Gchil7603.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7603.t1
Unique NameGchil7603.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2184826..2186115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.001G079100.1
PFAMsLON_substr_bdg,zf-C3HC4_2
Max annot lvl35493|Streptophyta
Evalue1.64e-42
EggNOG OGsCOG0457@1|root,COG2802@1|root,KOG0548@2759|Eukaryota,KOG4159@2759|Eukaryota,37IPU@33090|Viridiplantae,3GAXK@35493|Streptophyta
DescriptionLON peptidase N-terminal domain and RING finger protein
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7603Gchil7603Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2184826..2186115 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7603.t1.stop1Gchil7603.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2184826..2184828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7603.t1.CDS1Gchil7603.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2184826..2186115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7603.t1.exon1Gchil7603.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2184826..2186115 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7603.t1.start1Gchil7603.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2186113..2186115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7603.t1Gchil7603.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2184826..2186115 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7603.t1 ID=Gchil7603.t1|Name=Gchil7603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=430bp
MPPKAKSKGSTTECVCIGVCVGFECVKQRSNALLTLGRSAEALALVEKAI
DESGDDEQLADDFRTIISIIKSSERRNRPHENNSSILVDSKAPGGSPKES
DEGSSSRASKRFRIDRDDFLINLAEHLDCIICSKLLFEPVTTACGHTFCR
SCLSRAVDVSDSCPMCRTILHLEDPSVMPITNVLRTAIIHCFPEDYEIRR
KESEADIRSENTLNRFPLFPLNAVVFPMQRFPMHIFEARYQLMLRRIMQG
SRKFGLVALKRGSEGSSELCDVGCVLEVTKVERFPDGRSLIQTVARERFK
LKGRIEVDGYFVGRTEVYEDTEDTDNDDVRKVESRVREILGGLLERGGRL
PPIRHALQRAGQVPTEVQGAGALGMWLAGMLVSDLSERQHFLELNNSKTR
LLEMEKIVLRFRESLLGPSGLESRECSIQ*
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spliced messenger RNA

>Gchil7603.t1 ID=Gchil7603.t1|Name=Gchil7603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000007_pilon:2184826..2186115- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCTAAAGCAAAGTCGAAAGGAAGTACAACCGAATGCGTTTGTAT
TGGAGTGTGTGTCGGCTTTGAGTGTGTCAAGCAGAGAAGCAACGCTCTAC
TCACTCTTGGACGATCAGCAGAGGCGCTCGCACTAGTTGAAAAGGCAATA
GACGAATCTGGAGATGATGAGCAGCTAGCAGATGATTTTCGTACCATTAT
CAGCATAATCAAGTCTAGTGAACGTCGCAACAGACCACATGAAAACAACT
