Gchil7019.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7019.t1
Unique Name	Gchil7019.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	647

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000131_pilon	contig	tig00000131_pilon:44369..47095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR009CT
PFAMs	HCO3_cotransp
Max annot lvl	2759\|Eukaryota
Evalue	4.46e-169
EggNOG OGs	KOG1172@1\|root,KOG1172@2759\|Eukaryota
Description	inorganic anion exchanger activity
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7019	Gchil7019	Gracilaria chilensis NLEC103_M9 male	gene	tig00000131_pilon 44369..47095 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7019.t1	Gchil7019.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000131_pilon 44369..47095 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7019.t1.start1	Gchil7019.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000131_pilon 44369..44371 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7019.t1.CDS1	Gchil7019.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 44369..46143 +
Gchil7019.t1.CDS2	Gchil7019.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 46930..47095 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7019.t1.exon1	Gchil7019.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 44369..46143 +
Gchil7019.t1.exon2	Gchil7019.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 46930..47095 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7019.t1.intron1	Gchil7019.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00000131_pilon 46144..46929 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7019.t1.stop1	Gchil7019.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000131_pilon 47093..47095 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000131_pilon:44369..47095+
coding sequence from alignment at tig00000131_pilon:44369..47095+

mRNA sequence

>Gchil7019.t1 ID=Gchil7019.t1|Name=Gchil7019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=647bp
MAMASKLAEGEHTSSQLGNGRPTVPAQQSAFVTGAFFSWTKGSGPACVGH
AFVSHPSPSRPVRGLRRRPLPTIYTPLSSTKTRRAHPLKCSANESVSGNG
VAAKPDWPLGPPAHPGRFAPKYWLQGLRDDIKRRLPLYASDWKDGLRFKS
IPVIMFLYFACLAPVVAFGGLTFALTNGSMGVVEFLLSSGVSGMAYALFS
GQPLTFIAPTGLTLAFTVALYGFCQVAAVPFLPMYAWVGLWTSLILFIAV
IVNMSDIIKFCTRFTDDIFNSLIATNFVYEASRALLKPFLLFGPDKTNPF
VALALALGTLLSARCLTGLRTSRYFFKRARNTLADFGPVLSIAAMSAVAS
IPAVAKVGLERLSIPSSFSLAGGRAWVVPIMTTPLSLRLLAIVPALLLTC
LFFLDQNISVRVVNSARHKLKKGPAYHLDMLVLAVCTFACSIVGLPWMCA
GTVQSLAHVQALAEVESRDGRDEIVAVQENRVTAFFVHAAIACSLFLLPV
VSRIPMAVISGLFLFLGSNMMNGNEFLGRIRYMVMDPSMYPADSPMTKVS
ARQVHLFTVLQVGCLGALWALKLNKKTSMFFPAVIATLMVIRGELGDDGA
AGVVAAIDGVESGLGGAIVEKLDVGVACKMVGEILANIELVDGAVL*

