Gchil10813.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10813.t1
Unique Name	Gchil10813.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	607

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000138_pilon	contig	tig00000138_pilon:1503922..1505742 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	43151.ADAC004906-PA
Preferred name	NELFCD
PFAMs	TH1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15181
GOs	GO:0000122,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0017053,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032021,GO:0032774,GO:0032784,GO:0032785,GO:0032991,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098687,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue	1.06e-05
EggNOG OGs	28HGD@1\|root,2QPUE@2759\|Eukaryota,38BBU@33154\|Opisthokonta,3BCYY@33208\|Metazoa,3CS4Q@33213\|Bilateria,41YCG@6656\|Arthropoda,3SGPQ@50557\|Insecta,45175@7147\|Diptera,45G7K@7148\|Nematocera
Description	TH1 protein
COG category	J
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10813	Gchil10813	Gracilaria chilensis NLEC103_M9 male	gene	tig00000138_pilon 1503922..1505742 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10813.t1.stop1	Gchil10813.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000138_pilon 1503922..1503924 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10813.t1.CDS1	Gchil10813.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000138_pilon 1503922..1505742 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10813.t1.exon1	Gchil10813.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000138_pilon 1503922..1505742 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10813.t1.start1	Gchil10813.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000138_pilon 1505740..1505742 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10813.t1	Gchil10813.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000138_pilon 1503922..1505742 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000138_pilon:1503922..1505742-
coding sequence from alignment at tig00000138_pilon:1503922..1505742-

mRNA sequence

>Gchil10813.t1 ID=Gchil10813.t1|Name=Gchil10813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=607bp
MSTALNVFKQVDAILDENIEEKLRSFASAGGDLTEACEALSQSYEGLPDM
LRLLLDWINSYGNGAQVLEKAFNTVITTNEANIIPKLDDALTESDAKEFL
TMVISSDKWSSVISDMASRHKKSLLYEMLMREKRLKDADLSLNTVKSSGE
FVKALQEHFSIFFGSAAGQTCASVEALFTKVIALCSYDEHTLIVGTRFLC
YMSRNAQKPLTRGVYKRVGEEVRKAVVGRAKKSTSISEQQKKYEVFRIFA
MIDSAVAGAAINRSVVDALVMILEKGDTEQNFEKEIGTLGGVYGFLFGDV
GVTDMETDGQSIIDTTLDFSINSKAFCIELLCHTEIVEGLMNAIFSHHHR
SYITDKIPNIRKRECLVLLLMYIEMFRTMPEQDIRALLCNSSLRESFRNS
LKLGMERINTVVAACEACPPGTPWFKMKRGIASTLADAVSNSSMAYGVFI
WACEGLKGSSDARALIKTAPKHLAFLQAVAENHIQLRPKILDAVHEAFVR
NYEGLDITQIEDMRDMYVNYIISLARVQMAPEVVDAFFEKWAGDERVDKA
HLRRFVAGLLDTISLPFSKDLEQKFARMVEHKRVNSALDDETKKRVDRLL
RALRES*

