Gchil7084.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7084.t1
Unique NameGchil7084.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:546484..547287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173020.Cha6605_5174
PFAMsCCB1
Max annot lvl1117|Cyanobacteria
Evalue4.1e-13
EggNOG OGs2AZTV@1|root,31S34@2|Bacteria,1G63F@1117|Cyanobacteria
DescriptionAlternative locus ID
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7084Gchil7084Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 546484..547287 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7084.t1.start1Gchil7084.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 546484..546486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7084.t1.CDS1Gchil7084.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 546484..547287 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7084.t1.exon1Gchil7084.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 546484..547287 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7084.t1.stop1Gchil7084.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 547285..547287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7084.t1Gchil7084.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 546484..547287 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7084.t1 ID=Gchil7084.t1|Name=Gchil7084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MFAFASTFTTPVSRSSIVPGTGSSSLGSDGSYFVSARRISCWKHPRRVSA
IPSMSLRPSEAFTNLILSDVSDVNRGPLFATAFVFFLTFWGGISFVKGST
KPRITQASFTLRESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKV
RASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVP
WYWKAASRTEEVKVMVEEDEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVY
EGDEEQAETQKETVVSS*
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spliced messenger RNA

>Gchil7084.t1 ID=Gchil7084.t1|Name=Gchil7084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000131_pilon:546484..547287+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCATTTGCTTCAACTTTCACGACTCCAGTGAGTCGGAGTTCTAT
CGTCCCTGGAACTGGTTCATCTAGTCTAGGAAGCGATGGGTCATATTTTG
TTTCGGCCAGGCGCATCTCTTGTTGGAAGCATCCAAGACGGGTATCCGCC
ATCCCTTCCATGAGCTTAAGGCCCAGTGAAGCGTTCACCAACCTTATCCT
CTCCGACGTATCCGATGTCAACCGCGGCCCTCTCTTTGCCACAGCCTTCG
TATTCTTCTTGACGTTTTGGGGCGGTATCTCATTCGTAAAGGGTTCGACG
AAGCCTCGTATCACACAGGCATCATTCACGTTGCGCGAATCGGCATCTGA
TATCGCAAAGAAAACTGCACGATACCTCATGCAGAGGTCTTTCGTTGCCG
ACCCAGAGAAAGACTCCCGAGCCGGTGTAATGACCTTCACGGGCAAAGTC
CGTGCAAGCTCTAGTGTTGCGAGCATTTTGGTTGGAGTAGCCGCCAGTGG
CCTCTGGTCTCTGACATATATTTTGAACTTCGTACTGCCTAATCAGTACC
AGAGCCCGTACTGGGGATCTTTGACCCTTTTGTCTTTTCTTGTTGTTCCC
TGGTATTGGAAAGCAGCGTCAAGAACCGAGGAAGTGAAGGTCATGGTCGA
GGAAGACGAAGGAGTGTCTACTCTATATCTGAAGGGCCACCGTGATGAGA
TTGAGCAGTTGGAGAAAGCATTTAACTGGAAGAGAAACCCACCGGTGTAT
GAAGGCGATGAAGAACAAGCCGAAACTCAAAAAGAGACTGTTGTTTCAAG
CTGA
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protein sequence of Gchil7084.t1