spliced messenger RNA

>Gchil7019.t1 ID=Gchil7019.t1|Name=Gchil7019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00000131_pilon:44369..47095+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGGCATCAAAACTTGCTGAGGGCGAGCATACCAGTTCCCAATT
GGGTAATGGACGGCCGACGGTTCCCGCCCAACAAAGTGCCTTTGTGACTG
GTGCATTCTTTTCGTGGACAAAAGGAAGTGGGCCGGCGTGTGTGGGACAT
GCATTTGTGTCTCATCCATCTCCATCGCGGCCGGTGCGTGGGCTTCGCCG
CCGACCACTGCCAACCATATACACGCCTCTCTCAAGCACGAAAACACGGC
GTGCACACCCGCTCAAGTGCTCGGCGAACGAGTCGGTCAGCGGCAATGGC
GTGGCCGCCAAGCCCGACTGGCCGCTAGGCCCTCCTGCGCACCCCGGCAG
ATTTGCCCCCAAGTACTGGCTGCAAGGGCTGCGGGACGATATCAAGCGCC
GTTTGCCGCTGTACGCGTCCGACTGGAAAGATGGTCTGCGTTTCAAATCG
ATTCCTGTCATAATGTTTCTGTACTTTGCATGCCTGGCACCAGTGGTTGC
ATTCGGCGGACTAACTTTTGCGTTGACAAATGGCAGCATGGGCGTTGTTG
AATTCTTGCTGAGCTCGGGTGTGAGTGGAATGGCGTACGCTTTGTTTTCG
GGGCAGCCTCTAACTTTTATTGCGCCAACAGGACTGACGCTGGCGTTTAC
CGTGGCGCTGTACGGATTTTGCCAGGTTGCGGCAGTGCCATTTCTGCCCA
TGTACGCATGGGTGGGGTTATGGACGTCTTTGATACTTTTCATCGCGGTG
ATCGTGAACATGAGCGACATTATCAAGTTTTGTACGCGCTTCACGGACGA
CATCTTCAATTCGCTCATCGCCACCAACTTTGTGTATGAAGCGTCGCGCG
CTCTGCTCAAGCCGTTCCTGCTGTTTGGGCCGGATAAGACTAACCCTTTT
GTGGCGCTGGCGCTGGCATTGGGAACGCTGCTGTCGGCCAGGTGCTTGAC
AGGCCTTCGCACGTCGAGATACTTTTTCAAGAGGGCGAGAAACACACTTG
CGGATTTCGGGCCGGTTCTGTCCATCGCGGCCATGAGCGCCGTGGCGTCG
ATACCGGCTGTGGCGAAGGTGGGGCTGGAGCGACTTTCCATTCCGTCCTC
GTTTTCGCTCGCCGGCGGGCGAGCGTGGGTGGTACCCATCATGACGACgc
cgctgtcgctgcggctgctggctattgtgcccgcgctgctgctgACGTGT
CTGTTCTTCTTGGACCAGAACATTTCCGTGCGCGTGGTGAACTCGGCGCG
ACACAAACTGAAGAAAGGTCCGGCGTACCACCTGGACATGCTGGTGCTGG
CTGTGTGCACGTTCGCGTGTTCCATCGTGGGGCTGCCGTGGATGTGCGCC
GGAACGGTTCAGTCGCTCGCGCACGTGCAGGCGCTTGCGGAGGTGGAATC
GCGCGACGGTAGGGATGAAATCGTTGCAGTGCAGGAGAACCGCGTGACGG
CGTTCTTTGTACATGCTGCGATCGCGTGCTCGCTGTTTCTTTTACCGGTG
GTGAGTCGCATTCCGATGGCGGTGATCAGTGGGCTGTTCCTGTTCCTGGG
GAGCAACATGATGAACGGAAATGAGTTTCTGGGGCGCATTCGGTACATGG
TAATGGACCCCAGCATGTACCCCGCGGATTCGCCCATGACGAAAGTGTCG
GCGCGGCAGGTGCACCTGTTCACGGTGCTTCAAGTGGGGTGTCTGGGCGC
GCTGTGGGCGCTCAAGCTGAACAAGAAGACGAGCATGTTCTTCCcggcgg
tgattgcgactctgatggtgatccgGGGAGAACTCGGCGACGACGGGGCG
GCCGGCGTAGTAGCGGCCATTGACGGCGTTGAGAGCGGCTTGGGCGGCGC
GATCGTCGAAAAACTTGACGTAGGTGTTGCCTGCAAGATGGTCGGCGAGA
TTCTGGCAAACATAGAGCTTGTCGATGGGGCCGTGCTTTGA

