Gchil7077.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7077.t1
Unique NameGchil7077.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:468921..469780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH176CT
PFAMsLongin,SHNi-TPR,Synaptobrevin
Max annot lvl2759|Eukaryota
KEGG koko:K08511,ko:K08515
KEGG Pathwayko04130,map04130
GOsGO:0000149,GO:0000323,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006887,GO:0006906,GO:0006996,GO:0007034,GO:0007041,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030139,GO:0030659,GO:0030666,GO:0031090,GO:0031201,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045335,GO:0046903,GO:0046907,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0071840,GO:0090174,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852
Evalue7.38e-33
EggNOG OGsCOG5143@1|root,KOG0859@2759|Eukaryota
DescriptionSNAP receptor activity
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7077Gchil7077Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 468921..469780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7077.t1Gchil7077.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 468921..469780 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7077.t1.start1Gchil7077.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 468921..468923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7077.t1.CDS1Gchil7077.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 468921..469143 +
Gchil7077.t1.CDS2Gchil7077.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 469225..469481 +
Gchil7077.t1.CDS3Gchil7077.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 469565..469780 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7077.t1.exon1Gchil7077.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 468921..469143 +
Gchil7077.t1.exon2Gchil7077.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 469225..469481 +
Gchil7077.t1.exon3Gchil7077.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 469565..469780 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7077.t1.intron1Gchil7077.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000131_pilon 469144..469224 +
Gchil7077.t1.intron2Gchil7077.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000131_pilon 469482..469564 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7077.t1.stop1Gchil7077.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 469778..469780 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7077.t1 ID=Gchil7077.t1|Name=Gchil7077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=232bp
MNPIQYIAAARVADRCRFAQHVVQSSKQSSPVLYEQKFDKILDSTQLIHN
NRLTITDEHVGHIHYEADPALIYLIITAPSYPQRTAFQVLSEARAQFDKH
FGDEMSKATTGSLSKRCKPMFEELVQKYEQPSNIDKVSNVQHQVHQVKDM
MQDNIKAALNNTENLETLLDISDNMKNDAFSFNRSTTEAKKRMQWKNLQM
KLLIAFFVLLIVAVVIGSVVVRRKGSTTPEA*
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spliced messenger RNA

>Gchil7077.t1 ID=Gchil7077.t1|Name=Gchil7077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000131_pilon:468921..469780+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCCATTCAATACATCGCCGCCGCCAGAGTGGCCGACCGTTGTCG
TTTCGCACAACATGTCGTCCAATCTTCCAAACAGTCCTCGCCCGTCTTGT
ACGAACAAAAGTTTGACAAGATTCTCGACAGCACGCAGTTGATACACAAC
AATAGACTGACCATAACAGATGAACATGTCGGTCACATTCACTACGAAGC
TGATCCAGCCCTAATCTACTTGATCATCACAGCGCCGTCGTATCCGCAGC
GCACTGCATTTCAAGTGCTTTCCGAAGCTCGAGCCCAGTTCGATAAACAT
TTTGGCGACGAAATGAGCAAAGCCACCACAGGCTCTCTCTCAAAGCGCTG
CAAACCAATGTTCGAGGAGCTCGTTCAAAAGTACGAGCAACCTTCAAACA
TTGACAAAGTATCTAACGTCCAGCATCAAGTGCACCAGGTCAAGGATATG
ATGCAAGACAATATAAAAGCCGCACTAAACAACACAGAGAATCTTGAAAC
ACTGCTTGACATCAGCGATAACATGAAGAATGATGCCTTCAGTTTTAATC
GCTCAACAACGGAGGCCAAGAAACGAATGCAATGGAAAAACCTGCAAATG
AAACTTCTCATCGCGTTTTTCGTTCTGCTCATTGTCGCAGTCGTCATCGG
CTCTGTGGTAGTTCGTCGAAAAGGCTCGACTACTCCGGAAGCGTAG
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protein sequence of Gchil7077.t1