spliced messenger RNA

>Gchil10813.t1 ID=Gchil10813.t1|Name=Gchil10813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000138_pilon:1503922..1505742- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCGCGCTCAATGTCTTCAAACAGGTCGATGCGATTTTGGATGA
AAATATTGAGGAGAAACTCAGGTCGTTCGCCAGTGCAGGCGGGGACCTAA
CGGAAGCATGTGAGGCTCTATCTCAAAGTTACGAAGGCCTTCCAGACATG
CTTCGATTACTTTTGGACTGGATTAACTCGTATGGAAATGGAGCCCAAGT
TCTCGAAAAAGCATTCAATACAGTCATTACGACGAACGAGGCAAATATAA
TTCCGAAGTTGGATGATGCGCTGACTGAGTCCGATGCGAAAGAATTTCTT
ACTATGGTGATATCCTCTGATAAATGGAGCTCTGTCATCAGCGATATGGC
GTCACGCCACAAGAAAAGCCTTCTATATGAAATGCTCATGCGTGAAAAGC
GTTTAAAGGACGCTGATCTGAGTCTCAACACAGTCAAATCTTCAGGAGAA
TTTGTCAAAGCTTTGCAAGAACATTTTTCTATTTTTTTTGGCTCCGCCGC
TGGTCAAACCTGTGCGTCCGTAGAAGCTCTGTTTACAAAAGTTATCGCGC
TATGTTCTTACGATGAACATACACTCATTGTCGGTACTCGTTTTCTGTGC
TACATGTCAAGGAATGCGCAGAAACCACTGACAAGAGGGGTTTATAAGAG
AGTTGGAGAAGAAGTGAGAAAAGCTGTTGTCGGAAGGGCCAAGAAAAGCA
CATCAATATCAGAGCAACAGAAGAAGTATGAAGTATTTCGTATATTTGCC
ATGATTGATTCTGCCGTGGCGGGAGCTGCCATAAATCGCAGTGTAGTTGA
TGCCCTTGTAATGATTTTAGAAAAGGGCGACACGGAACAGAATTTTGAAA
AGGAAATCGGAACTCTTGGTGGCGTTTATGGCTTCCTTTTCGGGGATGTC
GGCGTAACAGATATGGAAACGGATGGCCAGTCGATAATAGATACAACACT
CGACTTTTCAATCAATAGCAAAGCATTTTGCATTGAGCTTCTATGCCACA
CAGAGATTGTTGAAGGCCTAATGAACGCCATCTTTAGCCATCACCATCGT
TCATATATTACAGACAAAATTCCGAATATTAGAAAGCGAGAATGCCTTGT
TTTGCTCCTAATGTACATCGAGATGTTCAGGACTATGCCCGAGCAGGACA
TTCGCGCATTACTATGTAACTCATCGCTACGAGAAAGCTTCAGAAACAGT
CTCAAGTTAGGAATGGAAAGGATCAACACCGTGGTGGCTGCTTGTGAAGC
TTGTCCTCCGGGGACGCCGTGGTTCAAGATGAAGCGAGGCATTGCAAGCA
CTCTAGCTGACGCTGTTAGTAACTCTTCAATGGCATATGGCGTGTTTATT
TGGGCATGTGAAGGTCTAAAAGGAAGTTCAGATGCGAGAGCTTTGATTAA
AACGGCACCAAAACACTTGGCATTCCTTCAAGCCGTAGCAGAAAATCACA
TTCAACTCCGACCGAAGATTTTAGATGCCGTTCACGAAGCCTTCGTCCGG
AATTACGAAGGGCTGGATATCACTCAAATTGAAGACATGCGTGATATGTA
CGTGAACTATATCATTTCTTTGGCGCGCGTACAAATGGCTCCTGAAGTTG
TGGATGCATTCTTCGAGAAATGGGCTGGTGATGAAAGGGTGGACAAGGCA
CATCTAAGACGATTTGTTGCGGGACTGTTGGACACAATTTCGTTGCCGTT
CTCCAAGGATTTAGAACAAAAGTTTGCTCGCATGGTTGAACACAAGCGAG
TGAATTCGGCTCTTGATGACGAGACCAAGAAAAGAGTGGATCGGCTTCTA
CGTGCACTTCGTGAGAGTTGA

protein sequence of Gchil10813.t1

>Gchil10813.t1 ID=Gchil10813.t1|Name=Gchil10813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=607bp
MSTALNVFKQVDAILDENIEEKLRSFASAGGDLTEACEALSQSYEGLPDM
LRLLLDWINSYGNGAQVLEKAFNTVITTNEANIIPKLDDALTESDAKEFL
TMVISSDKWSSVISDMASRHKKSLLYEMLMREKRLKDADLSLNTVKSSGE
FVKALQEHFSIFFGSAAGQTCASVEALFTKVIALCSYDEHTLIVGTRFLC
YMSRNAQKPLTRGVYKRVGEEVRKAVVGRAKKSTSISEQQKKYEVFRIFA
MIDSAVAGAAINRSVVDALVMILEKGDTEQNFEKEIGTLGGVYGFLFGDV
GVTDMETDGQSIIDTTLDFSINSKAFCIELLCHTEIVEGLMNAIFSHHHR
SYITDKIPNIRKRECLVLLLMYIEMFRTMPEQDIRALLCNSSLRESFRNS
LKLGMERINTVVAACEACPPGTPWFKMKRGIASTLADAVSNSSMAYGVFI
WACEGLKGSSDARALIKTAPKHLAFLQAVAENHIQLRPKILDAVHEAFVR
NYEGLDITQIEDMRDMYVNYIISLARVQMAPEVVDAFFEKWAGDERVDKA
HLRRFVAGLLDTISLPFSKDLEQKFARMVEHKRVNSALDDETKKRVDRLL
RALRES*