protein sequence of Gchil7019.t1

>Gchil7019.t1 ID=Gchil7019.t1|Name=Gchil7019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=647bp
MAMASKLAEGEHTSSQLGNGRPTVPAQQSAFVTGAFFSWTKGSGPACVGH
AFVSHPSPSRPVRGLRRRPLPTIYTPLSSTKTRRAHPLKCSANESVSGNG
VAAKPDWPLGPPAHPGRFAPKYWLQGLRDDIKRRLPLYASDWKDGLRFKS
IPVIMFLYFACLAPVVAFGGLTFALTNGSMGVVEFLLSSGVSGMAYALFS
GQPLTFIAPTGLTLAFTVALYGFCQVAAVPFLPMYAWVGLWTSLILFIAV
IVNMSDIIKFCTRFTDDIFNSLIATNFVYEASRALLKPFLLFGPDKTNPF
VALALALGTLLSARCLTGLRTSRYFFKRARNTLADFGPVLSIAAMSAVAS
IPAVAKVGLERLSIPSSFSLAGGRAWVVPIMTTPLSLRLLAIVPALLLTC
LFFLDQNISVRVVNSARHKLKKGPAYHLDMLVLAVCTFACSIVGLPWMCA
GTVQSLAHVQALAEVESRDGRDEIVAVQENRVTAFFVHAAIACSLFLLPV
VSRIPMAVISGLFLFLGSNMMNGNEFLGRIRYMVMDPSMYPADSPMTKVS
ARQVHLFTVLQVGCLGALWALKLNKKTSMFFPAVIATLMVIRGELGDDGA
AGVVAAIDGVESGLGGAIVEKLDVGVACKMVGEILANIELVDGAVL*