CAAGTATACTGGTCGACAGCAAAGCACCAGGTGGTTCTCCAAAAGAATCT
GATGAAGGTTCTAGTAGCAGAGCCTCCAAACGATTTCGAATTGACAGAGA
CGACTTTCTTATCAATCTAGCGGAGCATCTTGATTGCATTATATGCTCTA
AGCTTCTATTTGAACCGGTCACTACGGCATGTGGTCACACTTTTTGTAGG
AGTTGTTTGTCCCGGGCTGTTGATGTCTCGGACTCTTGTCCAATGTGTCG
AACAATACTGCATTTGGAAGACCCATCTGTTATGCCGATAACAAATGTGC
TTCGTACAGCAATCATACATTGCTTTCCGGAGGACTACGAAATTAGACGA
AAGGAATCTGAAGCTGATATACGGTCAGAAAACACCTTGAACCGGTTTCC
ATTGTTCCCCTTAAACGCAGTCGTCTTTCCTATGCAGCGTTTTCCCATGC
ATATTTTCGAAGCGCGATACCAACTGATGTTACGACGCATTATGCAAGGC
AGTCGAAAGTTCGGGTTGGTGGCATTGAAACGGGGATCAGAGGGCAGTTC
AGAGCTTTGTGATGTTGGGTGTGTTTTGGAGGTTACCAAAGTGGAGAGAT
TTCCAGATGGACGTTCTCTAATACAAACAGTAGCGAGAGAACGATTCAAA
TTGAAGGGTCGCATCGAAGTGGATGGGTACTTCGTTGGACGAACGGAAGT
CTACGAGGACACCGAAGATACAGACAATGACGATGTTCGAAAAGTAGAAA
GTCGAGTTCGAGAGATTTTGGGTGGACTTTTGGAACGTGGTGGCCGGTTA
CCCCCCATACGACATGCGTTACAACGAGCGGGTCAAGTTCCGACAGAAGT
TCAGGGCGCTGGAGCTTTGGGAATGTGGCTAGCGGGCATGTTGGTTTCTG
ATTTGAGTGAACGTCAACATTTTCTCGAGCTGAACAATTCGAAAACGAGA
TTGCTAGAAATGGAGAAGATTGTGCTGCGCTTTAGGGAATCCTTATTAGG
ACCATCAGGGCTAGAGAGCCGTGAATGCTCAATTCAATAG
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protein sequence of Gchil7603.t1

>Gchil7603.t1 ID=Gchil7603.t1|Name=Gchil7603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=430bp
MPPKAKSKGSTTECVCIGVCVGFECVKQRSNALLTLGRSAEALALVEKAI
DESGDDEQLADDFRTIISIIKSSERRNRPHENNSSILVDSKAPGGSPKES
DEGSSSRASKRFRIDRDDFLINLAEHLDCIICSKLLFEPVTTACGHTFCR
SCLSRAVDVSDSCPMCRTILHLEDPSVMPITNVLRTAIIHCFPEDYEIRR
KESEADIRSENTLNRFPLFPLNAVVFPMQRFPMHIFEARYQLMLRRIMQG
SRKFGLVALKRGSEGSSELCDVGCVLEVTKVERFPDGRSLIQTVARERFK
LKGRIEVDGYFVGRTEVYEDTEDTDNDDVRKVESRVREILGGLLERGGRL
PPIRHALQRAGQVPTEVQGAGALGMWLAGMLVSDLSERQHFLELNNSKTR
LLEMEKIVLRFRESLLGPSGLESRECSIQ*
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mRNA from alignment at tig00000007_pilon:2184826..2186115-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7603.t1 ID=Gchil7603.t1|Name=Gchil7603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000007_pilon:2184826..2186115- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCTAAAGCAAAGTCGAAAGGAAGTACAACCGAATGCGTTTGTAT
TGGAGTGTGTGTCGGCTTTGAGTGTGTCAAGCAGAGAAGCAACGCTCTAC
TCACTCTTGGACGATCAGCAGAGGCGCTCGCACTAGTTGAAAAGGCAATA
GACGAATCTGGAGATGATGAGCAGCTAGCAGATGATTTTCGTACCATTAT
CAGCATAATCAAGTCTAGTGAACGTCGCAACAGACCACATGAAAACAACT
CAAGTATACTGGTCGACAGCAAAGCACCAGGTGGTTCTCCAAAAGAATCT
GATGAAGGTTCTAGTAGCAGAGCCTCCAAACGATTTCGAATTGACAGAGA
CGACTTTCTTATCAATCTAGCGGAGCATCTTGATTGCATTATATGCTCTA
AGCTTCTATTTGAACCGGTCACTACGGCATGTGGTCACACTTTTTGTAGG
