Gchil7084.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7084.t1
Unique NameGchil7084.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Homology
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A2V3IPK1_9FLOR (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPK1_9FLOR)

HSP 1 Score: 371 bits (953), Expect = 1.800e-127
Identity = 194/268 (72.39%), Postives = 221/268 (82.46%), Query Frame = 0
Query:    1 MFAFASTFTTPVSRSSIVPGTGSSSLGSDGSYFVSARRISCWKHPRRVSAIPSMSLRPSEAFTNLILSDVSDVNRGPLFATAFVFFLTFWGGISFVKGSTKPRITQASFTLRESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKVMVEEDEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVYEGDE-EQAETQKETVVSS 267
            MFAFA++F   V  +++ P T    L +  S+F+S   I         S  P+MS+ P  A +NL+L+D+S VNR  LFATAFVFFLTFWGG+SFVKGSTKPRITQASFTL+E ++DIAKKTARYLMQRSFVADPEKD+R GVMTFTGKVRASSSVASILV VAASGLWS TYILNF+LP QYQSPYWG LT LSFLVVPWYWK ASRTE+VKVMVEEDEG+STLYLKGHRDEIE+LEKAF+WKRNPPVYEG+E E+  TQKET+ SS
Sbjct:    1 MFAFAASFAPQVLSNAVRPATAPRRLHATNSHFISPLSIRRQTARNVSSTSPTMSVEPPIALSNLLLADISTVNRNSLFATAFVFFLTFWGGVSFVKGSTKPRITQASFTLQEPSADIAKKTARYLMQRSFVADPEKDTRKGVMTFTGKVRASSSVASILVAVAASGLWSFTYILNFILPQQYQSPYWGWLTALSFLVVPWYWKQASRTEQVKVMVEEDEGLSTLYLKGHRDEIEELEKAFSWKRNPPVYEGEEQEKTNTQKETIPSS 268          
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A7S1ERL7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERL7_9RHOD)

HSP 1 Score: 173 bits (438), Expect = 1.780e-49
Identity = 89/182 (48.90%), Postives = 124/182 (68.13%), Query Frame = 0
Query:   74 NRGPLFATAFVFFLTFWGGISFVKGSTKPRITQASFTLRESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKVMVEE----DEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVYE 251
            N   L  T  VFFLTFWG ISFVKGSTK RI Q +++++   +D+A++TA + + RSF  + E D R GV+TF G V  S+++A++LV   A GL  L  IL+ VLP QYQSP W ++  LS LV PWYW  A R E+VK+M+EE    ++G++T+++KGHRDE+ + E+A  +KRN P  E
Sbjct:   88 NTQSLGITGLVFFLTFWGLISFVKGSTKARIEQRNYSVQGDPADLARRTAAHFLGRSFAINREADKRPGVVTFEGMVAPSTALAALLVFCLAIGLSGLVIILDLVLPEQYQSPLWWNIVWLSGLVAPWYWNGAKRVEQVKLMIEENSETEKGMNTIFIKGHRDELLEFEQALGYKRNEPAEE 269          
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A7S1XHM9_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHM9_9RHOD)

HSP 1 Score: 165 bits (417), Expect = 3.430e-46
Identity = 90/176 (51.14%), Postives = 116/176 (65.91%), Query Frame = 0
Query:   74 NRGPLFATAFVFFLTFWGGISFVKGSTKPRITQASFTLRESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKVMVEED---EGVSTLYLKGHRDEIEQLEKAFNWKRN 246
            N   L  T  VFFLTFWG ISFVKG+TK RI Q ++T+ E  S IA  +A++ M RS+  + E D+R GV+TF G V  S+ +A +LV   A+GL  L  ILN +LP  Y SP W +L  LS LV PWYWK ASR E+VK+M+EE       +T+Y+KGHRDE+ + EKA  +KRN
Sbjct:  102 NTKSLGITGVVFFLTFWGLISFVKGATKARIEQRNYTVAEDPSAIAAASAKHFMGRSYRINREADTRPGVVTFEGDVAPSTFLALLLVFSLAAGLSGLVVILNTLLPESYHSPLWWNLDWLSLLVAPWYWKGASRIEQVKMMIEESFDSPSANTVYIKGHRDELMEYEKALGYKRN 277          
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A1X6NQV9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQV9_PORUM)

