Gchil10560.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10560.t1
Unique NameGchil10560.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:709457..710680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10560Gchil10560Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 709457..710680 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10560.t1.start1Gchil10560.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 709457..709459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10560.t1.CDS1Gchil10560.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 709457..710680 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10560.t1.exon1Gchil10560.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 709457..710680 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10560.t1.stop1Gchil10560.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 710678..710680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10560.t1Gchil10560.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 709457..710680 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10560.t1 ID=Gchil10560.t1|Name=Gchil10560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp
MGTVQDLVHHSNQTTFEDHQSLQEDLQLLLVYPNPTDPLLHHPHGTLSLP
SQILHVRSPYFQALLSPAWLSTCLTKQNASKQVLQDILEFLVTGVITLSS
SDNSILHNLSLASLAHEMLLDELENIVVSHIRHKSLNNSNFVAYLRPLTQ
PTVSHPTPQPPPSIEALLATHLVSNFPNLLRSFSKDECTTACIWRLLSHG
LSQSTCKDTKFAARYFTRIGIPSLISILSKEPPHNQQAMRAFLLSFPSTI
FARNFEHPKIFSPSDLLIKYRNDALKPSPKPSPPQTRFLCESPHPHPRAA
RLDATVRYIRLPQNNVYSRLTFDKRSSLGPGAKIAFYIIDPRNDNDPHVL
FAGNRLPAVLTLPSSEFWYAFSSPDYLLHAGRDGRGRSRWGWRFFAESTV
PEIEGLD*
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spliced messenger RNA

>Gchil10560.t1 ID=Gchil10560.t1|Name=Gchil10560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000159_pilon:709457..710680+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTACTGTTCAAGATCTCGTGCACCACTCGAACCAAACCACTTTCGA
AGACCATCAATCCCTCCAGGAAGACCTCCAACTCCTCTTGGTGTACCCAA
ATCCAACCGACCCGCTCTTACATCACCCGCACGGCACTCTCTCCCTCCCC
TCCCAAATCCTTCACGTTCGTTCACCTTACTTCCAAGCGCTTCTCTCACC
TGCATGGTTATCTACTTGTCTCACAAAACAAAACGCCTCGAAACAGGTCT
TGCAAGACATTCTCGAGTTCCTTGTTACTGGTGTCATCACACTATCATCC
TCTGATAATTCCATTCTTCACAACCTTTCTCTCGCATCCCTGGCGCATGA
AATGTTACTGGATGAACTGGAAAACATTGTAGTATCTCACATTCGTCACA
AATCTCTCAACAACTCTAACTTTGTCGCGTATCTTCGCCCCCTAACACAG
CCCACCGTATCTCATCCCACACCACAGCCGCCCCCCTCCATCGAAGCCCT
TTTGGCAACTCATCTTGTCTCCAATTTTCCAAATCTCTTGCGCAGCTTTT
CGAAGGACGAATGCACGACAGCCTGCATTTGGCGTCTTCTCTCGCATGGT
TTGTCACAATCCACTTGCAAAGATACCAAGTTCGCAGCCAGATATTTTAC
TCGCATCGGAATCCCATCCCTCATCTCAATTCTAAGCAAGGAACCGCCGC
ATAATCAACAGGCAATGCGCGCCTTTCTTCTCTCCTTCCCTTCAACCATC
TTTGCCAGAAATTTTGAACATCCCAAAATCTTCTCACCCTCCGACTTGCT
CATCAAATATCGTAACGACGCACTGAAACCGTCTCCGAAGCCCAGCCCAC
CACAAACGCGATTCCTGTGCGAATCACCGCATCCGCACCCAAGAGCAGCT
CGTCTAGACGCTACAGTTCGATACATCAGATTACCTCAGAACAACGTGTA
TTCAAGGCTTACATTTGATAAGCGCTCGTCTTTGGGACCGGGTGCTAAGA
TTGCGTTCTACATAATTGATCCGAGAAACGACAATGACCCGCATGTTCTT
TTCGCCGGTAACAGGTTGCCTGCTGTACTTACCTTGCCTTCTTCCGAGTT
TTGGTACGCTTTCTCCAGCCCAGATTACTTGCTGCATGCTGGGCGGGATG
GTCGTGGCCGAAGTCGATGGGGGTGGCGCTTTTTCGCTGAAAGCACCGTG
CCGGAAATTGAAGGCCTAGACTGA
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protein sequence of Gchil10560.t1