mRNA from alignment at tig00000138_pilon:1503922..1505742-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10813.t1 ID=Gchil10813.t1|Name=Gchil10813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00000138_pilon:1503922..1505742- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACCGCGCTCAATGTCTTCAAACAGGTCGATGCGATTTTGGATGA
AAATATTGAGGAGAAACTCAGGTCGTTCGCCAGTGCAGGCGGGGACCTAA
CGGAAGCATGTGAGGCTCTATCTCAAAGTTACGAAGGCCTTCCAGACATG
CTTCGATTACTTTTGGACTGGATTAACTCGTATGGAAATGGAGCCCAAGT
TCTCGAAAAAGCATTCAATACAGTCATTACGACGAACGAGGCAAATATAA
TTCCGAAGTTGGATGATGCGCTGACTGAGTCCGATGCGAAAGAATTTCTT
ACTATGGTGATATCCTCTGATAAATGGAGCTCTGTCATCAGCGATATGGC
GTCACGCCACAAGAAAAGCCTTCTATATGAAATGCTCATGCGTGAAAAGC
GTTTAAAGGACGCTGATCTGAGTCTCAACACAGTCAAATCTTCAGGAGAA
TTTGTCAAAGCTTTGCAAGAACATTTTTCTATTTTTTTTGGCTCCGCCGC
TGGTCAAACCTGTGCGTCCGTAGAAGCTCTGTTTACAAAAGTTATCGCGC
TATGTTCTTACGATGAACATACACTCATTGTCGGTACTCGTTTTCTGTGC
TACATGTCAAGGAATGCGCAGAAACCACTGACAAGAGGGGTTTATAAGAG
AGTTGGAGAAGAAGTGAGAAAAGCTGTTGTCGGAAGGGCCAAGAAAAGCA
CATCAATATCAGAGCAACAGAAGAAGTATGAAGTATTTCGTATATTTGCC
ATGATTGATTCTGCCGTGGCGGGAGCTGCCATAAATCGCAGTGTAGTTGA
TGCCCTTGTAATGATTTTAGAAAAGGGCGACACGGAACAGAATTTTGAAA
AGGAAATCGGAACTCTTGGTGGCGTTTATGGCTTCCTTTTCGGGGATGTC
GGCGTAACAGATATGGAAACGGATGGCCAGTCGATAATAGATACAACACT
CGACTTTTCAATCAATAGCAAAGCATTTTGCATTGAGCTTCTATGCCACA
CAGAGATTGTTGAAGGCCTAATGAACGCCATCTTTAGCCATCACCATCGT
TCATATATTACAGACAAAATTCCGAATATTAGAAAGCGAGAATGCCTTGT
TTTGCTCCTAATGTACATCGAGATGTTCAGGACTATGCCCGAGCAGGACA
TTCGCGCATTACTATGTAACTCATCGCTACGAGAAAGCTTCAGAAACAGT
CTCAAGTTAGGAATGGAAAGGATCAACACCGTGGTGGCTGCTTGTGAAGC
TTGTCCTCCGGGGACGCCGTGGTTCAAGATGAAGCGAGGCATTGCAAGCA
CTCTAGCTGACGCTGTTAGTAACTCTTCAATGGCATATGGCGTGTTTATT
TGGGCATGTGAAGGTCTAAAAGGAAGTTCAGATGCGAGAGCTTTGATTAA
AACGGCACCAAAACACTTGGCATTCCTTCAAGCCGTAGCAGAAAATCACA
TTCAACTCCGACCGAAGATTTTAGATGCCGTTCACGAAGCCTTCGTCCGG
AATTACGAAGGGCTGGATATCACTCAAATTGAAGACATGCGTGATATGTA
CGTGAACTATATCATTTCTTTGGCGCGCGTACAAATGGCTCCTGAAGTTG
TGGATGCATTCTTCGAGAAATGGGCTGGTGATGAAAGGGTGGACAAGGCA
CATCTAAGACGATTTGTTGCGGGACTGTTGGACACAATTTCGTTGCCGTT
CTCCAAGGATTTAGAACAAAAGTTTGCTCGCATGGTTGAACACAAGCGAG
TGAATTCGGCTCTTGATGACGAGACCAAGAAAAGAGTGGATCGGCTTCTA
CGTGCACTTCGTGAGAGTTGA

