Gchil1028.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1028.t1
Unique NameGchil1028.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length583
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000144_piloncontigtig00000144_pilon:25768..27516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1028Gchil1028Gracilaria chilensis NLEC103_M9 malegenetig00000144_pilon 25768..27516 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1028.t1.start1Gchil1028.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000144_pilon 25768..25770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1028.t1.CDS1Gchil1028.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000144_pilon 25768..27516 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1028.t1.exon1Gchil1028.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000144_pilon 25768..27516 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1028.t1.stop1Gchil1028.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000144_pilon 27514..27516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1028.t1Gchil1028.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000144_pilon 25768..27516 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1028.t1 ID=Gchil1028.t1|Name=Gchil1028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=583bp
MVDPSTSNSTTVRQTIISNLEAPRLQGVATKHFTYFLKLRELYEKQISEK
NRELGLTITPTSFKASIDDSLLKIFITAEWISATAVSEITEDELTKCIKE
RASFKPEGNDLFRIENIIRNVKMDMSLKEAEGRVWTLQYPYVTVLEAAGM
QDLPEQKPHIAIKHILKRVKPPRLRTRMKNIVEWRKDEGFEKKDFGAFMR
ELAKQAKKLEEELETEPSQVSDTDNSETDSGATKRHGGKSGQKNKQLVGK
KRSRQEEEKTASSKDSPASKKAKADLPPCLNPKCDGHHFISKCPNSSEDV
KDTLRKEYRERKKAGRRNRADIPASKPTNGGVRKGSLHRFGAEIIDSHSS
LFSAYFCQGAVETVVLCDQGADTNIIPMAVFQKIRKADPNCPIQALNPPH
IYTGIAALASLKAAPQPKPNILLCKKQVELDVHLRIRHGTPLVLRSVTWK
IADADLDCVIIGRKVLQALGCDNKAILAAACDQHNGIINIPEALDRDSNM
RHAQGSNTIASLLQSGTFHSSATEGDDGLEDTNVYIDLGDDDQSVIDEGV
SNLVANAKDNGMSEKGIVKLANLVEKYKQVFD*
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spliced messenger RNA

>Gchil1028.t1 ID=Gchil1028.t1|Name=Gchil1028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000144_pilon:25768..27516+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGATCCTTCTACGAGCAACAGCACGACTGTTCGTCAGACTATCAT
ATCAAACCTTGAAGCGCCTAGGTTACAAGGTGTTGCAACCAAACACTTTA