>Gchil7084.t1 ID=Gchil7084.t1|Name=Gchil7084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MFAFASTFTTPVSRSSIVPGTGSSSLGSDGSYFVSARRISCWKHPRRVSA
IPSMSLRPSEAFTNLILSDVSDVNRGPLFATAFVFFLTFWGGISFVKGST
KPRITQASFTLRESASDIAKKTARYLMQRSFVADPEKDSRAGVMTFTGKV
RASSSVASILVGVAASGLWSLTYILNFVLPNQYQSPYWGSLTLLSFLVVP
WYWKAASRTEEVKVMVEEDEGVSTLYLKGHRDEIEQLEKAFNWKRNPPVY
EGDEEQAETQKETVVSS*
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mRNA from alignment at tig00000131_pilon:546484..547287+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7084.t1 ID=Gchil7084.t1|Name=Gchil7084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000131_pilon:546484..547287+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCATTTGCTTCAACTTTCACGACTCCAGTGAGTCGGAGTTCTAT
CGTCCCTGGAACTGGTTCATCTAGTCTAGGAAGCGATGGGTCATATTTTG
TTTCGGCCAGGCGCATCTCTTGTTGGAAGCATCCAAGACGGGTATCCGCC
ATCCCTTCCATGAGCTTAAGGCCCAGTGAAGCGTTCACCAACCTTATCCT
CTCCGACGTATCCGATGTCAACCGCGGCCCTCTCTTTGCCACAGCCTTCG
TATTCTTCTTGACGTTTTGGGGCGGTATCTCATTCGTAAAGGGTTCGACG
AAGCCTCGTATCACACAGGCATCATTCACGTTGCGCGAATCGGCATCTGA
TATCGCAAAGAAAACTGCACGATACCTCATGCAGAGGTCTTTCGTTGCCG
ACCCAGAGAAAGACTCCCGAGCCGGTGTAATGACCTTCACGGGCAAAGTC
CGTGCAAGCTCTAGTGTTGCGAGCATTTTGGTTGGAGTAGCCGCCAGTGG
CCTCTGGTCTCTGACATATATTTTGAACTTCGTACTGCCTAATCAGTACC
AGAGCCCGTACTGGGGATCTTTGACCCTTTTGTCTTTTCTTGTTGTTCCC
TGGTATTGGAAAGCAGCGTCAAGAACCGAGGAAGTGAAGGTCATGGTCGA
GGAAGACGAAGGAGTGTCTACTCTATATCTGAAGGGCCACCGTGATGAGA
TTGAGCAGTTGGAGAAAGCATTTAACTGGAAGAGAAACCCACCGGTGTAT
GAAGGCGATGAAGAACAAGCCGAAACTCAAAAAGAGACTGTTGTTTCAAG
CTGA
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Coding sequence (CDS) from alignment at tig00000131_pilon:546484..547287+

>Gchil7084.t1 ID=Gchil7084.t1|Name=Gchil7084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000131_pilon:546484..547287+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCATTTGCTTCAACTTTCACGACTCCAGTGAGTCGGAGTTCTAT
CGTCCCTGGAACTGGTTCATCTAGTCTAGGAAGCGATGGGTCATATTTTG
TTTCGGCCAGGCGCATCTCTTGTTGGAAGCATCCAAGACGGGTATCCGCC
ATCCCTTCCATGAGCTTAAGGCCCAGTGAAGCGTTCACCAACCTTATCCT
CTCCGACGTATCCGATGTCAACCGCGGCCCTCTCTTTGCCACAGCCTTCG
TATTCTTCTTGACGTTTTGGGGCGGTATCTCATTCGTAAAGGGTTCGACG
AAGCCTCGTATCACACAGGCATCATTCACGTTGCGCGAATCGGCATCTGA
TATCGCAAAGAAAACTGCACGATACCTCATGCAGAGGTCTTTCGTTGCCG
ACCCAGAGAAAGACTCCCGAGCCGGTGTAATGACCTTCACGGGCAAAGTC
CGTGCAAGCTCTAGTGTTGCGAGCATTTTGGTTGGAGTAGCCGCCAGTGG
CCTCTGGTCTCTGACATATATTTTGAACTTCGTACTGCCTAATCAGTACC
AGAGCCCGTACTGGGGATCTTTGACCCTTTTGTCTTTTCTTGTTGTTCCC
TGGTATTGGAAAGCAGCGTCAAGAACCGAGGAAGTGAAGGTCATGGTCGA
GGAAGACGAAGGAGTGTCTACTCTATATCTGAAGGGCCACCGTGATGAGA
TTGAGCAGTTGGAGAAAGCATTTAACTGGAAGAGAAACCCACCGGTGTAT
GAAGGCGATGAAGAACAAGCCGAAACTCAAAAAGAGACTGTTGTTTCAAG
CTGA
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