mRNA from alignment at tig00000131_pilon:44369..47095+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7019.t1 ID=Gchil7019.t1|Name=Gchil7019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2727bp|location=Sequence derived from alignment at tig00000131_pilon:44369..47095+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGATGGCATCAAAACTTGCTGAGGGCGAGCATACCAGTTCCCAATT
GGGTAATGGACGGCCGACGGTTCCCGCCCAACAAAGTGCCTTTGTGACTG
GTGCATTCTTTTCGTGGACAAAAGGAAGTGGGCCGGCGTGTGTGGGACAT
GCATTTGTGTCTCATCCATCTCCATCGCGGCCGGTGCGTGGGCTTCGCCG
CCGACCACTGCCAACCATATACACGCCTCTCTCAAGCACGAAAACACGGC
GTGCACACCCGCTCAAGTGCTCGGCGAACGAGTCGGTCAGCGGCAATGGC
GTGGCCGCCAAGCCCGACTGGCCGCTAGGCCCTCCTGCGCACCCCGGCAG
ATTTGCCCCCAAGTACTGGCTGCAAGGGCTGCGGGACGATATCAAGCGCC
GTTTGCCGCTGTACGCGTCCGACTGGAAAGATGGTCTGCGTTTCAAATCG
ATTCCTGTCATAATGTTTCTGTACTTTGCATGCCTGGCACCAGTGGTTGC
ATTCGGCGGACTAACTTTTGCGTTGACAAATGGCAGCATGGGCGTTGTTG
AATTCTTGCTGAGCTCGGGTGTGAGTGGAATGGCGTACGCTTTGTTTTCG
GGGCAGCCTCTAACTTTTATTGCGCCAACAGGACTGACGCTGGCGTTTAC
CGTGGCGCTGTACGGATTTTGCCAGGTTGCGGCAGTGCCATTTCTGCCCA
TGTACGCATGGGTGGGGTTATGGACGTCTTTGATACTTTTCATCGCGGTG
ATCGTGAACATGAGCGACATTATCAAGTTTTGTACGCGCTTCACGGACGA
CATCTTCAATTCGCTCATCGCCACCAACTTTGTGTATGAAGCGTCGCGCG
CTCTGCTCAAGCCGTTCCTGCTGTTTGGGCCGGATAAGACTAACCCTTTT
GTGGCGCTGGCGCTGGCATTGGGAACGCTGCTGTCGGCCAGGTGCTTGAC
AGGCCTTCGCACGTCGAGATACTTTTTCAAGAGGGCGAGAAACACACTTG
CGGATTTCGGGCCGGTTCTGTCCATCGCGGCCATGAGCGCCGTGGCGTCG
ATACCGGCTGTGGCGAAGGTGGGGCTGGAGCGACTTTCCATTCCGTCCTC
GTTTTCGCTCGCCGGCGGGCGAGCGTGGGTGGTACCCATCATGACGACgc
cgctgtcgctgcggctgctggctattgtgcccgcgctgctgctgACGTGT
CTGTTCTTCTTGGACCAGAACATTTCCGTGCGCGTGGTGAACTCGGCGCG
ACACAAACTGAAGAAAGGTCCGGCGTACCACCTGGACATGCTGGTGCTGG
CTGTGTGCACGTTCGCGTGTTCCATCGTGGGGCTGCCGTGGATGTGCGCC
GGAACGGTTCAGTCGCTCGCGCACGTGCAGGCGCTTGCGGAGGTGGAATC
GCGCGACGGTAGGGATGAAATCGTTGCAGTGCAGGAGAACCGCGTGACGG
CGTTCTTTGTACATGCTGCGATCGCGTGCTCGCTGTTTCTTTTACCGGTG
GTGAGTCGCATTCCGATGGCGGTGATCAGTGGGCTGTTCCTGTTCCTGGG
GAGCAACATGATGAACGGAAATGAGTTTCTGGGGCGCATTCGGTACATGG
TAATGGACCCCAGCATGTACCCCGCGGATTCGCCCATGACGAAAGTGTCG
GCGCGGCAGGTGCACCTGTTCACGGTGCTTCAAGTGGGGTGTCTGGGCGC
GCTGTGGGCGCTCAAGCTGAACAAGAAGACGAGCATGTTCTTCCcggcgg
tgattgcgactctgatggtgatccggtcgcagttggcgccgaggctgttc
gcggccaagacgttggaaacgcttgacggggagctgtctgacaaggggga
ggacgacgtgacggaggcgggtgctcgagttgggcagctatcgcatgcgg
gcaactgagcgcgattgtaaagaaaaaaaaagatgagagtttgctaggag
ggccaactagagtgggcgatcgcgagatgaagagcggtacgggcggtggc
ggtgcagctcgtgttcgcggtctcggtcgcggcctctgtctctgtctctg
tccctgtctctgtctctgtccctgtctctgtctcggtcgcggtcgcggtc
tcggtcgcggtctcggtctcggtctcgattgcgttggcgatcgttgtctc
tgtccctgtctctgtcgcggtcgcgttgacgttcgcggtcgcgttggcga
tcacgatcgcgttggcggtcgcggtcgcggtcacggtcgcggtcgcggtc
gcggtcacgatcgcggtagcggtcgcggtcGCGCTGCACATAACGGTCAT
ACGAGTCGGAGCGGCGGTGGTGCCATGGCGGGCGGTGGCGCTCGTCACGG
GGCGCAGGGTGGTAGTATGggcgggggcgcggcggcggtggtgggagcgg
ctgggagttgggagcggtgggagcggctgcagcggtagtggcagcggcgg
gggacgggggcgggggcgggcggAGATGCAAAAAGTGACAAAAGTGACCG
CGCTCACAGTGGCCGTTGGTCTCGAAGGGGCGACATTTGCCGTCGCGAAA
GTCGGTTACAGGGGAGAACTCGGCGACGACGGGGCGGCCGGCGTAGTAGC
GGCCATTGACGGCGTTGAGAGCGGCTTGGGCGGCGCGATCGTCGAAAAAC
TTGACGTAGGTGTTGCCTGCAAGATGGTCGGCGAGATTCTGGCAAACATA
GAGCTTGTCGATGGGGCCGTGCTTTGA