>Gchil7077.t1 ID=Gchil7077.t1|Name=Gchil7077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=232bp
MNPIQYIAAARVADRCRFAQHVVQSSKQSSPVLYEQKFDKILDSTQLIHN
NRLTITDEHVGHIHYEADPALIYLIITAPSYPQRTAFQVLSEARAQFDKH
FGDEMSKATTGSLSKRCKPMFEELVQKYEQPSNIDKVSNVQHQVHQVKDM
MQDNIKAALNNTENLETLLDISDNMKNDAFSFNRSTTEAKKRMQWKNLQM
KLLIAFFVLLIVAVVIGSVVVRRKGSTTPEA*
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mRNA from alignment at tig00000131_pilon:468921..469780+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7077.t1 ID=Gchil7077.t1|Name=Gchil7077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=860bp|location=Sequence derived from alignment at tig00000131_pilon:468921..469780+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACCCCATTCAATACATCGCCGCCGCCAGAGTGGCCGACCGTTGTCG
TTTCGCACAACATGTCGTCCAATCTTCCAAACAGTCCTCGCCCGTCTTGT
ACGAACAAAAGTTTGACAAGATTCTCGACAGCACGCAGTTGATACACAAC
AATAGACTGACCATAACAGATGAACATGTCGGTCACATTCACTACGAAGC
TGATCCAGCCCTAATCTACTTGAGTAAGTATTCCTTCCTTTCTCGCAACG
TGCAGTGATCGCTTTGAATCATCACGCGTGCTAACCTTCTATTAATAAAA
CCAGTCATCACAGCGCCGTCGTATCCGCAGCGCACTGCATTTCAAGTGCT
TTCCGAAGCTCGAGCCCAGTTCGATAAACATTTTGGCGACGAAATGAGCA
AAGCCACCACAGGCTCTCTCTCAAAGCGCTGCAAACCAATGTTCGAGGAG
CTCGTTCAAAAGTACGAGCAACCTTCAAACATTGACAAAGTATCTAACGT
CCAGCATCAAGTGCACCAGGTCAAGGATATGATGCAAGACAATATAAAAG
CCGCACTAAACGTAAGTACACCCAACCCCCTCGTTTCCATATCTCCGCAC
CACACAAGAATGCAGAACTGACAATTGAATAACCTGTTATATAGAACACA
GAGAATCTTGAAACACTGCTTGACATCAGCGATAACATGAAGAATGATGC
CTTCAGTTTTAATCGCTCAACAACGGAGGCCAAGAAACGAATGCAATGGA
AAAACCTGCAAATGAAACTTCTCATCGCGTTTTTCGTTCTGCTCATTGTC
GCAGTCGTCATCGGCTCTGTGGTAGTTCGTCGAAAAGGCTCGACTACTCC
GGAAGCGTAG
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Coding sequence (CDS) from alignment at tig00000131_pilon:468921..469780+

>Gchil7077.t1 ID=Gchil7077.t1|Name=Gchil7077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000131_pilon:468921..469780+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACCCCATTCAATACATCGCCGCCGCCAGAGTGGCCGACCGTTGTCG
TTTCGCACAACATGTCGTCCAATCTTCCAAACAGTCCTCGCCCGTCTTGT
ACGAACAAAAGTTTGACAAGATTCTCGACAGCACGCAGTTGATACACAAC
AATAGACTGACCATAACAGATGAACATGTCGGTCACATTCACTACGAAGC
TGATCCAGCCCTAATCTACTTGATCATCACAGCGCCGTCGTATCCGCAGC
GCACTGCATTTCAAGTGCTTTCCGAAGCTCGAGCCCAGTTCGATAAACAT
TTTGGCGACGAAATGAGCAAAGCCACCACAGGCTCTCTCTCAAAGCGCTG
CAAACCAATGTTCGAGGAGCTCGTTCAAAAGTACGAGCAACCTTCAAACA
TTGACAAAGTATCTAACGTCCAGCATCAAGTGCACCAGGTCAAGGATATG
ATGCAAGACAATATAAAAGCCGCACTAAACAACACAGAGAATCTTGAAAC
ACTGCTTGACATCAGCGATAACATGAAGAATGATGCCTTCAGTTTTAATC
GCTCAACAACGGAGGCCAAGAAACGAATGCAATGGAAAAACCTGCAAATG
AAACTTCTCATCGCGTTTTTCGTTCTGCTCATTGTCGCAGTCGTCATCGG
CTCTGTGGTAGTTCGTCGAAAAGGCTCGACTACTCCGGAAGCGTAG
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