AGTTGTTTGTCCCGGGCTGTTGATGTCTCGGACTCTTGTCCAATGTGTCG
AACAATACTGCATTTGGAAGACCCATCTGTTATGCCGATAACAAATGTGC
TTCGTACAGCAATCATACATTGCTTTCCGGAGGACTACGAAATTAGACGA
AAGGAATCTGAAGCTGATATACGGTCAGAAAACACCTTGAACCGGTTTCC
ATTGTTCCCCTTAAACGCAGTCGTCTTTCCTATGCAGCGTTTTCCCATGC
ATATTTTCGAAGCGCGATACCAACTGATGTTACGACGCATTATGCAAGGC
AGTCGAAAGTTCGGGTTGGTGGCATTGAAACGGGGATCAGAGGGCAGTTC
AGAGCTTTGTGATGTTGGGTGTGTTTTGGAGGTTACCAAAGTGGAGAGAT
TTCCAGATGGACGTTCTCTAATACAAACAGTAGCGAGAGAACGATTCAAA
TTGAAGGGTCGCATCGAAGTGGATGGGTACTTCGTTGGACGAACGGAAGT
CTACGAGGACACCGAAGATACAGACAATGACGATGTTCGAAAAGTAGAAA
GTCGAGTTCGAGAGATTTTGGGTGGACTTTTGGAACGTGGTGGCCGGTTA
CCCCCCATACGACATGCGTTACAACGAGCGGGTCAAGTTCCGACAGAAGT
TCAGGGCGCTGGAGCTTTGGGAATGTGGCTAGCGGGCATGTTGGTTTCTG
ATTTGAGTGAACGTCAACATTTTCTCGAGCTGAACAATTCGAAAACGAGA
TTGCTAGAAATGGAGAAGATTGTGCTGCGCTTTAGGGAATCCTTATTAGG
ACCATCAGGGCTAGAGAGCCGTGAATGCTCAATTCAATAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2184826..2186115-

>Gchil7603.t1 ID=Gchil7603.t1|Name=Gchil7603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000007_pilon:2184826..2186115- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCTAAAGCAAAGTCGAAAGGAAGTACAACCGAATGCGTTTGTAT
TGGAGTGTGTGTCGGCTTTGAGTGTGTCAAGCAGAGAAGCAACGCTCTAC
TCACTCTTGGACGATCAGCAGAGGCGCTCGCACTAGTTGAAAAGGCAATA
GACGAATCTGGAGATGATGAGCAGCTAGCAGATGATTTTCGTACCATTAT
CAGCATAATCAAGTCTAGTGAACGTCGCAACAGACCACATGAAAACAACT
CAAGTATACTGGTCGACAGCAAAGCACCAGGTGGTTCTCCAAAAGAATCT
GATGAAGGTTCTAGTAGCAGAGCCTCCAAACGATTTCGAATTGACAGAGA
CGACTTTCTTATCAATCTAGCGGAGCATCTTGATTGCATTATATGCTCTA
AGCTTCTATTTGAACCGGTCACTACGGCATGTGGTCACACTTTTTGTAGG
AGTTGTTTGTCCCGGGCTGTTGATGTCTCGGACTCTTGTCCAATGTGTCG
AACAATACTGCATTTGGAAGACCCATCTGTTATGCCGATAACAAATGTGC
TTCGTACAGCAATCATACATTGCTTTCCGGAGGACTACGAAATTAGACGA
AAGGAATCTGAAGCTGATATACGGTCAGAAAACACCTTGAACCGGTTTCC
ATTGTTCCCCTTAAACGCAGTCGTCTTTCCTATGCAGCGTTTTCCCATGC
ATATTTTCGAAGCGCGATACCAACTGATGTTACGACGCATTATGCAAGGC
AGTCGAAAGTTCGGGTTGGTGGCATTGAAACGGGGATCAGAGGGCAGTTC
AGAGCTTTGTGATGTTGGGTGTGTTTTGGAGGTTACCAAAGTGGAGAGAT
TTCCAGATGGACGTTCTCTAATACAAACAGTAGCGAGAGAACGATTCAAA
TTGAAGGGTCGCATCGAAGTGGATGGGTACTTCGTTGGACGAACGGAAGT
CTACGAGGACACCGAAGATACAGACAATGACGATGTTCGAAAAGTAGAAA
GTCGAGTTCGAGAGATTTTGGGTGGACTTTTGGAACGTGGTGGCCGGTTA
CCCCCCATACGACATGCGTTACAACGAGCGGGTCAAGTTCCGACAGAAGT
TCAGGGCGCTGGAGCTTTGGGAATGTGGCTAGCGGGCATGTTGGTTTCTG
ATTTGAGTGAACGTCAACATTTTCTCGAGCTGAACAATTCGAAAACGAGA
TTGCTAGAAATGGAGAAGATTGTGCTGCGCTTTAGGGAATCCTTATTAGG
ACCATCAGGGCTAGAGAGCCGTGAATGCTCAATTCAATAG
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