CGTACTTCCTCAAGCTCCGAGAGCTTTATGAAAAGCAAATCTCCGAAAAG
AATCGCGAGCTAGGACTCACTATCACCCCTACCTCATTCAAGGCATCAAT
TGACGATTCGCTTTTGAAGATATTCATCACCGCAGAATGGATTTCTGCTA
CGGCGGTTAGCGAGATCACAGAAGACGAACTGACAAAGTGCATCAAGGAG
CGGGCAAGCTTCAAACCCGAGGGCAATGACCTATTTCGAATTGAAAACAT
CATTCGTAATGTCAAGATGGATATGTCTCTGAAAGAAGCCGAAGGACGTG
TCTGGACGCTCCAGTATCCCTACGTCACAGTCCTCGAAGCTGCTGGAATG
CAGGACCTTCCCGAGCAGAAGCCACATATCGCCATCAAGCACATCCTGAA
ACGTGTAAAGCCACCTCGTCTTCGCACACGCATGAAGAACATTGTCGAAT
GGCGCAAAGACGAAGGCTTTGAGAAGAAGGATTTTGGTGCTTTCATGCGA
GAGTTAGCCAAACAGGCTAAGAAGCTGGAGGAGGAACTGGAGACAGAACC
ATCACAAGTAAGTGATACTGACAACTCTGAAACGGACTCCGGTGCTACCA
AACGTCATGGCGGAAAGTCGGGTCAGAAGAACAAGCAGCTTGTTGGGAAG
AAGCGAAGTCGGCAGGAGGAGGAGAAAACAGCCAGCTCCAAAGACAGTCC
GGCGTCGAAAAAGGCCAAAGCAGATCTTCCCCCTTGTCTCAACCCGAAGT
GTGACGGCCACCATTTCATCTCGAAGTGCCCTAATTCATCCGAAGACGTA
AAGGACACACTTCGAAAGGAATACCGAGAGCGAAAGAAGGCTGGACGCCG
GAATCGCGCGGATATTCCAGCATCGAAGCCGACAAACGGTGGGGTGAGGA
AAGGTTCACTGCACCGCTTTGGAGCGGAAATAATCGACTCACACTCCTCA
CTTTTCAGTGCCTATTTTTGCCAGGGCGCTGTCGAGACAGTAGTGCTGTG
CGATCAAGGTGCTGACACAAATATCATCCCTATGGCGGTATTTCAGAAGA
TCAGGAAGGCTGACCCGAATTGCCCCATACAAGCACTCAACCCGCCGCAT
ATTTACACTGGAATTGCAGCGTTAGCCTCACTGAAAGCAGCGCCGCAGCC
CAAACCCAATATCCTTCTTTGTAAGAAGCAGGTTGAGCTGGACGTGCACC
TGCGCATCAGACACGGTACCCCACTGGTATTGCGCTCCGTCACGTGGAAG
ATCGCTGACGCAGATCTGGATTGCGTAATCATCGGACGCAAGGTTTTACA
AGCTCTAGGCTGCGACAACAAGGCAATCCTGGCTGCAGCGTGTGATCAAC
ACAATGGAATCATAAACATTCCGGAGGCTCTCGATAGAGATTCCAATATG
CGCCACGCTCAAGGGAGTAACACGATCGCGTCTTTGTTGCAGTCGGGAAC
TTTCCATAGCAGCGCGACGGAAGGAGATGACGGActggaggacactaacg
tgtacatcgatctgggtgacgacgatcagtcggtgattgatgaaggagtt
tcaaacctggtagctaacgcaaaggacaacggcatgtccgagaagggaat
tgtcaagttagcgaacctagtagaaaaatacaaacaggttttcgactaa
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protein sequence of Gchil1028.t1

>Gchil1028.t1 ID=Gchil1028.t1|Name=Gchil1028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=583bp
MVDPSTSNSTTVRQTIISNLEAPRLQGVATKHFTYFLKLRELYEKQISEK
NRELGLTITPTSFKASIDDSLLKIFITAEWISATAVSEITEDELTKCIKE
RASFKPEGNDLFRIENIIRNVKMDMSLKEAEGRVWTLQYPYVTVLEAAGM
QDLPEQKPHIAIKHILKRVKPPRLRTRMKNIVEWRKDEGFEKKDFGAFMR
ELAKQAKKLEEELETEPSQVSDTDNSETDSGATKRHGGKSGQKNKQLVGK
KRSRQEEEKTASSKDSPASKKAKADLPPCLNPKCDGHHFISKCPNSSEDV
KDTLRKEYRERKKAGRRNRADIPASKPTNGGVRKGSLHRFGAEIIDSHSS