>Gchil10560.t1 ID=Gchil10560.t1|Name=Gchil10560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=408bp
MGTVQDLVHHSNQTTFEDHQSLQEDLQLLLVYPNPTDPLLHHPHGTLSLP
SQILHVRSPYFQALLSPAWLSTCLTKQNASKQVLQDILEFLVTGVITLSS
SDNSILHNLSLASLAHEMLLDELENIVVSHIRHKSLNNSNFVAYLRPLTQ
PTVSHPTPQPPPSIEALLATHLVSNFPNLLRSFSKDECTTACIWRLLSHG
LSQSTCKDTKFAARYFTRIGIPSLISILSKEPPHNQQAMRAFLLSFPSTI
FARNFEHPKIFSPSDLLIKYRNDALKPSPKPSPPQTRFLCESPHPHPRAA
RLDATVRYIRLPQNNVYSRLTFDKRSSLGPGAKIAFYIIDPRNDNDPHVL
FAGNRLPAVLTLPSSEFWYAFSSPDYLLHAGRDGRGRSRWGWRFFAESTV
PEIEGLD*
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mRNA from alignment at tig00000159_pilon:709457..710680+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10560.t1 ID=Gchil10560.t1|Name=Gchil10560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000159_pilon:709457..710680+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTACTGTTCAAGATCTCGTGCACCACTCGAACCAAACCACTTTCGA
AGACCATCAATCCCTCCAGGAAGACCTCCAACTCCTCTTGGTGTACCCAA
ATCCAACCGACCCGCTCTTACATCACCCGCACGGCACTCTCTCCCTCCCC
TCCCAAATCCTTCACGTTCGTTCACCTTACTTCCAAGCGCTTCTCTCACC
TGCATGGTTATCTACTTGTCTCACAAAACAAAACGCCTCGAAACAGGTCT
TGCAAGACATTCTCGAGTTCCTTGTTACTGGTGTCATCACACTATCATCC
TCTGATAATTCCATTCTTCACAACCTTTCTCTCGCATCCCTGGCGCATGA
AATGTTACTGGATGAACTGGAAAACATTGTAGTATCTCACATTCGTCACA
AATCTCTCAACAACTCTAACTTTGTCGCGTATCTTCGCCCCCTAACACAG
CCCACCGTATCTCATCCCACACCACAGCCGCCCCCCTCCATCGAAGCCCT
TTTGGCAACTCATCTTGTCTCCAATTTTCCAAATCTCTTGCGCAGCTTTT
CGAAGGACGAATGCACGACAGCCTGCATTTGGCGTCTTCTCTCGCATGGT
TTGTCACAATCCACTTGCAAAGATACCAAGTTCGCAGCCAGATATTTTAC
TCGCATCGGAATCCCATCCCTCATCTCAATTCTAAGCAAGGAACCGCCGC
ATAATCAACAGGCAATGCGCGCCTTTCTTCTCTCCTTCCCTTCAACCATC
TTTGCCAGAAATTTTGAACATCCCAAAATCTTCTCACCCTCCGACTTGCT
CATCAAATATCGTAACGACGCACTGAAACCGTCTCCGAAGCCCAGCCCAC
CACAAACGCGATTCCTGTGCGAATCACCGCATCCGCACCCAAGAGCAGCT
CGTCTAGACGCTACAGTTCGATACATCAGATTACCTCAGAACAACGTGTA
TTCAAGGCTTACATTTGATAAGCGCTCGTCTTTGGGACCGGGTGCTAAGA
TTGCGTTCTACATAATTGATCCGAGAAACGACAATGACCCGCATGTTCTT
TTCGCCGGTAACAGGTTGCCTGCTGTACTTACCTTGCCTTCTTCCGAGTT
TTGGTACGCTTTCTCCAGCCCAGATTACTTGCTGCATGCTGGGCGGGATG
GTCGTGGCCGAAGTCGATGGGGGTGGCGCTTTTTCGCTGAAAGCACCGTG
CCGGAAATTGAAGGCCTAGACTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:709457..710680+

>Gchil10560.t1 ID=Gchil10560.t1|Name=Gchil10560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00000159_pilon:709457..710680+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTACTGTTCAAGATCTCGTGCACCACTCGAACCAAACCACTTTCGA
AGACCATCAATCCCTCCAGGAAGACCTCCAACTCCTCTTGGTGTACCCAA
ATCCAACCGACCCGCTCTTACATCACCCGCACGGCACTCTCTCCCTCCCC
TCCCAAATCCTTCACGTTCGTTCACCTTACTTCCAAGCGCTTCTCTCACC
TGCATGGTTATCTACTTGTCTCACAAAACAAAACGCCTCGAAACAGGTCT
TGCAAGACATTCTCGAGTTCCTTGTTACTGGTGTCATCACACTATCATCC
TCTGATAATTCCATTCTTCACAACCTTTCTCTCGCATCCCTGGCGCATGA
AATGTTACTGGATGAACTGGAAAACATTGTAGTATCTCACATTCGTCACA
AATCTCTCAACAACTCTAACTTTGTCGCGTATCTTCGCCCCCTAACACAG
CCCACCGTATCTCATCCCACACCACAGCCGCCCCCCTCCATCGAAGCCCT
TTTGGCAACTCATCTTGTCTCCAATTTTCCAAATCTCTTGCGCAGCTTTT
CGAAGGACGAATGCACGACAGCCTGCATTTGGCGTCTTCTCTCGCATGGT
TTGTCACAATCCACTTGCAAAGATACCAAGTTCGCAGCCAGATATTTTAC
TCGCATCGGAATCCCATCCCTCATCTCAATTCTAAGCAAGGAACCGCCGC
ATAATCAACAGGCAATGCGCGCCTTTCTTCTCTCCTTCCCTTCAACCATC
TTTGCCAGAAATTTTGAACATCCCAAAATCTTCTCACCCTCCGACTTGCT
CATCAAATATCGTAACGACGCACTGAAACCGTCTCCGAAGCCCAGCCCAC
CACAAACGCGATTCCTGTGCGAATCACCGCATCCGCACCCAAGAGCAGCT
CGTCTAGACGCTACAGTTCGATACATCAGATTACCTCAGAACAACGTGTA
TTCAAGGCTTACATTTGATAAGCGCTCGTCTTTGGGACCGGGTGCTAAGA
TTGCGTTCTACATAATTGATCCGAGAAACGACAATGACCCGCATGTTCTT
TTCGCCGGTAACAGGTTGCCTGCTGTACTTACCTTGCCTTCTTCCGAGTT
TTGGTACGCTTTCTCCAGCCCAGATTACTTGCTGCATGCTGGGCGGGATG
GTCGTGGCCGAAGTCGATGGGGGTGGCGCTTTTTCGCTGAAAGCACCGTG
CCGGAAATTGAAGGCCTAGACTGA
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