HSP 1 Score: 157 bits (397), Expect = 2.270e-43
Identity = 88/196 (44.90%), Postives = 120/196 (61.22%), Query Frame = 0
Query:   67 LSDVSDVNRGPLFATAFVFFLTFWGGISFVKGSTKPRITQASFTLRESASD--IAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKVMVEEDEGVS--------------TLYLKGHRDEIEQLEKAFNWKRN 246
            L++V+  N+  L  TAFVF LT WGG+SF+KGS K R+TQASFTL    S   +A+K +  L  R++VA PE D R GVMT+ G V+ S+S+A+ILV VA +GL  +  + N VLP +Y S  W ++++L   V PWYW  A R E+ K MV+  EG +              TL++KGHRDE+   E+    KRN
Sbjct:   68 LAEVTATNQSSLGVTAFVFLLTAWGGLSFIKGSVKDRLTQASFTLPTDTSPDTLARKASAILTGRAYVAKPEMDERPGVMTYEGVVKPSTSIATILVSVAVAGLAGVVLMANLVLPPEYASSKWYAVSVLGAAVGPWYWAKAERAEQFKCMVQVGEGGNEPLAGVPGVPSTGVTLFVKGHRDEVAVFERELGVKRN 263          
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A8J7AEH6_9CYAN (Cofactor assembly of complex C subunit B n=2 Tax=Romeria TaxID=945765 RepID=A0A8J7AEH6_9CYAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.760e-14
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 0
Query:   91 GGISFVKGSTKPRITQASFTLRESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKVMVEEDEGVST----LYLKGHRDEIEQLE 238
            G I F++ STK RI  A FT +++ SD+ +  A +L  R++    +  S    +T  G VR S  +A  L G+AA G   L  +L+  L ++++  +WG L L S L   +YW+ ++R EE+   V   + +S+    L +KGHRDEI QL+
Sbjct:   19 GLIFFIRASTKDRIQTAQFTSQQTPSDLYQTVAHHLQSRAYRLKADATSERETVTLVGFVRPSLFLAVFLTGLAAIGWLCLALVLS-TLFSEWRGLFWGLLGL-SPLAGLFYWRRSARPEEISFRVSPADDLSSAQSSLKVKGHRDEIAQLQ 168          
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A2G5CJH8_AQUCA (Uncharacterized protein n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CJH8_AQUCA)

HSP 1 Score: 72.8 bits (177), Expect = 2.200e-11
Identity = 62/216 (28.70%), Postives = 104/216 (48.15%), Query Frame = 0
Query:   38 RISCWKHPRRVSAIPSMSLRPSEAFTNLI-LSDVSDVNRGPLFATAFVFFLTFWGGISFVKGSTKPRITQASFTLRES-ASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKV-MVEEDEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVY 250
            R S  + P  +S+  S++L   E + +L  +++    +    + +  +F ++  G  S +K S K +I + +F L E  A   AK+ A  ++      +     R   +TF G +  S   A++L       L S+  +L   +P+     YW  LT+LS L   +YWK ASR E++KV MV EDEGV  + ++G   ++EQ+ K         VY
Sbjct:   58 RFSLLQEPLLLSSTSSINLH--EDYNSLYYVAESVGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFVLEEGEAKKEAKQVAGEILSFFTRTNFAVSDRGETITFEGMMVPSRGQAALLTFCTCISLVSVALVLTITVPDVGDKWYW--LTILSPLAGVYYWKRASRKEQIKVKMVVEDEGVQEIIVQGDDQQVEQMRKELKLNEKGMVY 269          
BLAST of Gchil7084.t1 vs. uniprot
Match: UPI0008F9A03B (cofactor assembly of complex C subunit B n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI0008F9A03B)

HSP 1 Score: 70.1 bits (170), Expect = 5.040e-11
Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 0
Query:   85 FFLTFWGGIS---FVKGSTKPRITQASFTLRESASDIAKKTARYLMQRSFVA---DPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKVMVE-----EDEGVSTLYLKGHRDEIEQLEKAF 241
            FFLT   G+    F+K S K R  Q   T ++S   + +    Y  QR++ A   DP+++     +TF G+VR S  +A  L  +AA GL  L  +L  +      S +  +L LLS L   +YW+ ASRTE+VK+ V+     E +  ST+   GHRDE+  L++  
Sbjct:   10 FFLTLLLGVGLFFFIKASIKDRTQQMQLTCKQSQEALWEDLKSYFQQRAYYAIATDPKQNQ----ITFEGQVRPSWFLAIFLSTLAAVGLLCLALVLALLFSAPGAS-FIYALVLLSPLAGVFYWRGASRTEQVKIQVQPHTAGETDLQSTVTAIGHRDELATLKQTL 172          
BLAST of Gchil7084.t1 vs. uniprot
Match: W1PGA4_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PGA4_AMBTC)

HSP 1 Score: 71.2 bits (173), Expect = 6.150e-11
Identity = 56/222 (25.23%), Postives = 102/222 (45.95%), Query Frame = 0
Query:   37 RRISCWKHPRRVSAIPSMSLRPSEAFTNLILSDVSDVNRGPLFATAFVFFLTFWGGISFVKGSTKPRITQASFTLRE------SASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKV--MVEEDEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVY 250
            RR++  K  ++   + + S  P     + +L +    ++   + +  +F ++  G  S +K S K +I Q +F   E      + S IA +   +  + +F+       R   +TF G +  S   A++L       L S+  +L   +P      +W  LT LS L   +YWK ASR E++KV  ++ ED  +S + ++G  +++EQ+ K  N      VY
Sbjct:   35 RRLNLQKREKKRQRLITASFSPDPLMPSFLLHENVGYSQASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGSEKEEGKKAPSQIAGEILSFFTRNNFIVS----DRGEAITFEGMMVPSRGQAALLTFCTCISLASVALVLTITIPEGGNRWFW--LTALSPLAGAYYWKRASRKEQIKVKMILAEDGSLSEIIVQGDDEQVEQMRKELNLMEKGMVY 250          
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A804KVE5_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa TaxID=4640 RepID=A0A804KVE5_MUSAM)