LFSAYFCQGAVETVVLCDQGADTNIIPMAVFQKIRKADPNCPIQALNPPH
IYTGIAALASLKAAPQPKPNILLCKKQVELDVHLRIRHGTPLVLRSVTWK
IADADLDCVIIGRKVLQALGCDNKAILAAACDQHNGIINIPEALDRDSNM
RHAQGSNTIASLLQSGTFHSSATEGDDGLEDTNVYIDLGDDDQSVIDEGV
SNLVANAKDNGMSEKGIVKLANLVEKYKQVFD*
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mRNA from alignment at tig00000144_pilon:25768..27516+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1028.t1 ID=Gchil1028.t1|Name=Gchil1028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000144_pilon:25768..27516+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGATCCTTCTACGAGCAACAGCACGACTGTTCGTCAGACTATCAT
ATCAAACCTTGAAGCGCCTAGGTTACAAGGTGTTGCAACCAAACACTTTA
CGTACTTCCTCAAGCTCCGAGAGCTTTATGAAAAGCAAATCTCCGAAAAG
AATCGCGAGCTAGGACTCACTATCACCCCTACCTCATTCAAGGCATCAAT
TGACGATTCGCTTTTGAAGATATTCATCACCGCAGAATGGATTTCTGCTA
CGGCGGTTAGCGAGATCACAGAAGACGAACTGACAAAGTGCATCAAGGAG
CGGGCAAGCTTCAAACCCGAGGGCAATGACCTATTTCGAATTGAAAACAT
CATTCGTAATGTCAAGATGGATATGTCTCTGAAAGAAGCCGAAGGACGTG
TCTGGACGCTCCAGTATCCCTACGTCACAGTCCTCGAAGCTGCTGGAATG
CAGGACCTTCCCGAGCAGAAGCCACATATCGCCATCAAGCACATCCTGAA
ACGTGTAAAGCCACCTCGTCTTCGCACACGCATGAAGAACATTGTCGAAT
GGCGCAAAGACGAAGGCTTTGAGAAGAAGGATTTTGGTGCTTTCATGCGA
GAGTTAGCCAAACAGGCTAAGAAGCTGGAGGAGGAACTGGAGACAGAACC
ATCACAAGTAAGTGATACTGACAACTCTGAAACGGACTCCGGTGCTACCA
AACGTCATGGCGGAAAGTCGGGTCAGAAGAACAAGCAGCTTGTTGGGAAG
AAGCGAAGTCGGCAGGAGGAGGAGAAAACAGCCAGCTCCAAAGACAGTCC
GGCGTCGAAAAAGGCCAAAGCAGATCTTCCCCCTTGTCTCAACCCGAAGT
GTGACGGCCACCATTTCATCTCGAAGTGCCCTAATTCATCCGAAGACGTA
AAGGACACACTTCGAAAGGAATACCGAGAGCGAAAGAAGGCTGGACGCCG
GAATCGCGCGGATATTCCAGCATCGAAGCCGACAAACGGTGGGGTGAGGA
AAGGTTCACTGCACCGCTTTGGAGCGGAAATAATCGACTCACACTCCTCA
CTTTTCAGTGCCTATTTTTGCCAGGGCGCTGTCGAGACAGTAGTGCTGTG
CGATCAAGGTGCTGACACAAATATCATCCCTATGGCGGTATTTCAGAAGA
TCAGGAAGGCTGACCCGAATTGCCCCATACAAGCACTCAACCCGCCGCAT
ATTTACACTGGAATTGCAGCGTTAGCCTCACTGAAAGCAGCGCCGCAGCC
CAAACCCAATATCCTTCTTTGTAAGAAGCAGGTTGAGCTGGACGTGCACC
TGCGCATCAGACACGGTACCCCACTGGTATTGCGCTCCGTCACGTGGAAG
ATCGCTGACGCAGATCTGGATTGCGTAATCATCGGACGCAAGGTTTTACA
AGCTCTAGGCTGCGACAACAAGGCAATCCTGGCTGCAGCGTGTGATCAAC
ACAATGGAATCATAAACATTCCGGAGGCTCTCGATAGAGATTCCAATATG
CGCCACGCTCAAGGGAGTAACACGATCGCGTCTTTGTTGCAGTCGGGAAC
TTTCCATAGCAGCGCGACGGAAGGAGATGACGGActggaggacactaacg
tgtacatcgatctgggtgacgacgatcagtcggtgattgatgaaggagtt
