACTTGGAAAAGGATTGGACTCACGGCGATACAACGAACTCGACAGCGA
CATTGACTACTAG
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Coding sequence (CDS) from alignment at tig00000159_pilon:52306..54768-

>Gchil10466.t1 ID=Gchil10466.t1|Name=Gchil10466.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2463bp|location=Sequence derived from alignment at tig00000159_pilon:52306..54768- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGCGTCGGAAACAGGTCTGCTCAGTTGGTGCGCAGCGCCTCGCG
CCGCGGAAAGACCTCGTCGCGATTCCAGTTCGACATCACCGTGCACCGCG
TGGACGGCGTGAAGCCCGGTCTCACCTACCACGTCAAATGGTCTCGCGGC
GTCAAGGTCGCCACCACAAAACCAGTTTCTGGGACAAAAGAATCTGCTCA
GTCCGGGCTCTCCTTCAACGAAAAGCTCTCCCTTCTCGTCACTCTTTATA
AAGAGGACGGCAACAAATTCGACCCCAAAGACGCAAAGCTCGCCCTCATC
GCCGTCAACCAAAAGAAGCAGATTCGCACAGCCGCAAAGCTCCACTTTGA
CCTTTCCCAATATGCGGGCGTCCCCACCGCTTCCGTGCAGCGCGTTCTCA
AGCTCTCGGATAAGGTCTCCATCCATGCTACCATTGAATCGCGTTTCCTG
AAGTCCGCCGGAAAGCGCACCGGCAGCGCGGGCGCCTCTTCTGCTCTCAG
CGGCGTATCAGCACGCTCTTCCGACGATTTTGATGATGATTTCGATGACC
TGGCCGTCGACGACGTCCCCGAGCCGGAAGTCGTCACAGCCAGTGCTGTG
CGCACCAAGAGGACTTCCCCGCCTCTGACGAAGAGCGTGGCCCCCAAACT
TGCTTCACATCCTTCACCATTATCGTCGTCGGCGTCTCCTGCCAACGCTG
CTCCACGCGACCCGGACGCCACCGCCACCGCCACCGCTAACTCCACTGCT
CCCATTTCGTCCACCACCAACCCCTCTACTACAACTACCGCCGCTGCGTC
GCCGCCGCCGCCGCCGTTGCGCCGCGCCCGGCCCGCCACTGTGCGCAAGG
AGGACGTAAAAGCCCTTCGAGCCGCGGAAGAGCACACGCGACTTTCCGAG
CTGCACGCCGAGAACGAACGATTGCTGTCAGAGTTGCAGCGATTCAAGGC
GAAGCGTAGCAATTCGGAAGACAAGCATCGTCGCGAGCTTGACCAGCTTC
GGGCGCAAATTCGCAATGAGGCGGGAAAAGCAAACGACGCGGACGTTCGC
TGCTCATCGATGCAGACTACTATCGACGAGCTGCGAAAACAGAATGACGA
CGTTTCGCAGCGCGCTGACGCTCTTGTGAGCGAGTTGAGCGAGACAAGGC
GAAGCCGCGATGAGTTTAATGCGCGATGCAAGAAGCTTAGCGCCGCAGAG
GAAAAGTGCAAGCAACTCTCGCGCGATATTGATAGATTAACTGTAGCCAT
GAGTCAGAGCGGCGGCTCGGCGAACGATTCCTCGGAGTTGGAGGAACGGC
TTCTTTCGCTGCGTAAGGAGAAGGAAGCTTTGGAAGCGCGCATCAAGGGG
CACGAATCGCATGCTTTGAAGGTGAAGGACGCGTATCAGAGTCTGACAGG
CATGTACAATAAACTTCGCGACGAGAACATGAAGATGACGAAACAGGTGG
AGAGGCAGGAGAAGGAATTGCTATCTCGATCGGTTACCACCGCAGTGGTT
CCCAATTCTGGCGCGCAAGACGAGGTGGTGGAGCTGCGTGCGCAATTGGA
AGAGGCTTTGCAACAGGTCAGTGACGAAAAATCTAACAAGGAATCACTTC
AATCAGATTATGATCGGCTTGACCAGCAGGTCCGCGCCCTCCAGGATCGC
AGCGCGAAGACGATACAGGAACTAGAGGAATCCAGAGAAGAGACTAAGAC
GCTTTACGCATCAATAGAGGACATCAAATCTCAGCGGGATGCTGCTATGA
AAAGGGCTTCCCAAGACGGCAACACTCTTTCCACCGAGCTTCTGAAGAAA
GAGCTTGCGGGGCAGACGGAGGAGGAGAAGCGGGAATTGAAGGAAAGGTT
CGAGAAAGAACAAAGTCGTTTAAGCAAAAAGACTGAAGAGCTGGAAAACG
AGATCACAGTTCTAAGGGAGGATATCGAATATGAAAAGGCTGAGAAAGTG
AAGGCGCGAGAGGAGCGAGACAAACTACGAGACCACGCTCGTCTACTGGA
AAGGAAGACATCTCAAGCCGCCAAGCAAGCTGACGAACTGCACTCCGTTC
GACGACAATTGTCTACACAGCAGATGAGGGACAAAGACCAGACCGACATG
ATCACCGACTTGCGTGCTCAAGTGAAGCAATTGCAAATTGACCTAGGTAA
TGTAAAGGTGGAGGAAGCGGAAAAGCCATCGTCGAGCATTGAGGATATTG
GGGAGGTGTTACAGGAGTTGGTGGCTGCCAAGCTTGCGCTTGCGCAAGCC
GAGGATGATAAGCTTAATTTGCAGTTTTCGATGAAAAAGCTTCGAAAGAA
TGAGAGAATGACACAACAGCGACTAGCCGCTCATGCCTCTCGGTTGGAAG
TGAAGCTAGGGCAGGCGACAGAAGAGCTAGAAAAGTTCCACAAGGAAAAG
AAACTTGGAAAAGGATTGGACTCACGGCGATACAACGAACTCGACAGCGA
CATTGACTACTAG
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