HSP 1 Score: 69.7 bits (169), Expect = 2.150e-10
Identity = 61/221 (27.60%), Postives = 104/221 (47.06%), Query Frame = 0
Query:   43 KHPRR-----VSAIPSMSLRPSEAFTNLILSDVSDV--NRGPLFATAFVFFLTFWGGISFVKGSTKPRITQASFTLRESAS----DIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKV-MVEEDEG-VSTLYLKGHRDEIEQLEKAFNWKRNPPVY 250
            + PRR     ++A+  +SL P   F   + S   DV  ++   + +  +F ++  G  S +K S K +I Q +F   E A+     +A +   +  + +F        R   +TF G +  S   A++L       L S+  +L+  +P    + +W  LT+LS L   +YWK ASR EE+KV M+  D G +S + ++G   ++EQ+ K         VY
Sbjct:   35 RRPRRQGRGALAAVARLSLLPDPLFLLDVSSAAGDVGYSQASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVREEGAAVTPNQVAGEILSFFTRNNFAVS----DRGETITFEGMMVPSRGQAALLTFCTCISLASVGLVLSIAVPEGGNNWFW--LTILSPLAGLYYWKRASRKEEIKVKMIVGDNGSISEIVVRGDDQQVEQMRKDLRLSEKGMVY 249          
BLAST of Gchil7084.t1 vs. uniprot
Match: A0A843VCY4_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VCY4_COLES)

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-9
Identity = 50/164 (30.49%), Postives = 81/164 (49.39%), Query Frame = 0
Query:   94 SFVKGSTKPRITQASFTL-----RESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKVRASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVPWYWKAASRTEEVKV--MVEEDEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVY 250
            S +K S K +I Q +F L     R++ + +A +   +  + +F A      R   +TF G +  S   A++L       L S+  +L+  LP    + +W  LT+LS L   +YWK ASR EE+K+  MV ED  +S + ++G   ++EQ+ K         VY
Sbjct:   98 SLIKRSVKSKIVQKTFELGGEEKRKAPNQVAGEILSFFTRNNFSAS----DRGETITFEGMMVPSRGQAALLTFCTCISLASVALVLSIALPEGGNNWFW--LTVLSPLAGAYYWKRASRKEEIKLKMMVGEDGSLSEIIVRGDDQQVEQMRKELQLSEKGMVY 255          
The following BLAST results are available for this feature:
BLAST of Gchil7084.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPK1_9FLOR1.800e-12772.39Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
A0A7S1ERL7_9RHOD1.780e-4948.90Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1XHM9_9RHOD3.430e-4651.14Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A1X6NQV9_PORUM2.270e-4344.90Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A8J7AEH6_9CYAN1.760e-1435.53Cofactor assembly of complex C subunit B n=2 Tax=R... [more]
A0A2G5CJH8_AQUCA2.200e-1128.70Uncharacterized protein n=3 Tax=Thalictroideae Tax... [more]
UPI0008F9A03B5.040e-1134.52cofactor assembly of complex C subunit B n=1 Tax=G... [more]
W1PGA4_AMBTC6.150e-1125.23Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
A0A804KVE5_MUSAM2.150e-1027.60(wild Malaysian banana) hypothetical protein n=2 T... [more]
A0A843VCY4_COLES1.500e-930.49Uncharacterized protein n=1 Tax=Colocasia esculent... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021919Cofactor assembly of complex C subunit B, CCB1PFAMPF12046CCB1coord: 79..243
e-value: 1.4E-32
score: 112.3
IPR021919Cofactor assembly of complex C subunit B, CCB1PANTHERPTHR35302FAMILY NOT NAMEDcoord: 61..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..267
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 156..179
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 185..203
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 180..184
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..77
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..96
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 204..267
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 97..155
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 186..203
NoneNo IPR availableTMHMMTMhelixcoord: 77..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:546484..547287 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7084.t1Gchil7084.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000131_pilon 546484..547287 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7084.t1 ID=Gchil7084.t1|Name=Gchil7084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MFAFASTFTTPVSRSSIVPGTGSSSLGSDGSYFVSARRISCWKHPRRVSA
IPSMSLRPSEAFTNLILSDVSDVNRGPLFATAFVFFLTFWGGISFVKGST
KPRITQASFTLRESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKV
RASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVP
WYWKAASRTEEVKVMVEEDEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVY
EGDEEQAETQKETVVSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021919CCB1