Coding sequence (CDS) from alignment at tig00000138_pilon:1503922..1505742-

>Gchil10813.t1 ID=Gchil10813.t1|Name=Gchil10813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1821bp|location=Sequence derived from alignment at tig00000138_pilon:1503922..1505742- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACCGCGCTCAATGTCTTCAAACAGGTCGATGCGATTTTGGATGA
AAATATTGAGGAGAAACTCAGGTCGTTCGCCAGTGCAGGCGGGGACCTAA
CGGAAGCATGTGAGGCTCTATCTCAAAGTTACGAAGGCCTTCCAGACATG
CTTCGATTACTTTTGGACTGGATTAACTCGTATGGAAATGGAGCCCAAGT
TCTCGAAAAAGCATTCAATACAGTCATTACGACGAACGAGGCAAATATAA
TTCCGAAGTTGGATGATGCGCTGACTGAGTCCGATGCGAAAGAATTTCTT
ACTATGGTGATATCCTCTGATAAATGGAGCTCTGTCATCAGCGATATGGC
GTCACGCCACAAGAAAAGCCTTCTATATGAAATGCTCATGCGTGAAAAGC
GTTTAAAGGACGCTGATCTGAGTCTCAACACAGTCAAATCTTCAGGAGAA
TTTGTCAAAGCTTTGCAAGAACATTTTTCTATTTTTTTTGGCTCCGCCGC
TGGTCAAACCTGTGCGTCCGTAGAAGCTCTGTTTACAAAAGTTATCGCGC
TATGTTCTTACGATGAACATACACTCATTGTCGGTACTCGTTTTCTGTGC
TACATGTCAAGGAATGCGCAGAAACCACTGACAAGAGGGGTTTATAAGAG
AGTTGGAGAAGAAGTGAGAAAAGCTGTTGTCGGAAGGGCCAAGAAAAGCA
CATCAATATCAGAGCAACAGAAGAAGTATGAAGTATTTCGTATATTTGCC
ATGATTGATTCTGCCGTGGCGGGAGCTGCCATAAATCGCAGTGTAGTTGA
TGCCCTTGTAATGATTTTAGAAAAGGGCGACACGGAACAGAATTTTGAAA
AGGAAATCGGAACTCTTGGTGGCGTTTATGGCTTCCTTTTCGGGGATGTC
GGCGTAACAGATATGGAAACGGATGGCCAGTCGATAATAGATACAACACT
CGACTTTTCAATCAATAGCAAAGCATTTTGCATTGAGCTTCTATGCCACA
CAGAGATTGTTGAAGGCCTAATGAACGCCATCTTTAGCCATCACCATCGT
TCATATATTACAGACAAAATTCCGAATATTAGAAAGCGAGAATGCCTTGT
TTTGCTCCTAATGTACATCGAGATGTTCAGGACTATGCCCGAGCAGGACA
TTCGCGCATTACTATGTAACTCATCGCTACGAGAAAGCTTCAGAAACAGT
CTCAAGTTAGGAATGGAAAGGATCAACACCGTGGTGGCTGCTTGTGAAGC
TTGTCCTCCGGGGACGCCGTGGTTCAAGATGAAGCGAGGCATTGCAAGCA
CTCTAGCTGACGCTGTTAGTAACTCTTCAATGGCATATGGCGTGTTTATT
TGGGCATGTGAAGGTCTAAAAGGAAGTTCAGATGCGAGAGCTTTGATTAA
AACGGCACCAAAACACTTGGCATTCCTTCAAGCCGTAGCAGAAAATCACA
TTCAACTCCGACCGAAGATTTTAGATGCCGTTCACGAAGCCTTCGTCCGG
AATTACGAAGGGCTGGATATCACTCAAATTGAAGACATGCGTGATATGTA
CGTGAACTATATCATTTCTTTGGCGCGCGTACAAATGGCTCCTGAAGTTG
TGGATGCATTCTTCGAGAAATGGGCTGGTGATGAAAGGGTGGACAAGGCA
CATCTAAGACGATTTGTTGCGGGACTGTTGGACACAATTTCGTTGCCGTT
CTCCAAGGATTTAGAACAAAAGTTTGCTCGCATGGTTGAACACAAGCGAG
TGAATTCGGCTCTTGATGACGAGACCAAGAAAAGAGTGGATCGGCTTCTA
CGTGCACTTCGTGAGAGTTGA