Coding sequence (CDS) from alignment at tig00000131_pilon:44369..47095+

>Gchil7019.t1 ID=Gchil7019.t1|Name=Gchil7019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1941bp|location=Sequence derived from alignment at tig00000131_pilon:44369..47095+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGATGGCATCAAAACTTGCTGAGGGCGAGCATACCAGTTCCCAATT
GGGTAATGGACGGCCGACGGTTCCCGCCCAACAAAGTGCCTTTGTGACTG
GTGCATTCTTTTCGTGGACAAAAGGAAGTGGGCCGGCGTGTGTGGGACAT
GCATTTGTGTCTCATCCATCTCCATCGCGGCCGGTGCGTGGGCTTCGCCG
CCGACCACTGCCAACCATATACACGCCTCTCTCAAGCACGAAAACACGGC
GTGCACACCCGCTCAAGTGCTCGGCGAACGAGTCGGTCAGCGGCAATGGC
GTGGCCGCCAAGCCCGACTGGCCGCTAGGCCCTCCTGCGCACCCCGGCAG
ATTTGCCCCCAAGTACTGGCTGCAAGGGCTGCGGGACGATATCAAGCGCC
GTTTGCCGCTGTACGCGTCCGACTGGAAAGATGGTCTGCGTTTCAAATCG
ATTCCTGTCATAATGTTTCTGTACTTTGCATGCCTGGCACCAGTGGTTGC
ATTCGGCGGACTAACTTTTGCGTTGACAAATGGCAGCATGGGCGTTGTTG
AATTCTTGCTGAGCTCGGGTGTGAGTGGAATGGCGTACGCTTTGTTTTCG
GGGCAGCCTCTAACTTTTATTGCGCCAACAGGACTGACGCTGGCGTTTAC
CGTGGCGCTGTACGGATTTTGCCAGGTTGCGGCAGTGCCATTTCTGCCCA
TGTACGCATGGGTGGGGTTATGGACGTCTTTGATACTTTTCATCGCGGTG
ATCGTGAACATGAGCGACATTATCAAGTTTTGTACGCGCTTCACGGACGA
CATCTTCAATTCGCTCATCGCCACCAACTTTGTGTATGAAGCGTCGCGCG
CTCTGCTCAAGCCGTTCCTGCTGTTTGGGCCGGATAAGACTAACCCTTTT
GTGGCGCTGGCGCTGGCATTGGGAACGCTGCTGTCGGCCAGGTGCTTGAC
AGGCCTTCGCACGTCGAGATACTTTTTCAAGAGGGCGAGAAACACACTTG
CGGATTTCGGGCCGGTTCTGTCCATCGCGGCCATGAGCGCCGTGGCGTCG
ATACCGGCTGTGGCGAAGGTGGGGCTGGAGCGACTTTCCATTCCGTCCTC
GTTTTCGCTCGCCGGCGGGCGAGCGTGGGTGGTACCCATCATGACGACgc
cgctgtcgctgcggctgctggctattgtgcccgcgctgctgctgACGTGT
CTGTTCTTCTTGGACCAGAACATTTCCGTGCGCGTGGTGAACTCGGCGCG
ACACAAACTGAAGAAAGGTCCGGCGTACCACCTGGACATGCTGGTGCTGG
CTGTGTGCACGTTCGCGTGTTCCATCGTGGGGCTGCCGTGGATGTGCGCC
GGAACGGTTCAGTCGCTCGCGCACGTGCAGGCGCTTGCGGAGGTGGAATC
GCGCGACGGTAGGGATGAAATCGTTGCAGTGCAGGAGAACCGCGTGACGG
CGTTCTTTGTACATGCTGCGATCGCGTGCTCGCTGTTTCTTTTACCGGTG
GTGAGTCGCATTCCGATGGCGGTGATCAGTGGGCTGTTCCTGTTCCTGGG
GAGCAACATGATGAACGGAAATGAGTTTCTGGGGCGCATTCGGTACATGG
TAATGGACCCCAGCATGTACCCCGCGGATTCGCCCATGACGAAAGTGTCG
GCGCGGCAGGTGCACCTGTTCACGGTGCTTCAAGTGGGGTGTCTGGGCGC
GCTGTGGGCGCTCAAGCTGAACAAGAAGACGAGCATGTTCTTCCcggcgg
tgattgcgactctgatggtgatccgGGGAGAACTCGGCGACGACGGGGCG
GCCGGCGTAGTAGCGGCCATTGACGGCGTTGAGAGCGGCTTGGGCGGCGC
GATCGTCGAAAAACTTGACGTAGGTGTTGCCTGCAAGATGGTCGGCGAGA
TTCTGGCAAACATAGAGCTTGTCGATGGGGCCGTGCTTTGA