tcaaacctggtagctaacgcaaaggacaacggcatgtccgagaagggaat
tgtcaagttagcgaacctagtagaaaaatacaaacaggttttcgactaa
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Coding sequence (CDS) from alignment at tig00000144_pilon:25768..27516+

>Gchil1028.t1 ID=Gchil1028.t1|Name=Gchil1028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00000144_pilon:25768..27516+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGATCCTTCTACGAGCAACAGCACGACTGTTCGTCAGACTATCAT
ATCAAACCTTGAAGCGCCTAGGTTACAAGGTGTTGCAACCAAACACTTTA
CGTACTTCCTCAAGCTCCGAGAGCTTTATGAAAAGCAAATCTCCGAAAAG
AATCGCGAGCTAGGACTCACTATCACCCCTACCTCATTCAAGGCATCAAT
TGACGATTCGCTTTTGAAGATATTCATCACCGCAGAATGGATTTCTGCTA
CGGCGGTTAGCGAGATCACAGAAGACGAACTGACAAAGTGCATCAAGGAG
CGGGCAAGCTTCAAACCCGAGGGCAATGACCTATTTCGAATTGAAAACAT
CATTCGTAATGTCAAGATGGATATGTCTCTGAAAGAAGCCGAAGGACGTG
TCTGGACGCTCCAGTATCCCTACGTCACAGTCCTCGAAGCTGCTGGAATG
CAGGACCTTCCCGAGCAGAAGCCACATATCGCCATCAAGCACATCCTGAA
ACGTGTAAAGCCACCTCGTCTTCGCACACGCATGAAGAACATTGTCGAAT
GGCGCAAAGACGAAGGCTTTGAGAAGAAGGATTTTGGTGCTTTCATGCGA
GAGTTAGCCAAACAGGCTAAGAAGCTGGAGGAGGAACTGGAGACAGAACC
ATCACAAGTAAGTGATACTGACAACTCTGAAACGGACTCCGGTGCTACCA
AACGTCATGGCGGAAAGTCGGGTCAGAAGAACAAGCAGCTTGTTGGGAAG
AAGCGAAGTCGGCAGGAGGAGGAGAAAACAGCCAGCTCCAAAGACAGTCC
GGCGTCGAAAAAGGCCAAAGCAGATCTTCCCCCTTGTCTCAACCCGAAGT
GTGACGGCCACCATTTCATCTCGAAGTGCCCTAATTCATCCGAAGACGTA
AAGGACACACTTCGAAAGGAATACCGAGAGCGAAAGAAGGCTGGACGCCG
GAATCGCGCGGATATTCCAGCATCGAAGCCGACAAACGGTGGGGTGAGGA
AAGGTTCACTGCACCGCTTTGGAGCGGAAATAATCGACTCACACTCCTCA
CTTTTCAGTGCCTATTTTTGCCAGGGCGCTGTCGAGACAGTAGTGCTGTG
CGATCAAGGTGCTGACACAAATATCATCCCTATGGCGGTATTTCAGAAGA
TCAGGAAGGCTGACCCGAATTGCCCCATACAAGCACTCAACCCGCCGCAT
ATTTACACTGGAATTGCAGCGTTAGCCTCACTGAAAGCAGCGCCGCAGCC
CAAACCCAATATCCTTCTTTGTAAGAAGCAGGTTGAGCTGGACGTGCACC
TGCGCATCAGACACGGTACCCCACTGGTATTGCGCTCCGTCACGTGGAAG
ATCGCTGACGCAGATCTGGATTGCGTAATCATCGGACGCAAGGTTTTACA
AGCTCTAGGCTGCGACAACAAGGCAATCCTGGCTGCAGCGTGTGATCAAC
ACAATGGAATCATAAACATTCCGGAGGCTCTCGATAGAGATTCCAATATG
CGCCACGCTCAAGGGAGTAACACGATCGCGTCTTTGTTGCAGTCGGGAAC
TTTCCATAGCAGCGCGACGGAAGGAGATGACGGActggaggacactaacg
tgtacatcgatctgggtgacgacgatcagtcggtgattgatgaaggagtt
tcaaacctggtagctaacgcaaaggacaacggcatgtccgagaagggaat
tgtcaagttagcgaacctagtagaaaaatacaaacaggttttcgactaa
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